View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_low_4 (Length: 740)

Name: NF11977_low_4
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_low_4
NF11977_low_4
[»] chr6 (14 HSPs)
chr6 (136-721)||(24122771-24123351)
chr6 (223-512)||(21384079-21384368)
chr6 (347-463)||(24122702-24122818)
chr6 (262-499)||(14510169-14510408)
chr6 (223-500)||(34445763-34446028)
chr6 (408-502)||(8338184-8338278)
chr6 (224-350)||(24121956-24122082)
chr6 (342-456)||(10344997-10345111)
chr6 (342-485)||(1699547-1699690)
chr6 (408-511)||(9871623-9871728)
chr6 (419-498)||(23107766-23107845)
chr6 (254-308)||(20763847-20763901)
chr6 (257-294)||(2264665-2264702)
chr6 (443-512)||(11117637-11117706)
[»] chr8 (14 HSPs)
chr8 (224-511)||(34240686-34240973)
chr8 (601-721)||(45169825-45169942)
chr8 (224-511)||(30996938-30997220)
chr8 (324-502)||(17465980-17466159)
chr8 (342-511)||(24115260-24115429)
chr8 (406-511)||(24118962-24119067)
chr8 (601-721)||(45166999-45167117)
chr8 (220-302)||(38667751-38667833)
chr8 (526-565)||(26513095-26513134)
chr8 (219-268)||(20991298-20991347)
chr8 (412-509)||(44134082-44134179)
chr8 (225-298)||(44134289-44134362)
chr8 (224-308)||(15568471-15568555)
chr8 (406-455)||(17919520-17919569)
[»] chr2 (17 HSPs)
chr2 (224-498)||(28699647-28699919)
chr2 (256-511)||(37185325-37185579)
chr2 (224-511)||(44900068-44900355)
chr2 (224-481)||(19937471-19937728)
chr2 (220-481)||(31753014-31753274)
chr2 (223-496)||(13515880-13516153)
chr2 (226-486)||(10291580-10291841)
chr2 (222-390)||(2548390-2548558)
chr2 (327-511)||(32315778-32315961)
chr2 (360-511)||(44898921-44899070)
chr2 (408-512)||(12495073-12495177)
chr2 (406-501)||(13312281-13312375)
chr2 (406-493)||(13304997-13305084)
chr2 (222-293)||(29480133-29480204)
chr2 (362-440)||(13794391-13794469)
chr2 (360-434)||(17369327-17369401)
chr2 (254-299)||(26383864-26383909)
[»] chr3 (14 HSPs)
chr3 (222-499)||(32889511-32889789)
chr3 (361-512)||(7434623-7434774)
chr3 (381-511)||(16139713-16139843)
chr3 (227-498)||(19276332-19276605)
chr3 (411-511)||(7770462-7770563)
chr3 (422-498)||(806050-806126)
chr3 (406-511)||(16233714-16233820)
chr3 (408-497)||(30554155-30554244)
chr3 (360-462)||(14753743-14753845)
chr3 (406-511)||(940576-940680)
chr3 (15-137)||(26970746-26970867)
chr3 (222-511)||(28426323-28426610)
chr3 (422-484)||(14259557-14259619)
chr3 (360-498)||(30610443-30610581)
[»] chr4 (16 HSPs)
chr4 (224-511)||(25935081-25935368)
chr4 (377-509)||(13857844-13857976)
chr4 (377-501)||(13869374-13869498)
chr4 (222-502)||(34050182-34050461)
chr4 (412-509)||(50051140-50051237)
chr4 (222-434)||(36539441-36539652)
chr4 (232-432)||(36543920-36544120)
chr4 (360-511)||(12194816-12194967)
chr4 (222-293)||(49022584-49022655)
chr4 (360-511)||(17397685-17397837)
chr4 (221-298)||(50051309-50051386)
chr4 (408-512)||(43854569-43854673)
chr4 (408-454)||(1676810-1676856)
chr4 (408-454)||(1683338-1683384)
chr4 (342-379)||(49022688-49022725)
chr4 (408-498)||(9157270-9157360)
[»] chr5 (11 HSPs)
chr5 (260-513)||(27649053-27649306)
chr5 (11-135)||(21926629-21926753)
chr5 (227-465)||(16696005-16696242)
chr5 (406-511)||(29810220-29810331)
chr5 (342-509)||(25918521-25918688)
chr5 (342-511)||(26067053-26067222)
chr5 (342-498)||(20568252-20568406)
chr5 (411-463)||(37654209-37654261)
chr5 (411-463)||(37551379-37551431)
chr5 (411-463)||(37606866-37606918)
chr5 (411-463)||(37779076-37779128)
[»] chr1 (9 HSPs)
chr1 (220-511)||(22224477-22224766)
chr1 (406-511)||(14434142-14434246)
chr1 (409-514)||(23353327-23353432)
chr1 (15-135)||(41100896-41101016)
chr1 (422-511)||(52909461-52909550)
chr1 (222-303)||(52909659-52909740)
chr1 (342-434)||(51183718-51183810)
chr1 (406-460)||(19453901-19453955)
chr1 (408-481)||(23348066-23348139)
[»] chr7 (12 HSPs)
chr7 (406-511)||(18298926-18299031)
chr7 (223-299)||(12257421-12257497)
chr7 (220-511)||(2591736-2592025)
chr7 (409-511)||(17345811-17345914)
chr7 (409-511)||(4157690-4157792)
chr7 (409-509)||(15583062-15583162)
chr7 (220-511)||(10301900-10302188)
chr7 (367-456)||(27809544-27809633)
chr7 (224-303)||(18298777-18298856)
chr7 (224-440)||(23738250-23738465)
chr7 (411-456)||(12257270-12257316)
chr7 (474-512)||(18310714-18310752)
[»] scaffold0838 (1 HSPs)
scaffold0838 (422-498)||(2657-2733)
[»] scaffold0832 (1 HSPs)
scaffold0832 (422-498)||(2688-2764)
[»] scaffold0474 (1 HSPs)
scaffold0474 (228-293)||(6329-6394)
[»] scaffold0044 (1 HSPs)
scaffold0044 (419-460)||(58790-58831)
[»] scaffold0102 (1 HSPs)
scaffold0102 (406-498)||(25412-25504)
[»] scaffold0374 (1 HSPs)
scaffold0374 (406-471)||(12328-12393)
[»] scaffold0056 (1 HSPs)
scaffold0056 (254-303)||(19094-19143)


Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 136 - 721
Target Start/End: Original strand, 24122771 - 24123351
Alignment:
Q  136 ataaagagctataaatacccatcttgggatcattataaaggcattacataaacaatttctaatattgtactgactacaagtatagttgtggaccgtcaat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||    
T  24122771 ataaagagctataaatacccatcttgggatcattataaaggcatcacataaacagtttctaatattgtactcactgcaagtacagttgtggaccgtcaat 24122870  T
Q  236 atattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggcaccgccttaacca 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| ||| |||||||||||||||||    
T  24122871 atattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggtctaagcacgctcttccagaggcaccgccttaacca 24122970  T
Q  336 gctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaataccc 435  Q
    ||||| ||||||||||||| ||||||||     ||||||||||| |||||||||| ||||| | | |||||||||| |||||||||||||||||||||||    
T  24122971 gctcctagaagcatctagagcttggtaa-----cttaaggcccaacttgcttggggattaagttacgctgaaacaatcccacaaagggctataaataccc 24123065  T
Q  436 ctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtacatataagtaaattcaatagcttcta 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24123066 ctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattctaatattgtactcactacaagtacatataagtaaattcaatagcttcta 24123165  T
Q  536 atcataacattatagaaaacaacatttctaatctttacaccaaaatcacttgggcaccaaatttctacaccaacatccctcatcattgatctcatcatct 635  Q
    |||||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24123166 atcataacattacagaaaacaacatttctcatctttgcaccaaaatcacctgggcaccaaatttctacaccaacatccctcatcattgatctcatcatct 24123265  T
Q  636 catcagcatagacccatctgcctgaagctgcatatggatttaaaagaggacatacattcctgagttctgagttcccatcttaaaaa 721  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24123266 catcagcatagacccatctgcctgaagctgcatatggatttaaaagaggacatacattcctgagttctgaggtcccatcttaaaaa 24123351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 223 - 512
Target Start/End: Complemental strand, 21384368 - 21384079
Alignment:
Q  223 gtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggc 322  Q
    ||||||||||||||||||| |||||   || ||||| ||||||||| |||||||||||||||||| ||||| | ||| ||| || | | || | | ||||    
T  21384368 gtggaccgtcaatatattcttaagggtctgaaagccttctagaaaggcttaggcgccctccagaatggctcctaaggactaggcacgcccttctagaggc 21384269  T
Q  323 accgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagg 422  Q
     |||||||| |||||| | |||||||||||||    | ||||| ||| ||| || || ||||||||||  |||| ||  | | |||||||||| |||| |    
T  21384268 gccgccttagccagcttctagaagcatctagaagcggataaaaagacataaagctcatcttgcttggggcttaagtcgcgttaaaacaagccctcaaaag 21384169  T
Q  423 gctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtacat 512  Q
    ||||||| |||| ||||| ||||||||| |||||||||||||| | ||| ||||||||||||| || ||||||||||| | |||||||||    
T  21384168 gctataattacctctcttgggatcattcccaaggcatcacaaacacagtaaaaaccctagattttattattgtactcattgcaagtacat 21384079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 347 - 463
Target Start/End: Original strand, 24122702 - 24122818
Alignment:
Q  347 catctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctcttaggatc 446  Q
    |||| ||| ||||||||||||||||||| |||| |||||||||| ||||| ||| ||||||||||||||| |||| ||||||||||||| |||| |||||    
T  24122702 catcaagagcttggtaaaatgacttaagacccaacttgcttggggattaagtcacgctgaaacaagcccataaagagctataaatacccatcttgggatc 24122801  T
Q  447 attctcaaggcatcaca 463  Q
    ||| | |||||||||||    
T  24122802 attataaaggcatcaca 24122818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 262 - 499
Target Start/End: Original strand, 14510169 - 14510408
Alignment:
Q  262 tagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggcaccgccttaaccagctcccagaagcatctagaccttggt 361  Q
    ||||||| |||| |||||||||| |||||||| ||||||||| |||  |||| ||| |||| |||||| ||| |||| | ||||||||||||| ||| ||    
T  14510169 tagaaaggcttaagcgccctccataagggctcctgaggcctaggcgtgctcttccagaggcgccgcctcaactagcttctagaagcatctagagcttagt 14510268  T
Q  362 aaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctctta--ggatcattctcaaggcat 459  Q
    |||| ||| || ||||||| |||||||||  |||| |   |   ||||||| ||||||||||||||||||||| | | ||  | ||||||||||||| ||    
T  14510269 aaaaagacatagggcccagtttgcttggggcttaagtttcgtaaaaacaagtccacaaagggctataaataccacccatatggaatcattctcaaggtat 14510368  T
Q  460 cacaaaaatagtcaaaaccctagattataatattgtactc 499  Q
       | ||| |||| |||||||||||| || ||||||||||    
