View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_18 (Length: 472)
Name: NF11977_low_18
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 5 - 456
Target Start/End: Original strand, 3593742 - 3594193
Alignment:
| Q |
5 |
gaaattggaaatttcttggtccaataattcattctatcaaataccgaaccatgcatcctttgcttaactttccatctttattcattttttcaatgaaatg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
3593742 |
gaaattggaaatttcttggtccaataattcattctatcaaataccgaaccatgcatcctttgcttaactttccatctttatttctttttttaatgaaatg |
3593841 |
T |
|
| Q |
105 |
aagacatatagcaccggtggtgttcaatgtaacaaacacaactgagagcattttgattagaattgggacaatcagattgtatcaaaatgaagaataaaag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3593842 |
aagacatatagcaccggtggtgttcaatgtaacaaacacaactgagagcattttgattagaattgggacaatcagattgtatcaaaatgaagaataaaag |
3593941 |
T |
|
| Q |
205 |
cagtaccaataaaatccatcaccaccatatgtagcttttgatgacgcggtaaagggcacctaattccttttgcagctatcctgcactcggatatagaaaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3593942 |
cagtaccaataaaatccatcaccaccatatgtagcttttgatgacgcggtttagggcacctaattccttttgcagctatcctgcactcggatatagaaaa |
3594041 |
T |
|
| Q |
305 |
gcttaggcaaaatgagtaattgaacccttgtatattcgaaaaatatgaaagaatgaaaaaatagcatatgcaaacctataaagattcttgagttcctttt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3594042 |
gcttaggcaaaatgagtaattgaacccttgtatattggaaaaatatgaaagaatgaaaaaatagcatatgcaaacctataaagattcttgagttcctttt |
3594141 |
T |
|
| Q |
405 |
ctgcccatgtttttcccatttctctgggattacgactacagtaggcacgttc |
456 |
Q |
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| T |
3594142 |
ctgcccatgtttttcccatttctctgggattacgactacagtaggcacgttc |
3594193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 35715413 - 35715300
Alignment:
| Q |
122 |
tggtgttcaatgtaacaaacacaactgagagcattttgattagaattgggacaatcagattgtatcaaaatgaagaataaaagcagtaccaataaaatcc |
221 |
Q |
| |
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|||| |||||| ||||||||| || |||||| | || ||||| |||||| | |||||||||||||||||||| || |||||||||||||||||||| ||| |
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| T |
35715413 |
tggtattcaatataacaaacagaattgagagaaatt-gattataattgg-agaatcagattgtatcaaaatgcaggataaaagcagtaccaataaattcc |
35715316 |
T |
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| Q |
222 |
atcaccaccatatgta |
237 |
Q |
| |
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|| |||| ||||||| |
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| T |
35715315 |
ataaccaggatatgta |
35715300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 436
Target Start/End: Complemental strand, 35714940 - 35714861
Alignment:
| Q |
357 |
atgaaaaaatagcatatgcaaacctataaagattcttgagttccttttctgcccatgtttttcccatttctctgggatta |
436 |
Q |
| |
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|||||| || |||| |||||||||| | ||||||| ||| ||||||||||||||||||||| |||||| || ||||||| |
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| T |
35714940 |
atgaaataagagcaaatgcaaacctcttaagattcctgaattccttttctgcccatgttttaaccatttttcggggatta |
35714861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 3589103 - 3589145
Alignment:
| Q |
129 |
caatgtaacaaacacaactgagagcattttgattagaattggg |
171 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||| |
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|
| T |
3589103 |
caatataagaaacacaactgagagcattttgattagaattggg |
3589145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 28933435 - 28933488
Alignment:
| Q |
170 |
ggacaatcagattgtatcaaaatgaagaataaaagcagtaccaataaaatccat |
223 |
Q |
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||||||||||||||||||||||| || ||||||||| |||||||||| ||||| |
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| T |
28933435 |
ggacaatcagattgtatcaaaatccaggataaaagcaataccaataaattccat |
28933488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 436
Target Start/End: Original strand, 28933872 - 28933953
Alignment:
| Q |
355 |
gaatgaaaaaatagcatatgcaaacctataaagattcttgagttccttttctgcccatgtttttcccatttctctgggatta |
436 |
Q |
| |
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||||||||||| |||| |||||||||| ||||||| | |||||||||||||||||||||| |||||| || ||||||| |
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| T |
28933872 |
gaatgaaaaaagagcaaatgcaaacctcgaaagattactcctttccttttctgcccatgtttttaccatttttcggggatta |
28933953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 3589078 - 3589107
Alignment:
| Q |
1 |
gcgcgaaattggaaatttcttggtccaata |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3589078 |
gcgcgaaattggaaatttcttggtccaata |
3589107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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