View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_35 (Length: 330)
Name: NF11977_low_35
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 32685366 - 32685049
Alignment:
| Q |
14 |
gagcagagaggcagcagcaagaggaggagccaagttgttaaaaaa------------------ctttgtaggaatgagattcacatgcttctcttcccgt |
95 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
32685366 |
gagcagaaaggcagcagcaagaggaggagccaagttgttaaaaaacttgacttgttgttttgtctttgtaggaatgagattgacatgcttctcttcccgt |
32685267 |
T |
|
| Q |
96 |
ttcacgttatcctgtaatcaatgtgaggctgaggttgcaacttgcatgcatcatcgttcataatcacactcaagaaaattaacagtgagagaagcaaggt |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32685266 |
ttcacgttatcctgtaatcaatgtgaggctgaggttgcaacttgcatgcatcatcgttcataatcacactcaagaaaattaacagtgagagaaacaaggt |
32685167 |
T |
|
| Q |
196 |
cttttacctacctttatggagacaggattattgtaaccagaaatcagacaagcaagcttcatttggcttcttttctatgctttatcatatctgagataga |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32685166 |
cttttacctacctttatggagacaggattattgtaaccagaaatcagacaagcaagcttcatttggcttcttttctatgctttatcatatcttagataga |
32685067 |
T |
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| Q |
296 |
tggattatattatacgtg |
313 |
Q |
| |
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|||||||||||||||||| |
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| T |
32685066 |
tggattatattatacgtg |
32685049 |
T |
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