T  14510369 ttaataaacagtctaaaccctagattctattattgtactc 14510408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 223 - 500
Target Start/End: Complemental strand, 34446028 - 34445763
Alignment:
Q  223 gtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggc 322  Q
    |||||||||||||||  |||||||| | || ||||||||||||||| |||||| |||||||||||||||||   | | ||| || | | || ||||||||    
T  34446028 gtggaccgtcaatat--tcctaagggcctgaaagccctctagaaaggcttaggtgccctccagaagggctccgaaagactaggcacgcccttccaaaggc 34445931  T
Q  323 accgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagg 422  Q
     || ||||| |||||| | ||||||           ||||||| ||| ||| ||||| ||||||||||  |||| ||| ||| ||  |||||||||||||    
T  34445930 gccaccttagccagcttctagaagcg----------ggtaaaaagacctaaagcccaacttgcttggggcttaagtcatgctaaacgaagcccacaaagg 34445841  T
Q  423 gctataaatacccctctt-aggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactca 500  Q
    ||||| |||||| |||||  ||||||||| |||||||||||||||| |||| |||||||| ||| || |||||||||||    
T  34445840 gctatgaatacctctcttggggatcattcccaaggcatcacaaaaacagtc-aaaccctatattctattattgtactca 34445763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 408 - 502
Target Start/End: Complemental strand, 8338278 - 8338184
Alignment:
Q  408 acaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcact 502  Q
    ||||| |||| || |||||||||||||||||||  || ||||||||||||||||||||||||| | ||||| ||| || ||||||||||||||||    
T  8338278 acaagtccacgaaaggctataaatacccctcttgagaacattctcaaggcatcacaaaaatagactaaaccttagtttctaatattgtactcact 8338184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 224 - 350
Target Start/End: Original strand, 24121956 - 24122082
Alignment:
Q  224 tggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggca 323  Q
    ||||||||||||||||||||||||   || |||||||||||| || |||||||| |||||||| ||| || ||||||||| |||| | || | | |||      
T  24121956 tggaccgtcaatatattcctaagggtctgaaagccctctagataggcttaggcgtcctccagatgggatcatgaggcctaggcgcgcccttctagaggtg 24122055  T
Q  324 ccgccttaaccagctcccagaagcatc 350  Q
    ||| ||||||||||||| |||||||||    
T  24122056 ccgtcttaaccagctcctagaagcatc 24122082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 342 - 456
Target Start/End: Complemental strand, 10345111 - 10344997
Alignment:
Q  342 agaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctctta 441  Q
    ||||||||||||| ||| ||||||  ||||||||||||||||||||| | ||||| | | |   |||||||||||||||||  |||||||||| | |||     
T  10345111 agaagcatctagagcttagtaaaaatacttaaggcccagcttgcttgtggattaagttaggtaaaaacaagcccacaaaggattataaataccacccttg 10345012  T
Q  442 ggatcattctcaagg 456  Q
    |||| ||||||||||    
T  10345011 ggattattctcaagg 10344997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 342 - 485
Target Start/End: Complemental strand, 1699690 - 1699547
Alignment:
Q  342 agaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctctta 441  Q
    |||||||||||||    ||||||| ||| ||| ||||| |||||||| |  |||  ||| ||| ||||||| ||||||||||||||||| ||||| |||     
T  1699690 agaagcatctagaagcgggtaaaaagacctaaagcccaacttgcttgaggcttaggtcacgctaaaacaagtccacaaagggctataaacaccccacttg 1699591  T
Q  442 ggatcattctcaaggcatcacaaaaatagtcaaaaccctagatt 485  Q
     ||||||||| |||| |||||  ||| |||| ||||||||||||    
T  1699590 agatcattcttaaggtatcacgcaaacagtctaaaccctagatt 1699547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 408 - 511
Target Start/End: Complemental strand, 9871728 - 9871623
Alignment:
Q  408 acaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcac--aaaaatagtcaaaaccctagattataatattgtactcactaca 505  Q
    |||||||||||||||||||||||||||||||||  ||  ||||||||||||| ||  ||| | | | ||||||||||  |   |||||||||||||||||    
T  9871728 acaagcccacaaagggctataaatacccctcttgagagtattctcaaggcatgacctaaacagattaaaaaccctagtcttagatattgtactcactaca 9871629  T
Q  506 agtaca 511  Q
    ||||||    
T  9871628 agtaca 9871623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 419 - 498
Target Start/End: Original strand, 23107766 - 23107845
Alignment:
Q  419 aagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtact 498  Q
    ||||||||||||||||||||||  || | ||||||| |||||||| ||| |||  |||||||||||| || |||||||||    
T  23107766 aagggctataaatacccctcttgagagctttctcaatgcatcacataaacagtgtaaaccctagattctattattgtact 23107845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 20763847 - 20763901
Alignment:
Q  254 aagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgc 308  Q
    ||||||||||||||| || || ||||||| |||||||||| ||||||||| ||||    
T  20763847 aagccctctagaaaggctcagacgccctctagaagggctcctgaggcctatgcgc 20763901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 2264665 - 2264702
Alignment:
Q  257 ccctctagaaagacttaggcgccctccagaagggctct 294  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  2264665 ccctctaaaaagactcaggcgccctccagaagggctct 2264702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 512
Target Start/End: Original strand, 11117637 - 11117706
Alignment:
Q  443 gatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtacat 512  Q
    |||||||||||||||||||   |||||| | ||||||||| ||  |||||| |||||||| |||||||||    
T  11117637 gatcattctcaaggcatcatttaaatagactaaaccctagtttcaaatattatactcactgcaagtacat 11117706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 3e-56; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 224 - 511
Target Start/End: Original strand, 34240686 - 34240973
Alignment:
Q  224 tggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggca 323  Q
    ||||| |||||||||||||||||| | |  ||||||||| ||||| |||||| ||||||||||||||||| |||| || | |||| | || ||| |||      
T  34240686 tggactgtcaatatattcctaagggcctaaaagccctctggaaaggcttaggtgccctccagaagggctcctgagtcccaggcgcgcccttccagaggtg 34240785  T
Q  324 ccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaaggg 423  Q
    |||||||| ||||   | ||||||||||||| |  ||||||| ||| ||| |||||| ||| |||||  |||| ||| |  |||||||||||||||||||    
T  34240786 ccgccttagccagtgtctagaagcatctagaaccgggtaaaaagacctaaagcccagattggttggggcttaagtcacgtggaaacaagcccacaaaggg 34240885  T
Q  424 ctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
    ||||||||||||||||| |||||||||||||||||||||| ||| |||| |||||||||||| || ||||||||||||| ||||||||    
T  34240886 ctataaatacccctcttgggatcattctcaaggcatcacacaaacagtctaaaccctagattctattattgtactcactgcaagtaca 34240973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 601 - 721
Target Start/End: Complemental strand, 45169942 - 45169825
Alignment:
Q  601 tacaccaacatccctcatcattgatctcatcatctcatcagcatagacccatctgcctgaagctgcatatggatttaaaagaggacatacattcctgagt 700  Q
    ||||||||||||||||||| |||||||||||   |||||||||||||||| ||||||  ||||||||||| |||| ||||||||||||||||||||||||    
T  45169942 tacaccaacatccctcatctttgatctcatc---tcatcagcatagacccgtctgcccaaagctgcatatagattgaaaagaggacatacattcctgagt 45169846  T
Q  701 tctgagttcccatcttaaaaa 721  Q
    |||||| ||||||||||||||    
T  45169845 tctgaggtcccatcttaaaaa 45169825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 224 - 511
Target Start/End: Complemental strand, 30997220 - 30996938
Alignment:
Q  224 tggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggca 323  Q
    |||||||| ||||||||||||||| |  | | ||||||||||||| ||| |||||||||||||||||||| ||||  ||| | || | || ||| ||||     
T  30997220 tggaccgttaatatattcctaagggctcgaatgccctctagaaaggctttggcgccctccagaagggctcatgagatctaggtgcgcccttccagaggcg 30997121  T
Q  324 ccgcct-taaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagg 422  Q
    |||||| ||   |||| | ||||||||||||| ||| |||||| |||||||| ||||||      |||  |||| ||| |   ||||||||| |  ||||    
T  30997120 ccgcctctattaagcttctagaagcatctagagcttagtaaaaagacttaagacccagc------ggggcttaagtcacgtaaaaacaagccaatgaagg 30997027  T
Q  423 gctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
    ||||||||||||||||||  |||||||||||| |||||||||||| |  | ||||||||| || |||||||||||| ||| ||||||||    
T  30997026 gctataaatacccctctttagatcattctcaaagcatcacaaaaacaaactaaaccctagtttctaatattgtacttactgcaagtaca 30996938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 324 - 502
Target Start/End: Original strand, 17465980 - 17466159
Alignment:
Q  324 ccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaaggg 423  Q
    |||||||| ||||||   ||||||||||||| || ||||||| ||| ||| ||||||||||||||||  |||| ||| |||||||||||||||||||  |    
T  17465980 ccgccttagccagcttatagaagcatctagaactgggtaaaaagacctaaagcccagcttgcttggggcttaagtcacgctgaaacaagcccacaaaaag 17466079  T
Q  424 ctat-aaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcact 502  Q
     ||| ||||| |||||||  |||||||| ||| |||| ||| ||| || | |||| |||| || ||||||||||||||||    
T  17466080 ttataaaatatccctcttgagatcattcccaaagcatgacataaaaagactaaactctagtttctaatattgtactcact 17466159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 342 - 511
Target Start/End: Original strand, 24115260 - 24115429
Alignment:
Q  342 agaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctctta 441  Q
    ||||||||||||| ||| |||| | |||||||| |||||||| |||  |  |||| ||| |   ||||||| ||| | |||||||||||||| |||||||    
T  24115260 agaagcatctagagcttagtaataagacttaagacccagcttacttaaggcttaagtcacgagaaaacaagaccatagagggctataaatacacctctta 24115359  T
Q  442 ggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
