View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_32 (Length: 334)
Name: NF11977_low_32
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 34817774 - 34817468
Alignment:
| Q |
12 |
gagatgaatgaaatattaaaatgacaacacattgtaaggtcgccgctttttattgaaataaaatctcaaccattaaacaagaggccggtgaggttatgag |
111 |
Q |
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| T |
34817774 |
gagatgaatgaaatattaaaatggcaacacattgtaaggtcgccgctttttattgaaataaaatctcaaccattaaacaagaggccggtgaggttatgag |
34817675 |
T |
|
| Q |
112 |
ctgtagcatgaacgtgtcacgagacaatttataaagtgttagttagttagttacactatgtatcagtacagtaatagtagtgtatttagttattagcatg |
211 |
Q |
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| T |
34817674 |
ctgtagcatgaacgtgtcacgagacaaaaaataaagtgttagttagttagttacactatggatcagtacagtaatagtagtgtatttagttattagcatg |
34817575 |
T |
|
| Q |
212 |
tggttgttggaagtttggcattttcaaccagttatttgtcccatttactgtctattcttcaacacaaacatgttgattcatccttcactttcaattaatg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34817574 |
tggttgttggaagtttggcattttcaaccagttatttgtcccatttactgtctattcttcaacacaaacatgttgattcatccttcactttcaattaatg |
34817475 |
T |
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| Q |
312 |
ttgcttc |
318 |
Q |
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||||||| |
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| T |
34817474 |
ttgcttc |
34817468 |
T |
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