View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11977_low_27 (Length: 385)
Name: NF11977_low_27
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 42292797 - 42293144
Alignment:
| Q |
15 |
atgaaggcatttatcagtggaaaagaattgtggtttacgtattgaattatatccagaaatgtctaaaacaatcgcgcacaatcctccaattgcatctttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42292797 |
atgaaggcatttatcagtggaaaagaattgtggtttacgtattgaattatatccagaaatgtctaaaacaatcgcgcacaatcctccaattgcatctttc |
42292896 |
T |
|
| Q |
115 |
atagttaggattcttagttatgctggaaatagcaaaatcttgactcaatcaggtgattcaagttctatgtttaaaaatatatataacttagttaaatgca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42292897 |
atagttaggattcttagttatgctggaaatagcaaaatcttgactcaatcaggtgattcaagttctatgtttaaaaatatatataacttagttaaatgca |
42292996 |
T |
|
| Q |
215 |
aatagtatttgatttaatagttagctatatagtattaatatttgtgttgatcttgatcttttccacactgatgtagaaataaaagataaacctcttagca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42292997 |
aatagtatttgatttaatagttagctatatagtattaatatttgtgttgatcttgatcttttccacactgatgtagaaataaaagataaacctcttagca |
42293096 |
T |
|
| Q |
315 |
ataaggatagctttgtgtgggagataggggttccattacctggaaaat |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42293097 |
ataaggatagctttgtgtgggagataggggttccattacctggaaaat |
42293144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University