     || |||| |||||||||| || ||| |||| |||||||||||| || ||||||||||||| ||||||||    
T  24115360 agagcattatcaaggcatctcataaacagtctaaaccctagattctactattgtactcactgcaagtaca 24115429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 406 - 511
Target Start/End: Original strand, 24118962 - 24119067
Alignment:
Q  406 aaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactaca 505  Q
    ||||||||||| | |||||||||||||| ||||||  || ||||||||||||||| || |||||||| |||||||||||| || ||||| ||||||| ||    
T  24118962 aaacaagcccatagagggctataaatacacctcttgagagcattctcaaggcatctcataaatagtctaaaccctagattctactattgcactcactgca 24119061  T
Q  506 agtaca 511  Q
    ||||||    
T  24119062 agtaca 24119067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 601 - 721
Target Start/End: Complemental strand, 45167117 - 45166999
Alignment:
Q  601 tacaccaacatccctcatcattgatctcatcatctcatcagcatagacccatctgcctgaagctgcatatggatttaaaag-aggacatacattcctgag 699  Q
    |||||||| |||||||||| ||||||||||| |   ||||||||  ||||||||||| || ||||||||| ||||| |||| ||||| |||||||| |||    
T  45167117 tacaccaatatccctcatctttgatctcatctt---atcagcatcaacccatctgcccgaggctgcatatagatttgaaagaaggacgtacattcccgag 45167021  T
Q  700 ttctgagttcccatcttaaaaa 721  Q
    ||||||| | ||||||||||||    
T  45167020 ttctgaggttccatcttaaaaa 45166999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 220 - 302
Target Start/End: Original strand, 38667751 - 38667833
Alignment:
Q  220 gttgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcct 302  Q
    ||||||||||||| ||||||||||||||    | | ||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  38667751 gttgtggaccgtccatatattcctaagggttcgaatgccctctagaaaggcttatgcgccctccagaagggctcatgaggcct 38667833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 526 - 565
Target Start/End: Original strand, 26513095 - 26513134
Alignment:
Q  526 atagcttctaatcataacattatagaaaacaacatttcta 565  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26513095 atagcttctaatcataacattatagaaaacaacatttcta 26513134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 20991298 - 20991347
Alignment:
Q  219 agttgtggaccgtcaatatattcctaaggacatgcaagccctctagaaag 268  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||||||    
T  20991298 agttgtggaccgttaatatattccaaagggcatgcaagccctctagaaag 20991347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 412 - 509
Target Start/End: Complemental strand, 44134179 - 44134082
Alignment:
Q  412 gcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagta 509  Q
    |||||||||| |||||||||||| || ||  |||||||||| |||||| | | ||||| || ||| |||| ||| || ||||||||||||| ||||||    
T  44134179 gcccacaaagagctataaataccactattgagatcattctctaggcattatataaataatctaaatcctaaattctattattgtactcactgcaagta 44134082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 44134362 - 44134289
Alignment:
Q  225 ggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgag 298  Q
    |||||||||||||||||||||||   |  |||| ||||||||||  ||||| ||||||||||||||||| ||||    
T  44134362 ggaccgtcaatatattcctaagggtctaaaagcactctagaaaggtttaggtgccctccagaagggctcctgag 44134289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 15568471 - 15568555
Alignment:
Q  224 tggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgc 308  Q
    |||||||||||||||||  |||||   || ||||| | ||||||| || |||||| |||||||||||||| ||||| ||||||||    
T  15568471 tggaccgtcaatatatttttaagggtctgaaagccttttagaaaggctaaggcgctctccagaagggctcctgaggactaagcgc 15568555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 455
Target Start/End: Original strand, 17919520 - 17919569
Alignment:
Q  406 aaacaagcccacaaagggctataaatacccctcttaggatcattctcaag 455  Q
    |||||||| ||| || |||||||||||||||||||  |||||||||||||    
T  17919520 aaacaagctcacgaatggctataaatacccctcttcagatcattctcaag 17919569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 7e-51; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 224 - 498
Target Start/End: Complemental strand, 28699919 - 28699647
Alignment:
Q  224 tggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggca 323  Q
    |||||||||||||||||||||||| |  | | ||||||||||||| |||||||||||||||||||||||| ||||||||| |||| | || ||| ||||     
T  28699919 tggaccgtcaatatattcctaagggctcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgccctcccagaggcg 28699820  T
Q  324 ccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaaggg 423  Q
    || ||| | | |||| | ||||||||||||| ||| ||||||  |||||||| |||||||||||| |  |||| ||| ||  |||||||| |||||||||    
T  28699819 ccacctcatctagcttctagaagcatctagagcttagtaaaaatacttaagg-ccagcttgcttgtggcttaagtcacgcgaaaacaagcacacaaaggg 28699721  T
Q  424 ctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtact 498  Q
    |||||||||||||||||  ||||||||||||||||| || |||| || | ||||||||| || ||||||||||||    
T  28699720 ctataaatacccctcttgagatcattctcaaggcatgac-aaaacaggctaaaccctagtttttaatattgtact 28699647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 256 - 511
Target Start/End: Complemental strand, 37185579 - 37185325
Alignment:
Q  256 gccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggcaccgccttaaccagctcccagaagcatctagac 355  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||| |||| | || ||  |||| |||||| ||| |||| | ||||| |||||||     
T  37185579 gccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgc-cttcctgaggcgccgcctcaactagcttctagaagtatctagag 37185481  T
Q  356 cttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctcttaggatcattctcaag 455  Q
    ||| |||||| |||||||  |||||||||||||||  |||| ||| |   |||||||||   ||||||||||||||||||||||| |||||||||||||     
T  37185480 cttagtaaaaagacttaaaacccagcttgcttggggcttaagtcacgtaaaaacaagccttgaaagggctataaatacccctcttgggatcattctcaaa 37185381  T
Q  456 gcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
    ||||| || ||| |||  |||||||||||| || ||||||| ||||| ||| ||||    
T  37185380 gcatctcataaacagtttaaaccctagattctattattgtattcactgcaaataca 37185325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 224 - 511
Target Start/End: Complemental strand, 44900355 - 44900068
Alignment:
Q  224 tggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggca 323  Q
    ||||| ||||||||||||| ||||||  | | ||||||||||||| |||||||| | |  ||| | |||| | ||||||| |||  | ||  || ||||     
T  44900355 tggactgtcaatatattccaaaggactcgaatgccctctagaaaggcttaggcgtcttttagaggtgctccttaggcctaggcgtgcccttacagaggcg 44900256  T
Q  324 ccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaaggg 423  Q
    |||||| ||  |||| | ||||||||||||| | | |||||||||||||||||| ||||||||||||| |||| |||  |  ||||||||||| ||||||    
T  44900255 ccgcctcaattagcttctagaagcatctagagcatagtaaaatgacttaaggccaagcttgcttgggacttaagtcacacgaaaacaagcccataaaggg 44900156  T
Q  424 ctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
     |||||||||||||||| |||||||||||||||||||||  ||| |  | |||| |||| || |||||||||||| | | ||||||||    
T  44900155 ttataaatacccctcttgggatcattctcaaggcatcacttaaacaaactaaactctagtttctaatattgtacttaatgcaagtaca 44900068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 224 - 481
Target Start/End: Complemental strand, 19937728 - 19937471
Alignment:
Q  224 tggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggca 323  Q
    |||||||| |||||||||| |||| |  | |  |||| ||||||| |||  |||||||| |||||||||| |  ||| || |||| | || ||| ||||     
T  19937728 tggaccgttaatatattcccaagggctcgaataccctatagaaaggcttgagcgccctctagaagggctcctacggcataggcgcgcccttccagaggcg 19937629  T
Q  324 ccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaaggg 423  Q
    |||||| ||| |||| | ||||||||||| | ||| ||||||| |  ||||||||| ||||||||||  |||| |||  |  ||||||||||||||||||    
T  19937628 ccgcctcaactagcttctagaagcatctacaacttagtaaaattaagtaaggcccaacttgcttggggcttaagtcacacgaaaacaagcccacaaaggg 19937529  T
Q  424 ctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaacccta 481  Q
    ||||||||| ||||||| ||||||||| |||||||||||| ||| |||| ||||||||    
T  19937528 ctataaataaccctcttgggatcattcccaaggcatcacataaacagtctaaacccta 19937471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 220 - 481
Target Start/End: Original strand, 31753014 - 31753274
Alignment:
Q  220 gttgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaa 319  Q
    |||||| ||||||||||||||||||| | |  | | ||||||||||||| || ||| |||||||| ||||||||   ||||||| |||| | || | | |    
T  31753014 gttgtgcaccgtcaatatattcctaaaggctcgaatgccctctagaaaggctaaggagccctccataagggctcacaaggcctaggcgcgccct-ctaga 31753112  T
Q  320 ggcaccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaa 419  Q
    |||  ||||||||| | || | ||||||||| ||| ||| |||||| ||||||||||||| ||| ||||||  |||| ||| |    |||||||||||||    
T  31753113 ggcgtcgccttaactaacttcaagaagcatccagagcttagtaaaaagacttaaggcccatctttcttggggcttaagtcatgaaagaacaagcccacaa 31753212  T
Q  420 agggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaacccta 481  Q
    ||||| ||||||| ||||||| ||||||||||||| ||||| || ||| |||| ||||||||    
T  31753213 agggccataaatatccctcttgggatcattctcaaagcatctcataaacagtctaaacccta 31753274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 223 - 496
Target Start/End: Complemental strand, 13516153 - 13515880
Alignment:
Q  223 gtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggc 322  Q
