View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_33 (Length: 332)
Name: NF11977_low_33
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 4787413 - 4787712
Alignment:
| Q |
18 |
gtcatggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcatataatccagtcaaatat |
117 |
Q |
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| T |
4787413 |
gtcatggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcatataatccagtcaaatat |
4787512 |
T |
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| Q |
118 |
aattgaacgaagcattagttccattttatagatcaagaataaattacggtttaatgcttctaggttttgtttgtgtgggtaatcttgatgttgttttgaa |
217 |
Q |
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| T |
4787513 |
aattgaacgaagcattagttccattttatagatcaagaataaattacggtttaatgcttctaggttttgtttgtgtgggtaatcttgatgttgttttgaa |
4787612 |
T |
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| Q |
218 |
atgttagattccctattcaaatttgtaagcatatataaataaataaatcaatggaacgatatatgttgggctttggaatcatcattagtaccatctctct |
317 |
Q |
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| T |
4787613 |
atgttagattccctattctaatttgtaagcatatataaataaataaatcaatggaacgatatatgttgggctttggaatcatcattagtaccatctctct |
4787712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 4782667 - 4782769
Alignment:
| Q |
18 |
gtcatggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcatataatccagtcaaatat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || ||| |||||| |||||||||||||||||| |
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| T |
4782667 |
gtcatggggaatggagggttatatgcatatcaaaaggaacacaaataaaaagtatggggtgtgtgctataaattcatgggcttataatccagtcaaatat |
4782766 |
T |
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| Q |
118 |
aat |
120 |
Q |
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||| |
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| T |
4782767 |
aat |
4782769 |
T |
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