View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_22 (Length: 406)
Name: NF11977_low_22
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 255 - 396
Target Start/End: Complemental strand, 23809020 - 23808879
Alignment:
| Q |
255 |
aaatgggccaaaacccgggtattaaaccaacccgacccaagctactccttgagccagaaacatagaagaaaagctataaaacgataccgttttaaccttc |
354 |
Q |
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| T |
23809020 |
aaatgggccaaaacccgggtattaaaccaacccgacccaagctactccttgagccagaaacatagaagaaaagctataaaacgataccgttttaaccttc |
23808921 |
T |
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| Q |
355 |
ttcctcctccataaaccctaaaccctaaaagctgtatctctg |
396 |
Q |
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| T |
23808920 |
ttcctcctccataaaccctaaaccctaaaagctgtatttctg |
23808879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 23809098 - 23809026
Alignment:
| Q |
115 |
ctactgctgtatcgttgagaaagaagacaaatcctaatttttctgattttgcttctttaaaaatatatcaacc |
187 |
Q |
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| T |
23809098 |
ctactgctgtattgttgagaaagaagacaaatcctaatttttctgatttttcttttttaaaaatatatcaacc |
23809026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 23809173 - 23809111
Alignment:
| Q |
11 |
ataaaaagtttcttttagttgtttgaacatgcaatattgcacatgttatacaatttttatctt |
73 |
Q |
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| T |
23809173 |
ataaaaagttacttttaaatattttaacatgcaatattgcacatgttagacaaactttatctt |
23809111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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