View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_19 (Length: 464)
Name: NF11977_low_19
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_19 |
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| [»] chr7 (7 HSPs) |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 47544499 - 47544053
Alignment:
| Q |
18 |
aaaaacgcttcaacaatgaagaattttcacctcttaatgtagagacctaataagatttgaaagactaattaggatggatacagagatcagataagagaag |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47544499 |
aaaaatgcttcaacaatgaagaattttcacctcttaatgtagagacctaataagatttgaaagactaattaggatggatacagagatcagataagagaag |
47544400 |
T |
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| Q |
118 |
gcataagacttggatttaaaaagcatgcatgcagacctgtgtttcaagctcagtattcttagctatctttctatctctcgatcgtttagctgattcccta |
217 |
Q |
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| T |
47544399 |
gcataagacttggatttaaaaagcatgcatgcagacctgtgtttcaagctcagtattcttagctatctttctatctctcgatcgtttagctgattcccta |
47544300 |
T |
|
| Q |
218 |
ttttggagcatcctgaaaaggcaatgtcataaggcattaagaccatgtttggataagcaatttaagtaaacacacacttataacacaagtgtttatcatg |
317 |
Q |
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| T |
47544299 |
ttttggagcatcctgaaaaggcaatgtcataaggcattaagaccatgtttggataagcgatttaagcaaacacacacttataacacaagtgtttatcatg |
47544200 |
T |
|
| Q |
318 |
tcgtatgtgaaacatattgaactcctagaatattgttacctcttaagtcgttttgcatcggaagggttattgtctccattcatattaacctctccctgat |
417 |
Q |
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| T |
47544199 |
tcgtatgtgaaacatattgaactcctagaatattgttacctcttaagtcgttttgcatcggaagggttattgtctctattcatattaacctctccctgat |
47544100 |
T |
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| Q |
418 |
cagctttctcttcgtctgaggatccacttgtcgttgacctgattgct |
464 |
Q |
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| T |
47544099 |
cagctttctcttcgtctgaggatccacttgtcgttgacctgattgct |
47544053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 256
Target Start/End: Complemental strand, 47528314 - 47528128
Alignment:
| Q |
70 |
agatttgaaagactaattaggatggatacagagatcagataagagaaggcataagacttggatttaaaaag-catgcatgcagacctgtgtttcaagctc |
168 |
Q |
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| T |
47528314 |
agatttgaacgactaattaagatggacatagagatcagagaagaaaatgcagaagaaatggatctaaaaaaacatgcatgctgacctgtgtttcaagctc |
47528215 |
T |
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| Q |
169 |
agtattcttagctatctttctatctctcgatcgtttagctgattccctattttggagcatcctgaaaaggcaatgtcataaggcatta |
256 |
Q |
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| T |
47528214 |
agttaaatgagcttgctttcttcgtcttgagcgtctagctgattccctattagagagcatcctg-aaaggcaatgtcattaggcatta |
47528128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 348
Target Start/End: Original strand, 10281666 - 10281776
Alignment:
| Q |
233 |
aaaaggcaatgtcataaggcattaagaccatgtttggataagcaatttaagtaaacacacacttataacacaagtgtttatcatgtcgtatgtgaaacat |
332 |
Q |
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| T |
10281666 |
aaaaggcagtgtcattagatattaagatcatgtttggataaacaatttaattaaacaaa-----atagcacatgcgtttatcatgtcctatgagaaacac |
10281760 |
T |
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| Q |
333 |
attgaactcctagaat |
348 |
Q |
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| T |
10281761 |
attgaactcctagaat |
10281776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 47528388 - 47528335
Alignment:
| Q |
20 |
aaacgcttcaacaatgaagaattttcacctcttaatgtagagacctaataagat |
73 |
Q |
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| T |
47528388 |
aaacgctttaacaatgaagaattttcacctcttaattcagaaacctaataagat |
47528335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 47537902 - 47537849
Alignment:
| Q |
70 |
agatttgaaagactaattaggatggatacagagatcagataagagaaggcataa |
123 |
Q |
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| T |
47537902 |
agatttaaaagactaattaagatggatacagagatcagagaatagaaggcataa |
47537849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 462
Target Start/End: Complemental strand, 47527761 - 47527689
Alignment:
| Q |
387 |
ttgtctccattcatattaacctctccctgatcagctttctcttcgtctgaggatccacttgtcgttgacctgattg |
462 |
Q |
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| T |
47527761 |
ttgtctccattcatattaatctctcc---atcaccttcctcatcgtctgatgatccacttgttgttgacttgattg |
47527689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 47538229 - 47538183
Alignment:
| Q |
20 |
aaacgcttcaacaatgaagaattttcacctcttaatgtagagaccta |
66 |
Q |
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| T |
47538229 |
aaacgcgtcaacaacgaagaatgttcaccttttaatgtagagaccta |
47538183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 458
Target Start/End: Complemental strand, 101431 - 101340
Alignment:
| Q |
367 |
gttttgcatcggaagggttattgtctccattcatattaacctctccctgatcagctttctcttcgtctgaggatccacttgtcgttgacctg |
458 |
Q |
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| T |
101431 |
gttttgcatcagaagcgttcttgtctccattcatattaatctctccttgataagcctcatcttcgcctgaggatccacttgtcgttgacctg |
101340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 348
Target Start/End: Complemental strand, 101466 - 101435
Alignment:
| Q |
317 |
gtcgtatgtgaaacatattgaactcctagaat |
348 |
Q |
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| T |
101466 |
gtcgtatgtgaaacatattgaactcctagaat |
101435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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