    |||||||||| |||||||||||||  |  | | ||| | ||||||| |||||||| ||||||||||||||| ||||||||| | |  | ||  || ||||    
T  13516153 gtggaccgtcgatatattcctaagagctcgaatgccatatagaaaggcttaggcgtcctccagaagggctcatgaggcctaggtgtgccctttcagaggc 13516054  T
Q  323 accgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagg 422  Q
     ||| || ||| |  | | | ||||||||||| ||| |||||| ||||||| ||||| ||| ||||||  |||| ||| |   |||||| |||||||||     
T  13516053 gccgtctcaactaatttctaaaagcatctagagcttagtaaaaagacttaaagcccaactttcttggggcttaagtcaggtaaaaacaatcccacaaaga 13515954  T
Q  423 gctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgta 496  Q
    ||||||||||||||||||  |||||||||||||   |||  |||| |||| ||||| |||||| ||||||||||    
T  13515953 gctataaatacccctcttgagatcattctcaagatgtcatgaaaacagtctaaaccttagattctaatattgta 13515880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 226 - 486
Target Start/End: Original strand, 10291580 - 10291841
Alignment:
Q  226 gaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggcacc 325  Q
    |||||||||||||||||||||| | |  || |||||||||||  || |||| ||||| |||||||||||||| |||||  | | | || ||   |||  |    
T  10291580 gaccgtcaatatattcctaagggcctaaaaaccctctagaaatgctcaggcaccctctagaagggctcttgaagcctagacacgcccttcctggggcgtc 10291679  T
Q  326 gccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaa-gggc 424  Q
    |||||| ||| || |  |||||||| ||| |   |||||| ||||||| ||||||||||||| ||  |||| ||  ||| ||||||| ||||||| ||||    
T  10291680 gccttagccaacttctggaagcatccagaaccgagtaaaaagacttaaagcccagcttgcttagggcttaagtcgcgctaaaacaagtccacaaaagggc 10291779  T
Q  425 tataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagatta 486  Q
     ||||||||| ||||| ||||||||||| |||||||  | ||| |||| |||||||||||||    
T  10291780 cataaataccactcttgggatcattctcgaggcatctgataaacagtctaaaccctagatta 10291841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 222 - 390
Target Start/End: Original strand, 2548390 - 2548558
Alignment:
Q  222 tgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaagg 321  Q
    |||||||| ||| ||||||||||||| |    | ||| ||||||||| || | ||||||||||||| ||||| ||||||||| | || | || ||| |||    
T  2548390 tgtggaccatcagtatattcctaagggctcaaatgccttctagaaaggctcaagcgccctccagaacggctcctgaggcctaggtgcgcccttccagagg 2548489  T
Q  322 caccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttggg 390  Q
    | |||||| |||  ||| | ||||||||||||| ||| |||||| ||| ||||||||||||||||||||    
T  2548490 cgccgcctcaacttgcttctagaagcatctagagcttagtaaaaagacataaggcccagcttgcttggg 2548558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 327 - 511
Target Start/End: Complemental strand, 32315961 - 32315778
Alignment:
Q  327 ccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggcta 426  Q
    ||||| |||||| |||||||||||||||     |||||| ||| ||| | ||||||||||||||   |||  || ||| |||||||||||||||||||||    
T  32315961 ccttagccagcttccagaagcatctagaatcaagtaaaaagacctaaagtccagcttgcttggggcctaagccacgctaaaacaagcccacaaagggcta 32315862  T
Q  427 taaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
    |||||||  | ||| ||| |||||||||||||||| || || ||||  ||||||||||   | ||||||||||||| ||||||||    
T  32315861 taaatacgacccttgggaccattctcaaggcatcaaaacaacagtc-taaccctagatacgattattgtactcactgcaagtaca 32315778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 360 - 511
Target Start/End: Original strand, 44898921 - 44899070
Alignment:
Q  360 gtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcat 459  Q
    |||||||||||||||||||| |||| |||||  |||| | | ||  ||||||||||| |||||||||  | |||||||||| ||||||||||||||||||    
T  44898921 gtaaaatgacttaaggcccaacttgtttggggcttaagtaacgcgaaaacaagcccataaagggcta--agtacccctcttgggatcattctcaaggcat 44899018  T
Q  460 cacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
    |||  ||| |  | ||||| ||| || |||||||||||  ||||||||||||    
T  44899019 cacttaaacaaactaaaccgtagtttctaatattgtacctactacaagtaca 44899070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 408 - 512
Target Start/End: Original strand, 12495073 - 12495177
Alignment:
Q  408 acaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaag 507  Q
    |||||||||  |||||| |||||||||||||||  ||||||||||||||| |||| |||| || | ||| ||||| || |||||||| ||||||| ||||    
T  12495073 acaagcccaagaagggcgataaatacccctcttgagatcattctcaaggcttcacgaaaacagactaaatcctagtttctaatattgcactcactgcaag 12495172  T
Q  508 tacat 512  Q
    |||||    
T  12495173 tacat 12495177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 406 - 501
Target Start/End: Complemental strand, 13312375 - 13312281
Alignment:
Q  406 aaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcac 501  Q
    |||||||| |||||| |||||||||||||||| || |||||||||||||| || |||||||| || | ||| ||||| || |||||||||||||||    
T  13312375 aaacaagctcacaaacggctataaataccccttttgggatcattctcaagacaccacaaaaacagactaaa-cctagtttctaatattgtactcac 13312281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 406 - 493
Target Start/End: Complemental strand, 13305084 - 13304997
Alignment:
Q  406 aaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatatt 493  Q
    |||||||||||||||||||||||||| ||  | || |||||||||||||| |||||||| || || | ||||||||| || |||||||    
T  13305084 aaacaagcccacaaagggctataaatgcctatattgggatcattctcaagacatcacaacaacagactaaaccctagtttctaatatt 13304997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 29480133 - 29480204
Alignment:
Q  222 tgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctc 293  Q
    ||||||| || ||||||||||||||| | || ||| |||||| |||| || |||||| ||||||||||||||    
T  29480133 tgtggacagttaatatattcctaagggcctgaaagtcctctataaaggctcaggcgctctccagaagggctc 29480204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 362 - 440
Target Start/End: Complemental strand, 13794469 - 13794391
Alignment:
Q  362 aaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctctt 440  Q
    |||| ||||||| || |||||| ||||||  |||| ||| || ||||||||||| |||| || ||||||||||||||||    
T  13794469 aaaaagacttaaagcgcagcttccttggggcttaagtcacgcggaaacaagccctcaaaaggttataaatacccctctt 13794391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 360 - 434
Target Start/End: Original strand, 17369327 - 17369401
Alignment:
Q  360 gtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacc 434  Q
    ||||||||||||||||||||  |||||||||| || | ||| |   |||||||| ||| ||||||||||||||||    
T  17369327 gtaaaatgacttaaggcccaagttgcttgggactttagtcatgagaaaacaagctcacgaagggctataaatacc 17369401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 26383864 - 26383909
Alignment:
Q  254 aagccctctagaaagacttaggcgccctccagaagggctcttgagg 299  Q
    ||||||||||||| | ||||| ||||||||||||||||| ||||||    
T  26383864 aagccctctagaagggcttagacgccctccagaagggctattgagg 26383909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 222 - 499
Target Start/End: Original strand, 32889511 - 32889789
Alignment:
Q  222 tgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaagg 321  Q
    |||||| |||||||||||| |||||  | || |||| |||||||||| ||||| || ||||||||||||||| || |   || ||||   || ||| |||    
T  32889511 tgtggagcgtcaatatatttctaagagcctgaaagctctctagaaaggcttagacgtcctccagaagggctcatgggatttaggcgcgtccttccagagg 32889610  T
Q  322 caccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaag 421  Q
    | ||||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||| ||| |   |||| | | ||  |||||||| |||||||    
T  32889611 cgccgccttaaccagcttctagaagcatctagagcttggtaaaatgacttaagacccagctttctttgagcttaagttacgcaaaaacaagctcacaaag 32889710  T
Q  422 ggctataaatacccctctt-aggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactc 499  Q
    ||||||||||||||||||| |||||||||||||||||||| || ||| |||| |||||||| ||| || ||||||||||    
T  32889711 ggctataaatacccctctttaggatcattctcaaggcatcgcataaacagtctaaaccctatattctattattgtactc 32889789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 361 - 512
Target Start/End: Original strand, 7434623 - 7434774
Alignment:
Q  361 taaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatc 460  Q
    ||||| ||| ||| ||||||||||||||||  |||| ||| |||||| ||||| ||||||| |||||||||||| ||||| |||||||||||||||||||    
T  7434623 taaaaagacctaaagcccagcttgcttggggcttaagtcacgctgaagcaagctcacaaagtgctataaatacctctcttgggatcattctcaaggcatc 7434722  T
Q  461 acaaaaatagtcaaaaccctagattataatattgtactcactacaagtacat 512  Q
    ||| ||| ||||||||||||||||| || | ||||||||||||||| |||||    
T  7434723 acataaacagtcaaaaccctagattctattgttgtactcactacaattacat 7434774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 381 - 511
Target Start/End: Complemental strand, 16139843 - 16139713
Alignment:
Q  381 cttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccct 480  Q
    ||||||||||  |||| ||| ||| |||||| |||||||||||||||||||||| |  || ||||||||||||||||||| || | | |||| |||||||    
T  16139843 cttgcttggggcttaagtcacgctaaaacaatcccacaaagggctataaataccacgtttgggatcattctcaaggcatctcatagacagtctaaaccct 16139744  T
Q  481 agattataatattgtactcactacaagtaca 511  Q
    ||||| |||||||||||||||| ||| ||||    
T  16139743 agattctaatattgtactcactgcaaataca 16139713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 227 - 498
Target Start/End: Original strand, 19276332 - 19276605
Alignment:
Q  227 accgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggcaccg 326  Q
