View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11977_low_2 (Length: 878)
Name: NF11977_low_2
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 762; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 1 - 861
Target Start/End: Original strand, 43339463 - 43340329
Alignment:
| Q |
1 |
ctaacagagatgttaaggtgtccgacatgggatgttggtgagataatatgtggatttggagatggaattggtccaaaaatttgcaaccggaccatctgtt |
100 |
Q |
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| T |
43339463 |
ctaacagagatgttaaggtgtccgacatgggatgttggtgagataatatgtggatttggagatggaattggtccaaaaatttgcaaccggaccatctgtt |
43339562 |
T |
|
| Q |
101 |
ttgcagtaggaaattctgcaggtgcagccgcgaccatctgtttctgataccttctgctggctgcccgacgaaggagcagggttcttggtgnnnnnnnntt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43339563 |
ttgcagtaggaaattctgcaggtgcagccgcgaccatctgtttctgataccttctgctggctgcccgacgaaggagcagggttcttggtgaaaaaaaatt |
43339662 |
T |
|
| Q |
201 |
ctatttggtgctgtcaaatttgttccgtgatgctgaatatgatgaagattattgtggcagcagcttcgcagatttggagcaggctgccagctagagtgga |
300 |
Q |
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| T |
43339663 |
ctatttggtgctgtcaaatttgttccgtgatgctgaatatgatgaagattattgtggcagcagcttcgcagatttggagcaggctgccaactagagtgga |
43339762 |
T |
|
| Q |
301 |
attgcggagaagggaagtaataagagatgttcaccgacaatgttgtgtgtg--ctgctttagagaaattgaaacatctagccatttgtttgcaatttgct |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43339763 |
attgcggagaagggaagtaataagagatgttcaccgacaatgttgtgtgtgtgctgctttagagaaattgaaacatctagccatttgtttgcaacttgct |
43339862 |
T |
|
| Q |
399 |
cagagatgttggaagcgtagagcttgatttttaattggttgggagtgggggctgaaggtttgagatggtgatgtagtaaacaactttcattaattcaatc |
498 |
Q |
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| T |
43339863 |
cagagacgttggaagcgtggagcttgatttttaattggttgggagtgggggctgaaggtttgggatggtgatgtagtaaacaactttcattaattcaatc |
43339962 |
T |
|
| Q |
499 |
caatttgcaaaggtaagaaaagtnnnnnnngtatcgcatttattgtggttaacaacggcttggtgcatgtggttggagcgaaataatgttatttttaaca |
598 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43339963 |
caatttgcaaaggtaagaaaagtaaaaaaagtatcgcatttagtgtggttaacaacggcttggtgcatgtggttggagcgaaataatgttatttttaaca |
43340062 |
T |
|
| Q |
599 |
ggaaggttgcaaattatttagaggtggttgaccatatcagaagcctatcttggtcttggtttatgtgtaggg----agggattgaacacaaactttcgat |
694 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43340063 |
ggaaggttgcaaattatttagaggtggttgaccatatcaagagcctatcttggtcttggtttatgtgtagggagggagggattgaacacaaactttcgat |
43340162 |
T |
|
| Q |
695 |
ggtccgattggtggttgaatccacttgtttgtatccgtggtatatgatcgtcgactgcttttgatgttggtagtggctggttctgttttgctcatatcag |
794 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43340163 |
ggtccgattggtggttgaatccacttgtttgtatccgtggtatatgatcgtcgactgcttttgatgttggtagtggctggttctgttttgctcatatcag |
43340262 |
T |
|
| Q |
795 |
ttcttgtgcgtatgtagtgttcgcagggagctgaactgaagtgttgtggggcggtttatgtgctcat |
861 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43340263 |
ttcttgtgcgtatgtagtgttcgcagggagctgaactgaagtgttgtggggcggtttatgtgctcat |
43340329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 339 - 861
Target Start/End: Complemental strand, 1015088 - 1014567
Alignment:
| Q |
339 |
aatgttgtgtgtgctgctttagagaaattgaaacatctagccatttgtttgcaatttgctcagagatgttggaagcgtagagcttgatttttaattggtt |
438 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||||||| ||| || ||| | | ||||||||||| |||||| || |
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| T |
1015088 |
aatgttgtgtgtggtgctttagagaaattgaaacatctggccctttgtttgcatcttgctcaaagacgtcggatgtatggagcttgatttgtaattgatt |
1014989 |
T |
|
| Q |
439 |
gggagtgggggctgaaggtttgagatggtgatgtagtaaacaactttcattaattcaatccaatttgcaaaggtaagaaaagtnnnnnnngtatcgcatt |
538 |
Q |
| |
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|||||||| ||||||||||| | ||| || |||||| ||||||||| | || ||||||| |||||||| | ||||||||| || |||||||||| |
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|
| T |
1014988 |
gggagtggaggctgaaggttgg-gattgttatgtagcaaacaacttccttttattcaattcaatttgcgagggtaagaaaggtaaaaaaagtatcgcatt |
1014890 |
T |
|
| Q |
539 |
tattgtggttaacaacggcttggtgcatgtggttggagcgaaataatgttatttttaacaggaaggttgcaaattatttagaggtggttgaccatatcag |
638 |
Q |
| |
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|| ||||| ||||||| |||||||| || ||||||||||| |||||||| ||||||| || |||||| |||| ||||||||||||||| | ||||| |
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| T |
1014889 |
tagtgtggctaacaacagcttggtgtatttggttggagcgttataatgttctttttaaatggtaggttgtgaattgtttagaggtggttgatcctatcaa |
1014790 |
T |
|
| Q |
639 |
aagcctatcttggtcttggtttatgtgtagggagggattgaacacaaactttcgatggtccgattggtggttgaatccacttgtttgtatccgtggtata |
738 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||| ||||||||||||||||||||||||||||| | |||| |
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|
| T |
1014789 |
acacctatcttggtcttggtttatgtgtagggaggggttcaacacgaactttcgatgatcctattggtggttgaatccacttgtttgtatctgaagtatt |
1014690 |
T |
|
| Q |
739 |
tgatcgtcgactgcttttgatgttggtagtggctggttctgttttgctcatatcagttcttgtgcgtatgtagtgttcgcagggagctgaactgaagtgt |
838 |
Q |
| |
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||| ||||| || ||| ||||| ||||||||| |||| |||| ||| |||||||| |||||| | | ||||| ||||||||||||||||||| || |
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| T |
1014689 |
tgaacgtcgccttcttgcaatgtttgtagtggctctttctattttactcgtatcagtttctgtgcgggtctggtgtttgcagggagctgaactgaagggt |
1014590 |
T |
|
| Q |
839 |
tgtggggcggtttatgtgctcat |
861 |
Q |
| |
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|||||||| | || ||||||||| |
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|
| T |
1014589 |
tgtggggctggttctgtgctcat |
1014567 |
T |
|
Back To:
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