View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_34 (Length: 330)
Name: NF11977_low_34
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 29791867 - 29792178
Alignment:
| Q |
1 |
gttatgtcactgtcacccttgacataggcactgaaacttggagttccacttagtttgcactcaggtgctgttatgctgtaccgaggttgaaagttctgat |
100 |
Q |
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| T |
29791867 |
gttatgtcattgtcacccttgacataggcactgaaacttggagttccacttagtttgcactcaggcgctgttatgctgtaccgaggttgaaatttctgat |
29791966 |
T |
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| Q |
101 |
aatgataggttggaaactcagcatgcagagcaattttctcacctgattcgagaaacataggagacaacatctgatcattgaagtatgagcttgattcaag |
200 |
Q |
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| T |
29791967 |
aatgataggttggaaactcagcatgtggagcaattttctcacctgattcgagaaacataggagacaacatctgatcattgcagtatgagcttgattcaag |
29792066 |
T |
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| Q |
201 |
ttcaagaagtttcctcttaggtatcagatagtgctcgttaaattgaacatccgactctcgagagtaaagtaaatcgaatctggtagcactctctattttt |
300 |
Q |
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| T |
29792067 |
ttccagaagtttcctctcaggtatcagatagtgctcgttaaattgaacatccgactctcgagagtcaagtaaatcgtatctggtagcactctctatttct |
29792166 |
T |
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| Q |
301 |
cccgaattaggt |
312 |
Q |
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| T |
29792167 |
cctgaattaggt |
29792178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 29791579 - 29791769
Alignment:
| Q |
31 |
ctgaaacttggagttccacttagtttgcactcaggtgctgttatgctgtaccgaggttgaaagttctgataatgataggttggaaactcagcatgcagag |
130 |
Q |
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| T |
29791579 |
ctgaaacttggagttccactcagtttgcagttgggtgctgttatactgtactgaggttgaaagttctgagaatgataggttggaaactcggcatgtggag |
29791678 |
T |
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| Q |
131 |
caattttctcacctgattcgagaaacataggagacaacatctgatcattgaagtatgagcttgattcaagttcaagaagtttcctcttagg |
221 |
Q |
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| T |
29791679 |
taagtctctctcccaattcgggaaacataggagacaccatctgatcattgaagtatgagccagattcaagttcaagaagtttcctcttagg |
29791769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 29791432 - 29791503
Alignment:
| Q |
154 |
aacataggagacaacatctgatcattgaagtatgagcttgattcaagttcaagaagtttcctcttaggtatc |
225 |
Q |
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| T |
29791432 |
aacataggaggcaacaaatgatcactgaaggatgagcttggttcaagttcaaggagtttcctcttaggtatc |
29791503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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