View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_41 (Length: 304)
Name: NF11977_low_41
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 48 - 290
Target Start/End: Complemental strand, 971443 - 971201
Alignment:
| Q |
48 |
tctggcgtggttggaattaagcttgatatggaaaaagcatatgatagagtggaatgggatttcctagaaagcactcttctcactatggactttcctatta |
147 |
Q |
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| T |
971443 |
tctggtgtggttggaattaagcttgatatggaaaaagcatatcatagagtggaatgggatttcctagaaagcactcttctcactatgggcttccctatta |
971344 |
T |
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| Q |
148 |
aaattgttaaaactataatgttgtgtgtcagaagtgtatctttttccattcttataaatgaatccccatctactatgtttaaacctaaaagggaaattag |
247 |
Q |
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| T |
971343 |
aaattgttaaaactataatgctgtgtgtcagaagtgtgtctttttccattcttataaatggatccccatctactatgtttaaacctaaaaggggaattag |
971244 |
T |
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| Q |
248 |
acaaggagatcctctgcccccttatcttttcataatctgtgct |
290 |
Q |
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| T |
971243 |
acaaggagatcctctctccccttatcttttcataatttgtgct |
971201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 57 - 262
Target Start/End: Complemental strand, 43136452 - 43136247
Alignment:
| Q |
57 |
gttggaattaagcttgatatggaaaaagcatatgatagagtggaatgggatttcctagaaagcactcttctcactatggactttcctattaaaattgtta |
156 |
Q |
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| T |
43136452 |
gttggaattaagcttgatctggaaaaggcatatgacagagtggagtgggattttttagaatcaactctcttcaccatgggttttcctattaatcttgtca |
43136353 |
T |
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| Q |
157 |
aaactataatgttgtgtgtcagaagtgtatctttttccattcttataaatgaatccccatctactatgtttaaacctaaaagggaaattagacaaggaga |
256 |
Q |
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| T |
43136352 |
atactatcgtgctttgtgtcagaagtgtctctttttctattctaattaatggatctcattctactacttttaaacctaagagaggaattagacaaggaga |
43136253 |
T |
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| Q |
257 |
tcctct |
262 |
Q |
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||||| |
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| T |
43136252 |
ccctct |
43136247 |
T |
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