    |||| ||||||||||||||||   |  ||||||||||| |||  ||||||||||||||||||||||| |||||| || ||||   |    || | | |||    
T  19276332 accgacaatatattcctaagggactaaaagccctctaggaaggtttaggcgccctccagaagggctcatgaggcttaggcgcgtccccttaacgacgccg 19276431  T
Q  327 ccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaac--aagcccacaaagggc 424  Q
    ||| ||| | || | ||||||||||||| | |||||||| ||| ||| ||||| | || |||||  |||| | | ||| |||   ||||||| |||||||    
T  19276432 cctcaactaacttctagaagcatctagaacctggtaaaaagacctaaagcccaacatgtttggggcttaagttacgctaaaaacaaagcccagaaagggc 19276531  T
Q  425 tataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtact 498  Q
    |||||||||| |||||| ||||||||| |||||||| || ||| |||| |||||||||||| ||  ||||||||    
T  19276532 tataaataccactcttacgatcattctgaaggcatctcataaacagtctaaaccctagattctaccattgtact 19276605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 411 - 511
Target Start/End: Complemental strand, 7770563 - 7770462
Alignment:
Q  411 agcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtc-aaaaccctagattataatattgtactcactacaagta 509  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||  ||  ||| ||||||||| |||||| ||||||||||||| ||||||    
T  7770563 agcccacaaaaggctataaataccactcttgggatcattctcaaggcatctcattaacggtctaaaaccctatattatattattgtactcactgcaagta 7770464  T
Q  510 ca 511  Q
    ||    
T  7770463 ca 7770462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 498
Target Start/End: Original strand, 806050 - 806126
Alignment:
Q  422 ggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtact 498  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||| |||| |||||||||||| || |||||||||    
T  806050 ggctataaataccactcttaggagcattctcaaggcatcacataaacagtctaaaccctagattctattattgtact 806126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 406 - 511
Target Start/End: Complemental strand, 16233820 - 16233714
Alignment:
Q  406 aaacaagcccacaaagggctataaatacccc-tcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactac 504  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||||||| |||||||| ||| || | ||||| ||| || | |||||||||||| | |    
T  16233820 aaacaagctcacaaagggctataaataccccctcttagaatcattctcaatgcatcacataaacagactaaaccgtagtttcttatattgtactcagtgc 16233721  T
Q  505 aagtaca 511  Q
    |||||||    
T  16233720 aagtaca 16233714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 408 - 497
Target Start/End: Original strand, 30554155 - 30554244
Alignment:
Q  408 acaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtac 497  Q
    |||||||||| ||||||||||||||||||||||  ||  ||||||||||||||||  ||| || | |||||||||||| || ||||||||    
T  30554155 acaagcccacgaagggctataaatacccctctttagagtattctcaaggcatcacctaaacagcctaaaccctagattctattattgtac 30554244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 360 - 462
Target Start/End: Original strand, 14753743 - 14753845
Alignment:
Q  360 gtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcat 459  Q
    ||||||||||||||||||||  |||||||||  |||| ||| |   | |||||||||  ||||||||||||||||||||||  || ||||||||||| ||    
T  14753743 gtaaaatgacttaaggcccaaattgcttggggcttaagtcacggaaatacaagcccatgaagggctataaatacccctcttgagagcattctcaaggtat 14753842  T
Q  460 cac 462  Q
    |||    
T  14753843 cac 14753845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 511
Target Start/End: Original strand, 940576 - 940680
Alignment:
Q  406 aaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactaca 505  Q
    ||||||||||||  | ||||||||||||||| |||  ||||||||||||| ||| || |||| || | ||||||||| ||  ||||||||||||||| ||    
T  940576 aaacaagcccacgcaaggctataaatacccc-cttgagatcattctcaagacatgaccaaaagagactaaaccctagtttcaaatattgtactcactgca 940674  T
Q  506 agtaca 511  Q
    ||||||    
T  940675 agtaca 940680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 26970746 - 26970867
Alignment:
Q  15 ggagcagagattcctgacatgtacataccgaggaaatagttcctcgaaattacgtctatttaa-cgagaaacaatggtttctcggaattttttggtcgga 113  Q
    ||||||||||||||||||| || ||||| |||||||| |||||| ||||  || | ||||| | | |||||||| | || |||| ||||| |||||||||    
T  26970746 ggagcagagattcctgacacgtgcatac-gaggaaattgttccttgaaaa-acctttattttagcaagaaacaaagtttcctcgaaatttgttggtcgga 26970843  T
Q  114 attgccttcgtttcttgtagtgat 137  Q
    ||| ||||| ||||||||||||||    
T  26970844 attaccttcatttcttgtagtgat 26970867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 222 - 511
Target Start/End: Original strand, 28426323 - 28426610
Alignment:
Q  222 tgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaagg 321  Q
    |||||| ||| ||||||||| ||||| |  | | ||||||||||||| || ||||| ||||||||||||||||| |||| ||  ||  |||| ||  |||    
T  28426323 tgtggatcgtaaatatattcttaagggctcgaatgccctctagaaaggctaaggcgtcctccagaagggctcttaaggcttagacgtgctctccc--agg 28426420  T
Q  322 caccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaag 421  Q
    | |||||| ||| | || | ||||||||||||| ||  |||||| ||||||| |||||  || ||||||  |||| ||  |   || |||||||||| |     
T  28426421 cgccgcctcaactaacttctagaagcatctagaactcagtaaaaagacttaaagcccacattacttgggttttaagtctcgggaaaccaagcccacagat 28426520  T
Q  422 ggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
    | || ||||||| ||||||  || || ||||||| |||| || ||| |||| |||||||| ||| || |||| |||||||  ||||||||    
T  28426521 gactgtaaatacacctcttgagagcactctcaagacatctcataaacagtctaaaccctaaattctattattatactcaccgcaagtaca 28426610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 422 - 484
Target Start/End: Complemental strand, 14259619 - 14259557
Alignment:
Q  422 ggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagat 484  Q
    |||||||||||||   ||| |||| ||||| |||||||| ||||||||||| |||||||||||    
T  14259619 ggctataaataccatccttgggataattcttaaggcatctcaaaaatagtctaaaccctagat 14259557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 360 - 498
Target Start/End: Complemental strand, 30610581 - 30610443
Alignment:
Q  360 gtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcat 459  Q
    |||||| |||||| | | |||||||||||||| |||| ||| ||  ||| ||| |||||||  ||||||||||||  |||||  |||||| ||||| |||    
T  30610581 gtaaaaagacttatgcctcagcttgcttgggacttaagtcacgcgaaaataagtccacaaaaagctataaatacctttcttaatatcattttcaagacat 30610482  T
Q  460 cacaaaaatagtcaaaaccctagattataatattgtact 498  Q
    ||| |||| |  | ||||||||| || ||||||| ||||    
T  30610481 cacgaaaacaaactaaaccctagtttttaatattatact 30610443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 3e-44; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 224 - 511
Target Start/End: Original strand, 25935081 - 25935368
Alignment:
Q  224 tggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggca 323  Q
    |||||||||||||||||||||||| | |  ||||||||||||||| | |||||||||| |||||||||||  || ||||| |||| |  | ||| ||||     
T  25935081 tggaccgtcaatatattcctaagggcctaaaagccctctagaaaggcataggcgcccttcagaagggctcaagaagcctaggcgcgccattccagaggcg 25935180  T
Q  324 ccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaaggg 423  Q
    ||||||||| ||||| | ||||||||||||| |   |||||| ||| ||| || ||||||||||| |  |||| ||| ||| |||||| ||||||||||     
T  25935181 ccgccttaatcagcttctagaagcatctagaaccacgtaaaaagacctaaagctcagcttgcttgaggcttaagtcacgctaaaacaaacccacaaagga 25935280  T
Q  424 ctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
    |||||||| || |||| ||||||||||||||| |||| || |||  ||| |||||||||||| || ||||||||||| | ||||||||    
T  25935281 ctataaattccactctcaggatcattctcaagtcatctcataaacggtctaaaccctagattctattattgtactcattgcaagtaca 25935368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 377 - 509
Target Start/End: Original strand, 13857844 - 13857976
Alignment:
Q  377 ccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaa 476  Q
    ||||||||||||||  |||| ||| ||| | ||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||||| |||| |||    
T  13857844 ccagcttgcttggggcttaagtcacgctaacacaagcccacaaagggctataaataccacccttaggatcattctcaaagcatctcaaaaacagtctaaa 13857943  T
Q  477 ccctagattataatattgtactcactacaagta 509  Q
    ||||||||| || ||||||||||||| ||||||    
T  13857944 ccctagattttattattgtactcactgcaagta 13857976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 377 - 501
Target Start/End: Original strand, 13869374 - 13869498
Alignment:
Q  377 ccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaa 476  Q
    ||||||||||||||  |||| ||| | | | ||||||||||||||||||||||||||| | ||||||||||||||||| ||||| || ||| |||| |||    
T  13869374 ccagcttgcttggggcttaagtcacgttaacacaagcccacaaagggctataaataccacccttaggatcattctcaaagcatctcataaacagtctaaa 13869473  T
Q  477 ccctagattataatattgtactcac 501  Q
    ||||| ||| || ||||||||||||    
T  13869474 ccctaaattttattattgtactcac 13869498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 222 - 502
Target Start/End: Complemental strand, 34050461 - 34050182
Alignment:
Q  222 tgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaagg 321  Q
    |||||||||||||||||||||| ||| | ||   ||| |||||||||  | ||||||||| || ||||||||||||||||    ||||  || | | | |    
T  34050461 tgtggaccgtcaatatattccttagggcttgactgccatctagaaaggttcaggcgcccttcaaaagggctcttgaggccaggacgcatcctccaagatg 34050362  T
Q  322 caccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaag 421  Q
    | |||||| ||| || | | |||||||||| ||  || |||||||| |||||| |||| ||||||||||  |||| ||| ||  |||||||| |||||||    
