View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_14 (Length: 495)
Name: NF11977_low_14
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 42238046 - 42238513
Alignment:
| Q |
18 |
aggaaagttaagaaccttggttcaagcataatgaggagtgcatcagtgttggcaagggctctaagaagatgtgaagagaagaaggagaaacggcaccgtg |
117 |
Q |
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| T |
42238046 |
aggaaagttaagaaccttggttcaagcataatgaggagtgcatcagtgttggcaagggctctaagaagatgtgaagagaagaaggagaaacggcaccgtg |
42238145 |
T |
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| Q |
118 |
aattgattgagcttgaacaaagacggattcaaatggaggaatctcggaacgaagttcaccggcaaggtatcgccacccttgtcgccgctgttagcaacct |
217 |
Q |
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| T |
42238146 |
aattgatcgagcttgaacaaagacggattcaaatggaggaatctcggaacgaagttcaccggcaaggtatcgccacccttgtcgccgctgttagcaacct |
42238245 |
T |
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| Q |
218 |
ttccggtgccattcactcattcattaattctgaacaccatggccaaagataaatattaagtaatatatgctagcttatcgatcttataatttattattgt |
317 |
Q |
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| T |
42238246 |
ttccggtgccattcactcattcattaattctgaacaccatggccaaagataaatattaagtaatatatgctagcttatcgatcttatagtttattactgt |
42238345 |
T |
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| Q |
318 |
gtgatttagaaaatcgtataatatttattggtcatgcattctttcacccacttataattcaattgtagtctagtatttttaagtcactttcaccaattga |
417 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42238346 |
gtgatttagaaaatcgtataatatttattggtgatgcattctttcacccacttataattcatttgtagtctagtatttttaagtcactttcaccaattga |
42238445 |
T |
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| Q |
418 |
tttcacttgatgcatggtatatatatgttccattctttgatggtgaaaccaatcctagtgtccctatg |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42238446 |
tttcacttgatgcatggtatatatatgttccattctttgatggtgaaaccaatcctagtgtccctatg |
42238513 |
T |
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