View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_low_38 (Length: 317)

Name: NF11977_low_38
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_low_38
NF11977_low_38
[»] chr1 (3 HSPs)
chr1 (1-317)||(29791447-29791763)
chr1 (82-317)||(29791840-29792081)
chr1 (4-85)||(29791720-29791801)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 29791447 - 29791763
Alignment:
Q  1 aaatgatcactgaaggatgagcttggttcaagttcaaggagtttcctcataggtatctgttggatttcagtacattgaaaatctacttcgttaaacagag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29791447 aaatgatcactgaaggatgagcttggttcaagttcaaggagtttcctcttaggtatctgttggatttcagtacattgaaaatctacttcgttaaacagag 29791546  T
Q  101 atccatgagttacgtcacccttgacggaggtcctgaaacttggagttccactcagtttgcagttgggtgctgttatactgtactgaggttgaaagttctg 200  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29791547 atccatgagttacgtcacccttaccggaggtcctgaaacttggagttccactcagtttgcagttgggtgctgttatactgtactgaggttgaaagttctg 29791646  T
Q  201 agaatgataggttggaaactcggcatctggagtaagtctctctcccgattcgggaaacataggagacaccatctgatcattgaagtatgagccagattca 300  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29791647 agaatgataggttggaaactcggcatgtggagtaagtctctctcccaattcgggaaacataggagacaccatctgatcattgaagtatgagccagattca 29791746  T
Q  301 agttcaagaagtttcct 317  Q
    |||||||||||||||||    
T  29791747 agttcaagaagtttcct 29791763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 82 - 317
Target Start/End: Original strand, 29791840 - 29792081
Alignment:
Q  82 tctacttcgttaaacagagatccatgagttacgtca------cccttgacggaggtcctgaaacttggagttccactcagtttgcagttgggtgctgtta 175  Q
    ||||||||||||||||||||||||  ||||| ||||      ||||||||  |||  |||||||||||||||||||| |||||||| |  || |||||||    
T  29791840 tctacttcgttaaacagagatccagaagttatgtcattgtcacccttgacataggcactgaaacttggagttccacttagtttgcactcaggcgctgtta 29791939  T
Q  176 tactgtactgaggttgaaagttctgagaatgataggttggaaactcggcatctggagtaagtctctctcccgattcgggaaacataggagacaccatctg 275  Q
    | |||||| |||||||||| |||||| ||||||||||||||||||| |||| ||||| || | |||| || |||||| ||||||||||||||| ||||||    
T  29791940 tgctgtaccgaggttgaaatttctgataatgataggttggaaactcagcatgtggagcaattttctcacctgattcgagaaacataggagacaacatctg 29792039  T
Q  276 atcattgaagtatgagccagattcaagttcaagaagtttcct 317  Q
    ||||||| |||||||||  ||||||||||| |||||||||||    
T  29792040 atcattgcagtatgagcttgattcaagttccagaagtttcct 29792081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 29791720 - 29791801
Alignment:
Q  4 tgatcactgaaggatgagcttggttcaagttcaaggagtttcctcataggtatctgttggatttcagtacattgaaaatcta 85  Q
    |||||| ||||| ||||||  | |||||||||||| ||||||||| |||| ||||| |||| |||  |||||||||||||||    
T  29791720 tgatcattgaagtatgagccagattcaagttcaagaagtttcctcttaggcatctgatggagttctttacattgaaaatcta 29791801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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