T  34050361 cgccgcctcaactaggttctagaagcatctggagtttagtaaaatgtcttaagacccatcttgcttggggcttaagtcacgcaaaaacaagctcacaaag 34050262  T
Q  422 ggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcact 502  Q
    | ||||||||||| | |||  |||||||||||| |||| ||| ||| |||| ||||||||| || | ||||||||||||||    
T  34050261 gactataaatacctcgcttgagatcattctcaaagcattacataaacagtctaaaccctagtttct-atattgtactcact 34050182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 412 - 509
Target Start/End: Complemental strand, 50051237 - 50051140
Alignment:
Q  412 gcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagta 509  Q
    ||||||||||| ||||||||||| |||||  |||||||||| |||||| | | |||||||| |||||||||||| || |||||||||| || ||||||    
T  50051237 gcccacaaaggactataaataccactcttgagatcattctctaggcattatataaatagtctaaaccctagattctattattgtactcgctgcaagta 50051140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 222 - 434
Target Start/End: Complemental strand, 36539652 - 36539441
Alignment:
Q  222 tgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaagg 321  Q
    ||||||| |||||||||||||||||| | |  || |||||||||||| | |||||||||||| ||||||||| ||  ||||| |||| | || ||| |||    
T  36539652 tgtggactgtcaatatattcctaagggcctaaaatccctctagaaaggcgtaggcgccctcccgaagggctcctggagcctaggcgcgcccttccagagg 36539553  T
Q  322 caccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaag 421  Q
    | || ||||| |  ||| | ||||||||||||| |    | ||| ||| ||| ||||| ||||||||||  |||| ||| ||| |||||||| || |||     
T  36539552 cgccaccttagcatgcttctagaagcatctagaaccgaattaaaagacctaaagcccaacttgcttggggtttaagtcatgct-aaacaagctcataaaa 36539454  T
Q  422 ggctataaatacc 434  Q
    |||||||||||||    
T  36539453 ggctataaatacc 36539441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 232 - 432
Target Start/End: Complemental strand, 36544120 - 36543920
Alignment:
Q  232 caatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggcaccgcctta 331  Q
    |||| ||||||||||||| |  ||  ||||||||||| ||||||||||||  |||||||||| |||  |||||| || | || | | |||| ||  ||||    
T  36544120 caatctattcctaaggacttaaaattcctctagaaaggcttaggcgccctttagaagggctcctgaaacctaagtgcgcccttctagaggcgccatctta 36544021  T
Q  332 accagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaat 431  Q
     ||| || | ||||||||||||| |  | ||||| ||||||| ||||| ||||||||||  |||| ||| ||| |||||||| || ||| ||||||||||    
T  36544020 gccaacttctagaagcatctagaaccggataaaaagacttaacgcccaacttgcttgggccttaagtcacgctaaaacaagctcataaaaggctataaat 36543921  T
Q  432 a 432  Q
    |    
T  36543920 a 36543920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 511
Target Start/End: Original strand, 12194816 - 12194967
Alignment:
Q  360 gtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcat 459  Q
    |||||| |||||||||| |||||| ||||||  ||||  || |   ||||||||||||| |||||||||||||| ||||||  || |||||| ||  |||    
T  12194816 gtaaaaagacttaaggcgcagcttacttggggcttaagccacgagaaaacaagcccacagagggctataaatacacctcttgagagcattctaaaaacat 12194915  T
Q  460 cacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
    | || ||| |||| |||||  ||||| || ||||||||||||| ||||||||    
T  12194916 ctcataaacagtctaaacctaagattctattattgtactcactgcaagtaca 12194967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 49022584 - 49022655
Alignment:
Q  222 tgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctc 293  Q
    |||||||||||||||||||| ||||| | |  |||||||||||||||  ||| |||||||||||||||||||    
T  49022584 tgtggaccgtcaatatattcttaagggcctaaaagccctctagaaaggtttaagcgccctccagaagggctc 49022655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 511
Target Start/End: Complemental strand, 17397837 - 17397685
Alignment:
Q  360 gtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaa-acaagcccacaaagggctataaatacccctcttaggatcattctcaaggca 458  Q
    ||||||||||||||||||| | |||||||||  |||| ||| |   || ||||||||||||| ||||||||||| ||||||  ||| |||||| ||  ||    
T  17397837 gtaaaatgacttaaggccctggttgcttggggcttaagtcatgggaaacacaagcccacaaaaggctataaataaccctctcgggagcattctgaaatca 17397738  T
Q  459 tcacaaaaatagt-caaaaccctagattataatattgtactcactacaagtaca 511  Q
    ||||||||| ||| | |||||||||| | | |||||||||  ||||||||||||    
T  17397737 tcacaaaaacagtactaaaccctaga-tctgatattgtaccaactacaagtaca 17397685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 50051386 - 50051309
Alignment:
Q  221 ttgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgag 298  Q
    ||||||||||||||||||||||||||| | |  || ||||||||||||  ||||| | ||||||||||||||| ||||    
T  50051386 ttgtggaccgtcaatatattcctaagggcctaaaatccctctagaaaggtttaggtgtcctccagaagggctcctgag 50051309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 512
Target Start/End: Complemental strand, 43854673 - 43854569
Alignment:
Q  408 acaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaag 507  Q
    |||||| ||||| | ||||||||||||||||||| || |||||||||| ||||||   ||||| | ||||||||  || |||| ||||||||| | ||||    
T  43854673 acaagctcacaatgagctataaatacccctcttaagagcattctcaagacatcacctgaatagactaaaccctaatttctaattttgtactcattgcaag 43854574  T
Q  508 tacat 512  Q
    |||||    
T  43854573 tacat 43854569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 454
Target Start/End: Original strand, 1676810 - 1676856
Alignment:
Q  408 acaagcccacaaagggctataaatacccctcttaggatcattctcaa 454  Q
    |||||||||| ||||||||||||||||||||||| || |||||||||    
T  1676810 acaagcccacgaagggctataaatacccctcttaagagcattctcaa 1676856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 454
Target Start/End: Original strand, 1683338 - 1683384
Alignment:
Q  408 acaagcccacaaagggctataaatacccctcttaggatcattctcaa 454  Q
    |||||||||| ||||||||||||||||||||||| || |||||||||    
T  1683338 acaagcccacgaagggctataaatacccctcttaagagcattctcaa 1683384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 49022688 - 49022725
Alignment:
Q  342 agaagcatctagaccttggtaaaatgacttaaggccca 379  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  49022688 agaagcatctagagcttggtaaaatgacttaaggccca 49022725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 498
Target Start/End: Complemental strand, 9157360 - 9157270
Alignment:
Q  408 acaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtact 498  Q
    |||||||||||||| || ||||||| || ||||  || |||||||||| ||||||| ||| |||| ||||| |||||| || | |||||||    
T  9157360 acaagcccacaaagagcaataaatatccatcttgagagcattctcaagacatcacataaagagtctaaaccttagattctattgttgtact 9157270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 6e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 260 - 513
Target Start/End: Original strand, 27649053 - 27649306
Alignment:
Q  260 tctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggcaccgccttaaccagctcccagaagcatctagaccttg 359  Q
    ||||||||| ||||||| || ||||||||||||| |||||| || |||| ||||  || ||||   |||||||| |||| | |||||||||| || ||||    
T  27649053 tctagaaaggcttaggcaccttccagaagggctcatgaggcttaggcgcgctctttcagaggcgttgccttaactagcttctagaagcatctggagcttg 27649152  T
Q  360 gtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcat 459  Q
    |||||||||||||| | ||| ||||| |||   |||| ||| ||  ||||||||||||||||||||||||||||  || || |||||||||| |   |||    
T  27649153 gtaaaatgacttaatgtccaacttgcgtggagcttaagtcacgcgaaaacaagcccacaaagggctataaatacgacttttgggatcattctgagaacat 27649252  T
Q  460 cacaaaaatagtcaaaaccctagattataatattgtactcactacaagtacata 513  Q
    |||| ||| |||| |||||||||||| || ||||||| ||||| ||||||||||    
T  27649253 cacataaagagtctaaaccctagattctattattgtattcactgcaagtacata 27649306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 21926629 - 21926753
Alignment:
Q  11 aggaggagcagagattcctgacatgtacataccgaggaaatagttcctcgaaattacgtctatttaacgagaaacaatggtttctcggaattttttggtc 110  Q
    ||||| ||||||||||||||||||||   ||||||||||| |||| |||| |||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  21926629 aggagcagcagagattcctgacatgtgtgtaccgaggaaaaagttgctcggaattacctctatttagcgagaaacaatggttcctcggaattttttggtc 21926728  T
Q  111 ggaattgccttcgtttcttgtagtg 135  Q
    |||||| | ||| ||||||||||||    
T  21926729 ggaattactttcatttcttgtagtg 21926753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 227 - 465
Target Start/End: Original strand, 16696005 - 16696242
Alignment:
Q  227 accgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggcaccg 326  Q
    |||||||||||||||||||||   |   |||||||||||||| |||||||||| ||||||||||||| ||| ||||| |||| | || ||| || | |||    
T  16696005 accgtcaatatattcctaagggtctaagagccctctagaaaggcttaggcgccttccagaagggctcctgaagcctaggcgcgcccttccagagacgccg 16696104  T
Q  327 ccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggcta 426  Q
    ||| | |||||| | |||| ||||||||     |||||| ||| ||| |||||||||||||||   |||| ||| ||| |||||||||||||| ||||||    
T  16696105 cctcagccagcttctagaaacatctagaatcaagtaaaaagacctaaagcccagcttgcttggagcttaagtcacgctaaaacaagcccacaaggggcta 16696204  T
Q  427 taaatacccctcttaggatcattctcaaggcatcacaaa 465  Q
    || ||||||| ||| ||||||||||||||| ||| ||||    
T  16696205 tagatacccc-cttgggatcattctcaaggtatctcaaa 16696242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 406 - 511
Target Start/End: Original strand, 29810220 - 29810331
Alignment:
Q  406 aaacaagcccacaaagggctataaatacccctctta------ggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactc 499  Q
