View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_3 (Length: 839)
Name: NF11977_low_3
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 553; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 115 - 831
Target Start/End: Original strand, 32269598 - 32270313
Alignment:
| Q |
115 |
cgccctacatgtttttcaatgcagattagtcattgttaagcaacggttgatactttatactaatattatggagagnnnnnnnn-gaattactttatgcag |
213 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
32269598 |
cgccctacatgtttttcaatgcagattaatcattgttaagcaacggttgatactttatactaatattatggagagaaaaaaaatgaactactttatgcag |
32269697 |
T |
|
| Q |
214 |
caaacagcaaacggaacaacacatgcccctcnnnnnnntctaacaacactataactccaaagcacatgacatttgcagtagaccacattccatgattaca |
313 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32269698 |
caaacagcaaacggaacaacacatgcccctcaaaaaaatctaacaacactataactccaaagcacatgacatttgcagtagaccacattccatgattaca |
32269797 |
T |
|
| Q |
314 |
aattatatccccatatgaaatctccacactcaatcacactgatccaacggccaaaatctcactaaaatcacaaaacaatatgaagcaatgcaaatgctta |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32269798 |
aattatatccccatatgaaatctccacactcaatcacactgatccaacggccaaaatctcactaaaatcacaaaacaatatgaagcaatgcaaatgctta |
32269897 |
T |
|
| Q |
414 |
tgatctataacaactataaaatagcaatgatagttatactaaagttctaaataacatgcttttaaaagataaagtagaattaaactaaccgcctaaaatt |
513 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32269898 |
tgatctataacaactataaaatagcaatggtagttatactaaagttctaaataacatgcttttaaaagataaagtagaattaaactaaccgcctaaaatt |
32269997 |
T |
|
| Q |
514 |
attccatcataatttattttaaaattaattccaacgtgttattactct-nnnnnnnnnnnctaatctctaattataatatatccatcaatactccttatt |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32269998 |
attccatcataatttattttaaaattaattccaacgtgttattactctaaaaaaaaaaaactaatctctaattataatatatccatcaatactccttatt |
32270097 |
T |
|
| Q |
613 |
ttacnnnnnnngagggaactccttattttacttattttaagtatcgtatcacatatatggttcaaaaatca----aaataaataaactaatcaagaagga |
708 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32270098 |
ttactttttttgagggaactccttattttacttattttaagtatcgtatcacatatatggttcaaaaatcaaaataaataaataaactaatcaagaagga |
32270197 |
T |
|
| Q |
709 |
gtcctaatttccacctcctttcggtttcaatcagccctattagaaaattaatcaagtccggtagtaaaaaggaagaaagatatgtgtgactttttcaata |
808 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32270198 |
gtc-------ccacctcctttcggtttcaatcagccctattagaaaattaatcaagtccggtagtaaaaaggaagaaagatatgtgtgactttttcaata |
32270290 |
T |
|
| Q |
809 |
taagtcgtcctttctcctatgct |
831 |
Q |
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||||||||||||||||||||||| |
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| T |
32270291 |
taagtcgtcctttctcctatgct |
32270313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 32269438 - 32269534
Alignment:
| Q |
19 |
attgaatgcataaaattaagaaagttaaaggttgcattgcttaccaacaatgattgatccaagtggtaagaaacttagactaattaaatatatgatc |
115 |
Q |
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| T |
32269438 |
attgaatgcataaaattaagaaagttaaagattgcattgcttaccaacaatgattggtccaagtggtaagaaatttagactaattaaatatatgatc |
32269534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 32809840 - 32809908
Alignment:
| Q |
355 |
atccaacggccaaaatctcactaaaatcacaaaacaatatgaagcaatgcaaatgcttatgatctataa |
423 |
Q |
| |
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|||||||||||| || ||||| |||| |||||||| |||| |||| ||||||||||||||||||||| |
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| T |
32809840 |
atccaacggccacaagttcactcgaatcgcaaaacaacatgaggcaaagcaaatgcttatgatctataa |
32809908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 501
Target Start/End: Original strand, 32809921 - 32809962
Alignment:
| Q |
460 |
ctaaataacatgcttttaaaagataaagtagaattaaactaa |
501 |
Q |
| |
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| T |
32809921 |
ctaaataacttgctactaaaagataaagtagaattaaactaa |
32809962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 729 - 812
Target Start/End: Complemental strand, 4883968 - 4883885
Alignment:
| Q |
729 |
tcggtttcaatcagccctattagaaaattaatcaagtccggtagtaaaaaggaagaaagatatgtgtgactttttcaatataag |
812 |
Q |
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| T |
4883968 |
tcggtttcaattagccctattaggaaattaattatggctggtaataaaaagataaaagtatatgtgtgactttttcaatataag |
4883885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 721 - 803
Target Start/End: Complemental strand, 4875007 - 4874925
Alignment:
| Q |
721 |
acctcctttcggtttcaatcagccctattagaaaattaatcaagtccggtagtaaaaaggaagaaagatatgtgtgacttttt |
803 |
Q |
| |
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||||||| ||||||||||| ||| ||||||| |||||||||||| || | ||||||| || || ||||||||||||||||| |
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| T |
4875007 |
acctcctctcggtttcaattagctctattaggaaattaatcaagcttggcaataaaaagaaaaaatgatatgtgtgacttttt |
4874925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 721 - 812
Target Start/End: Original strand, 4646337 - 4646427
Alignment:
| Q |
721 |
acctcctttcggtttcaatcagccctattagaaaattaatcaagtccggtagtaaaaaggaagaaagatatgtgtgactttttcaatataag |
812 |
Q |
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| T |
4646337 |
acctcctgtcagtttcaattagccctattaggaaattaatcatggctggtaataaaaa-gaaaaaatgcatgcgtgactttttcaatataag |
4646427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 724 - 803
Target Start/End: Complemental strand, 4893798 - 4893719
Alignment:
| Q |
724 |
tcctttcggtttcaatcagccctattagaaaattaatcaagtccggtagtaaaaaggaagaaagatatgtgtgacttttt |
803 |
Q |
| |
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|||| ||||||||||| ||| ||||||| |||||||||||| | || | ||||| | || || ||||||||||||||||| |
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| T |
4893798 |
tcctctcggtttcaattagctctattaggaaattaatcaagccaggcaataaaatgaaaaaatgatatgtgtgacttttt |
4893719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 729 - 812
Target Start/End: Complemental strand, 4905197 - 4905114
Alignment:
| Q |
729 |
tcggtttcaatcagccctattagaaaattaatcaagtccggtagtaaaaaggaagaaagatatgtgtgactttttcaatataag |
812 |
Q |
| |
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||||||||||| | ||||||||| |||||| ||| | | |||| ||||||| | ||| | ||||||||||||||||||||||| |
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| T |
4905197 |
tcggtttcaattaaccctattaggaaattagtcatggctggtaataaaaagataaaaaaacatgtgtgactttttcaatataag |
4905114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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