View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_42 (Length: 304)
Name: NF11977_low_42
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 35497344 - 35497072
Alignment:
| Q |
18 |
gaaattaatccagttagcttctgttcgttttatggttgctatcatgaaaggcaaataacatatatgtcattctgtgatatattatttctattctcttatg |
117 |
Q |
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| T |
35497344 |
gaaattaatccagttagcttctgttcgttttatggttgctatcatgaaaggcaaataacatatatgtcattctgtgatatattatttctattctcttatg |
35497245 |
T |
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| Q |
118 |
ataaattggtggaaatttttgctcctggggatgacctaataacttgttaaattcactggaatgttctctggggttggttatagaaggatgaggtttatgt |
217 |
Q |
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| T |
35497244 |
ataaattggcggaaatttttgctcctagggatgacctaataacttgttaaattcactggaatgttctctggggttggttatagaaggatgaggtttatgt |
35497145 |
T |
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| Q |
218 |
taacatactgattacataacttgtttcccacaattttgcaccaattaaataaattctgatttcttttgttcat |
290 |
Q |
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| T |
35497144 |
taacatactgattacataacttgtttcccacaattttgcaccaattaaataaattctgatttcttttgttcat |
35497072 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 50095370 - 50095430
Alignment:
| Q |
119 |
taaattggtggaaatttttgctcctggggatgacctaataacttgttaaattcactggaat |
179 |
Q |
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| T |
50095370 |
taaattgatgcatatttatgctctttgggatgacctaatgacttgtgaaattcactggaat |
50095430 |
T |
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