    |||||||||||||||||||| ||||||||||||||       |||||||||||||| ||||||||||| |||| ||||||||  || |||||||||||||    
T  29810220 aaacaagcccacaaagggctttaaatacccctcttgatcttgggatcattctcaagacatcacaaaaacagtctaaaccctaatttctaatattgtactc 29810319  T
Q  500 actacaagtaca 511  Q
    ||| ||||||||    
T  29810320 actgcaagtaca 29810331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 342 - 509
Target Start/End: Original strand, 25918521 - 25918688
Alignment:
Q  342 agaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctctta 441  Q
    |||||||||||   |||| |||||||||||||||| || ||| |||| |  |||| ||| ||  ||||||| ||||||||| |||||||||  | ||||     
T  25918521 agaagcatctaatgcttgataaaatgacttaaggcacaacttacttgaggcttaagtcacgcgaaaacaagtccacaaaggactataaatattcatcttg 25918620  T
Q  442 ggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagta 509  Q
    |||||||||||||||||||||| ||| || | ||||  ||  ||||||||||||||||||| ||||||    
T  25918621 ggatcattctcaaggcatcacataaacagactaaactttactttataatattgtactcactgcaagta 25918688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 342 - 511
Target Start/End: Complemental strand, 26067222 - 26067053
Alignment:
Q  342 agaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctctta 441  Q
    ||||||||||||| |  | ||||| ||| ||| ||| |||||| |||||  |||| ||| ||  |||||||||||| | ||| |||||||||| | |||     
T  26067222 agaagcatctagaaccagataaaaagacctaaagcctagcttgtttggggcttaagtcacgcaaaaacaagcccaccatgggttataaataccacccttt 26067123  T
Q  442 ggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
    |||||||| |||||| ||| || ||| |||| ||||| ||||||||| ||||||| ||||  ||||||||    
T  26067122 ggatcattatcaaggaatctcataaacagtctaaaccatagattatattattgtattcacagcaagtaca 26067053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 342 - 498
Target Start/End: Original strand, 20568252 - 20568406
Alignment:
Q  342 agaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctctta 441  Q
    ||||||||||||| ||| |||||| ||| ||||||||  ||||||||||  |||| ||| |   ||||||||||||||||||||||||||||| |  ||     
T  20568252 agaagcatctagagcttagtaaaaagacgtaaggcccgacttgcttgggccttaagtca-gtaaaaacaagcccacaaagggctataaataccaccattg 20568350  T
Q  442 ggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtact 498  Q
     ||||||||||||||  ||  ||||| | || ||| ||||||||||| |||||||||    
T  20568351 agatcattctcaaggtgtctgaaaaacaatctaaa-cctagattatattattgtact 20568406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 463
Target Start/End: Original strand, 37654209 - 37654261
Alignment:
Q  411 agcccacaaagggctataaatacccctcttaggatcattctcaaggcatcaca 463  Q
    |||||||||||||||||||||||| || ||| ||||||||| |||||||||||    
T  37654209 agcccacaaagggctataaataccactattaagatcattcttaaggcatcaca 37654261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 463
Target Start/End: Original strand, 37551379 - 37551431
Alignment:
Q  411 agcccacaaagggctataaatacccctcttaggatcattctcaaggcatcaca 463  Q
    |||||||||||||||||||||||| || ||  ||||||||| |||||||||||    
T  37551379 agcccacaaagggctataaataccactattgagatcattcttaaggcatcaca 37551431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 463
Target Start/End: Original strand, 37606866 - 37606918
Alignment:
Q  411 agcccacaaagggctataaatacccctcttaggatcattctcaaggcatcaca 463  Q
    |||||||||||| ||||||||||| || ||  |||||||||||||||||||||    
T  37606866 agcccacaaaggactataaataccactattgagatcattctcaaggcatcaca 37606918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 463
Target Start/End: Original strand, 37779076 - 37779128
Alignment:
Q  411 agcccacaaagggctataaatacccctcttaggatcattctcaaggcatcaca 463  Q
    |||||||||||| ||||||||||| || ||  |||||||||||||||||||||    
T  37779076 agcccacaaaggactataaataccactattgagatcattctcaaggcatcaca 37779128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 6e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 220 - 511
Target Start/End: Complemental strand, 22224766 - 22224477
Alignment:
Q  220 gttgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaa 319  Q
    |||||||||||||||||||||||||||| |    |  |||||||||||| |||||||  |||||||||   ||||||||||||||| ||||  | ||| |    
T  22224766 gttgtggaccgtcaatatattcctaagggctcaaataccctctagaaaggcttaggcatcctccagaaaa-ctcttgaggcctaagagcaccattccaga 22224668  T
Q  320 ggcaccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaa 419  Q
    ||  ||| || ||| |||| | ||||||||||||| ||| |||||| ||||||||||||| |||||||||   |||| ||| |    | ||||| |||      
T  22224667 ggagccggctcaactagcttctagaagcatctagagcttagtaaaaagacttaaggcccaacttgcttggagcttaagtcacgagagagcaagctcacgg 22224568  T
Q  420 agggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
    |||||||||||||| ||||||  || ||||||||||||||| |||||| ||| | ||||||||||| || ||||||||||||  ||||||||    
T  22224567 agggctataaatacacctcttgagagcattctcaaggcatctcaaaaacagt-ataaccctagattctattattgtactcaccgcaagtaca 22224477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 511
Target Start/End: Complemental strand, 14434246 - 14434142
Alignment:
Q  406 aaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactaca 505  Q
    |||||||||||| ||| ||||||||||||| ||||| || |||||||||||||| || |||| |  | |||||| || |||  |||||||||||||| ||    
T  14434246 aaacaagcccacgaagagctataaatacccatcttaagagcattctcaaggcatgacgaaaacatactaaaccc-agtttaagatattgtactcactgca 14434148  T
Q  506 agtaca 511  Q
    ||||||    
T  14434147 agtaca 14434142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 409 - 514
Target Start/End: Original strand, 23353327 - 23353432
Alignment:
Q  409 caagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagt 508  Q
    ||||||||| || |||||||||||||||||||  ||||||||||| ||| | ||||||| |  | ||||||||| ||   |||||||| ||||| |||||    
T  23353327 caagcccacgaaaggctataaatacccctcttgagatcattctcagggcgtgacaaaaacatactaaaccctagtttcagatattgtattcactgcaagt 23353426  T
Q  509 acatat 514  Q
    ||||||    
T  23353427 acatat 23353432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 41101016 - 41100896
Alignment:
Q  15 ggagcagagattcctgacatgtacataccgaggaaatagttcctcgaaattacgtctatttaacgagaaacaatggtttctcggaattttttggtcggaa 114  Q
    ||||||||||||||||||| || |||||||||||||| |||||||| ||   | |   ||||  ||||||  | | || |||| ||||||||||||||||    
T  41101016 ggagcagagattcctgacacgtgcataccgaggaaattgttcctcggaaaatctttattttagtgagaaatcaagtttcctcgaaattttttggtcggaa 41100917  T
Q  115 ttgccttcgtttcttgtagtg 135  Q
    || ||||| ||||||||||||    
T  41100916 ttaccttcatttcttgtagtg 41100896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 511
Target Start/End: Complemental strand, 52909550 - 52909461
Alignment:
Q  422 ggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
    |||||||||||||||||||  || |||||||||||||| ||  ||| || | ||||||||| ||   |||||||||||||| ||||||||    
T  52909550 ggctataaatacccctcttgagagcattctcaaggcatgacctaaacagactaaaccctagttttagatattgtactcactgcaagtaca 52909461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 52909740 - 52909659
Alignment:
Q  222 tgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggccta 303  Q
    |||||||||||||| ||||||||| | ||   | |||||| |||||| ||||||||||||| |||||||||| ||| |||||    
T  52909740 tgtggaccgtcaatctattcctaaaggcacaaatgccctccagaaaggcttaggcgccctctagaagggctcctgaagccta 52909659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 342 - 434
Target Start/End: Complemental strand, 51183810 - 51183718
Alignment:
Q  342 agaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacc 434  Q
    |||||||||| || ||  |||||||||||||||||||| |||| |||||  |||| |||  |  |||||||||| |||||| |||||||||||    
T  51183810 agaagcatctggagctcagtaaaatgacttaaggcccaacttgtttggggcttaagtcacacaaaaacaagcccgcaaaggactataaatacc 51183718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 406 - 460
Target Start/End: Complemental strand, 19453955 - 19453901
Alignment:
Q  406 aaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatc 460  Q
    ||||||||||||||  ||||||||||||| | ||| |||||| ||||||||||||    
T  19453955 aaacaagcccacaataggctataaataccacccttgggatcagtctcaaggcatc 19453901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 481
Target Start/End: Original strand, 23348066 - 23348139
Alignment:
Q  408 acaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaacccta 481  Q
    |||||| ||| || |||||||||||||||||||  |||| |||||| ||||| ||||||| || | ||||||||    
T  23348066 acaagctcacgaaaggctataaatacccctcttgagatcgttctcagggcatgacaaaaacagactaaacccta 23348139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 406 - 511
Target Start/End: Original strand, 18298926 - 18299031
Alignment:
Q  406 aaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactaca 505  Q
    ||||||||||||||||||||||||||||| | ||||  || |||||||||||||| || |||||||| |||||||||||| || ||||||||||| | ||    
T  18298926 aaacaagcccacaaagggctataaataccacccttaaaattattctcaaggcatctcataaatagtctaaaccctagattctattattgtactcaatgca 18299025  T
Q  506 agtaca 511  Q
    ||||||    
T  18299026 agtaca 18299031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 12257497 - 12257421
Alignment:
Q  223 gtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgagg 299  Q
    ||||||||||||||||||| ||||| | || ||||||||||||||| || ||||||||||| |||||||||||||||    
T  12257497 gtggaccgtcaatatattcataagggcctgaaagccctctagaaaggctcaggcgccctccggaagggctcttgagg 12257421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 220 - 511
Target Start/End: Complemental strand, 2592025 - 2591736
Alignment:
Q  220 gttgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaa 319  Q
    ||||| |||||||||||||||||||||| |    |  |||||||||||| |||||||| |||||||||   ||| ||||||||| |||||| || | | |    
T  2592025 gttgtagaccgtcaatatattcctaagggctcaaataccctctagaaaggcttaggcgtcctccagaaaa-ctcctgaggcctaggcgcacccttctaga 2591927  T
Q  320 ggcaccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaa 419  Q
    |   |||||| ||| |||| | | ||||||||||| ||| |||||| |||||||||| || |||| ||||   |||| ||  |   |||||||  |||      
T  2591926 gatgccgcctcaactagcttctaaaagcatctagagcttagtaaaaagacttaaggcacaacttgtttggagcttaagtcctgagaaaacaagttcacgg 2591827  T
Q  420 agggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
    ||||||||| |||| ||||||  || |||| |||||||||| |||||| ||  | ||||||||||| || ||||||||||||| ||||||||    
T  2591826 agggctatatatacacctcttgagagcattgtcaaggcatctcaaaaacaga-ataaccctagattctattattgtactcactgcaagtaca 2591736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 409 - 511
Target Start/End: Complemental strand, 17345914 - 17345811
Alignment:
Q  409 caagcccacaaag-ggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaag 507  Q
    ||||||||||||  ||||||||||| ||||||| ||||||||| ||||||||| || ||| |||| |||||||||||   | ||||||||||||| ||||    
T  17345914 caagcccacaaaaaggctataaatatccctcttgggatcattcccaaggcatctcataaacagtctaaaccctagatacaattattgtactcactgcaag 17345815  T
Q  508 taca 511  Q
    ||||    
T  17345814 taca 17345811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 409 - 511
Target Start/End: Complemental strand, 4157792 - 4157690
Alignment:
Q  409 caagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagt 508  Q
    |||||||||  |||||||||||||| ||||||  || |||||||||||||||||| ||| | || ||||| || ||| || ||||||||||||| |||||    
T  4157792 caagcccacggagggctataaatacacctcttgagagcattctcaaggcatcacataaacaatctaaaccttaaattctattattgtactcactgcaagt 4157693  T
Q  509 aca 511  Q
    |||    
T  4157692 aca 4157690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 409 - 509
Target Start/End: Original strand, 15583062 - 15583162
Alignment:
Q  409 caagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagt 508  Q
    |||||||||  ||| | |||||||| ||||||| ||  ||||||||| ||||||| ||| |||| ||| |||||||| |||||||||||||||| |||||    
T  15583062 caagcccacggaggacaataaatacacctcttaagagaattctcaagccatcacataaacagtctaaagcctagattctaatattgtactcactccaagt 15583161  T
Q  509 a 509  Q
    |    
T  15583162 a 15583162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 220 - 511
Target Start/End: Complemental strand, 10302188 - 10301900
Alignment:
Q  220 gttgtggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaa 319  Q
    |||||||| || |||||||||||||||| |    |  |||||||||||| |||||||| |||||||||   ||||||||||| | |||||| || | | |    
T  10302188 gttgtggatcgccaatatattcctaagggctcaaataccctctagaaaggcttaggcgtcctccagaaaa-ctcttgaggccgaggcgcacccttcgaga 10302090  T
Q  320 ggcaccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaa 419  Q
    ||   ||||| ||| | || | ||||||||||||| |||  |||||  |||| ||||||| |||||||||  ||||| ||| |   |||||| | |||      
T  10302089 ggagtcgcctcaactatcttctagaagcatctagagcttaataaaaatacttgaggcccaacttgcttggagattaagtcacgagaaaacaaactcacgg 10301990  T
Q  420 agggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtactcactacaagtaca 511  Q
    || ||||||||||| ||||||  || ||||||||||||||| |||||| ||| | ||||| | ||| || ||||||||||||| ||||||||    
T  10301989 agagctataaatacacctcttgagagcattctcaaggcatctcaaaaacagt-ataaccc-atattctattattgtactcactgcaagtaca 10301900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 367 - 456
Target Start/End: Original strand, 27809544 - 27809633
Alignment:
Q  367 gacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaagggctataaatacccctcttaggatcattctcaagg 456  Q
    ||||||||||||| ||| ||||||| |||| ||| ||  |||||||||||| ||||| |||||||| || ||||  ||||||||||||||    
T  27809544 gacttaaggcccaactttcttgggagttaagtcatgcgaaaacaagcccactaagggttataaatatccatcttgagatcattctcaagg 27809633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 18298777 - 18298856
Alignment:
Q  224 tggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggccta 303  Q
    |||||||||||||||||||||||  |  | | ||||||||||||  || ||||| ||||||||||||||| |||||||||    
T  18298777 tggaccgtcaatatattcctaagagctcgaatgccctctagaaaagctcaggcgtcctccagaagggctcctgaggccta 18298856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 440
Target Start/End: Original strand, 23738250 - 23738465
Alignment:
Q  224 tggaccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctcttgaggcctaagcgcactctaccaaaggca 323  Q
    ||||||||||||||||| |||||||| |  ||  | ||||||||| || || || ||||||||||||||  | ||||||| ||||  ||  ||| |||||    
T  23738250 tggaccgtcaatatatttctaaggacttaaaaatcttctagaaaggctcagacgtcctccagaagggcttctaaggcctatgcgc-gtcccccagaggca 23738348  T
Q  324 ccgccttaaccagctcccagaagcatctagaccttggtaaaatgacttaaggcccagcttgcttgggaattaaatcaagctgaaacaagcccacaaaggg 423  Q
    ||| |||| |||||| | | || |||||||| || ||| ||| ||   || ||| |||||||||| || |||| ||| |||  ||| |||||||||||||    
T  23738349 ccgtcttagccagcttctaaaaacatctagaactgggtgaaaagatccaaagcctagcttgcttgagacttaagtcacgctataaccagcccacaaaggg 23738448  T
Q  424 ctataaatacccctctt 440  Q
     | |||||||| |||||    
T  23738449 ttgtaaataccactctt 23738465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 456
Target Start/End: Complemental strand, 12257316 - 12257270
Alignment:
Q  411 agcccacaaagg-gctataaatacccctcttaggatcattctcaagg 456  Q
    |||||||||||| |||||||||||| ||||| |||||||||||||||    
T  12257316 agcccacaaaggagctataaataccactcttgggatcattctcaagg 12257270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 474 - 512
Target Start/End: Original strand, 18310714 - 18310752
Alignment:
Q  474 aaaccctagattataatattgtactcactacaagtacat 512  Q
    |||||||||||| || |||||||||||||||||||||||    
T  18310714 aaaccctagattttattattgtactcactacaagtacat 18310752  T

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Target: scaffold0838 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 498
Target Start/End: Original strand, 2657 - 2733
Alignment:
Q  422 ggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtact 498  Q
    |||||||||||||||| ||| ||||||||||| ||||| |||||||||||   |||||||  || ||||||||||||    
T  2657 ggctataaataccccttttaagatcattctcacggcatgacaaaaatagtactaaccctaatttctaatattgtact 2733  T

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Target: scaffold0832 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 498
Target Start/End: Original strand, 2688 - 2764
Alignment:
Q  422 ggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtact 498  Q
    |||||||||||||||| ||| ||||||||||| ||||| |||||||||||   |||||||  || ||||||||||||    
T  2688 ggctataaataccccttttaagatcattctcacggcatgacaaaaatagtactaaccctaatttctaatattgtact 2764  T

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Target: scaffold0474 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 6329 - 6394
Alignment:
Q  228 ccgtcaatatattcctaaggacatgcaagccctctagaaagacttaggcgccctccagaagggctc 293  Q
    |||||||| ||||||||||| || | |  ||||||||||| ||||||||||||| |||||||||||    
T  6329 ccgtcaatctattcctaagggcacgaattccctctagaaatacttaggcgcccttcagaagggctc 6394  T

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Target: scaffold0044 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 460
Target Start/End: Original strand, 58790 - 58831
Alignment:
Q  419 aagggctataaatacccctcttaggatcattctcaaggcatc 460  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  58790 aagggctataaatacccctcttgggatcattctctaggcatc 58831  T

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Target: scaffold0102 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 498
Target Start/End: Original strand, 25412 - 25504
Alignment:
Q  406 aaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagtcaaaaccctagattataatattgtact 498  Q
    |||||| ||||||||||| ||||||||||    ||||||||||| |||| ||||| || ||| |||| |||||||||||| |  |||||||||    
T  25412 aaacaaacccacaaagggttataaataccatcattaggatcattatcaaagcatctcataaacagtctaaaccctagattcttttattgtact 25504  T

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Target: scaffold0374 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 471
Target Start/End: Original strand, 12328 - 12393
Alignment:
Q  406 aaacaagcccacaaagggctataaatacccctcttaggatcattctcaaggcatcacaaaaatagt 471  Q
    ||||||| ||||||||| ||||||||||| |||||| || || ||||||| ||| || ||||||||    
T  12328 aaacaagtccacaaaggactataaatacctctcttaagaacactctcaagacatgactaaaatagt 12393  T

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Target: scaffold0056 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 19094 - 19143
Alignment:
Q  254 aagccctctagaaagacttaggcgccctccagaagggctcttgaggccta 303  Q
    |||||||||||||||  | || |||||||||||||||||| |||||||||    
T  19094 aagccctctagaaaggttcagacgccctccagaagggctcatgaggccta 19143  T

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