View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_43 (Length: 303)
Name: NF11977_low_43
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 46451186 - 46450949
Alignment:
| Q |
13 |
gacatcatagattgataagatgaaacagccattgataacaagttcttaatgttacaacaacaaaagtgtgtttttgaggataggatagctttgtaaaaca |
112 |
Q |
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| T |
46451186 |
gacatgatagattgataagatgaaacagccattgataacaagttcttaatgttacaacaacaaa-gtgtgtttttgaggataggatagctttgtaaaaca |
46451088 |
T |
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| Q |
113 |
aaacacttagaactctttaacttcactacaccttagatttagatggttaaggttggtaggtatagcattgaagaaggttgtttatatagaatgaaatgga |
212 |
Q |
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| T |
46451087 |
aaacacttagaactgtttaacttcactacaccttagatttagatggttaaggttggtaggtatagcattgaagaaggttgtttatatagaatgaaatgga |
46450988 |
T |
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| Q |
213 |
aagcattgtgagggatattatggttccacgtagtgtgta |
251 |
Q |
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| T |
46450987 |
atgcattgtgagggatattatggttccacgtagtgtgta |
46450949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 46345482 - 46345722
Alignment:
| Q |
13 |
gacatcatagattgataagatgaaacagccattgataacaagttcttaatgttacaacaacaaaagtgtgtttttgaggataggatagctttgtaaaaca |
112 |
Q |
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| T |
46345482 |
gacatgatagattgataagatgaaacagccattgataacaagttcttaatgttacaacaacaaa-gtgtgtttttgaggataggatagctttgtaaaaca |
46345580 |
T |
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| Q |
113 |
aaacacttagaactctttaacttcactacaccttagatttagatggttaagg-ttggtaggtatagcattgaagaaggttgtttatatagaatgaaatgg |
211 |
Q |
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| T |
46345581 |
aaacacttagaactctttaacttcactgcaccttagatttagatggttaaggtttggtaggtataacattgaagaaggttgtttatatagaataaaatgg |
46345680 |
T |
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| Q |
212 |
aaagcattgtgagggatattatggttccacgtagtgtgtaac |
253 |
Q |
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| T |
46345681 |
aaagcattgtgaggggaattttggttccacgtagtttgtaac |
46345722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 151 - 288
Target Start/End: Complemental strand, 46465417 - 46465280
Alignment:
| Q |
151 |
ttagatggttaaggttggtaggtatagcattgaagaaggttgtttatatagaatgaaatggaaagcattgtgagggatattatggttccacgtagtgtgt |
250 |
Q |
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| T |
46465417 |
ttagatgattatggttgatatgtgtagcatttaaggtggttgtttatatagaataaaatggaaagcattgtgagggatattatggttccacgtagtgtgt |
46465318 |
T |
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| Q |
251 |
aactgggtcttaaagtttattggttcacgtgggttcat |
288 |
Q |
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| T |
46465317 |
aactgggtcttaaagttaattggttcacgtgggttcat |
46465280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 46461993 - 46461900
Alignment:
| Q |
159 |
ttaaggttggtaggtatagcattgaagaaggttgtttatatagaatgaaatggaaagcattgtgagggatattatggttccacgtagtgtgtaa |
252 |
Q |
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| T |
46461993 |
ttaagtttggtaggtatatcattgaagaaggttgtttatatagaataaaatggaaagcattgtgaggggcattatgcttccatgtagtgtgtaa |
46461900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 46470736 - 46470680
Alignment:
| Q |
13 |
gacatcatagattgataagatgaaacagccattgataacaagttcttaatgttacaa |
69 |
Q |
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| T |
46470736 |
gacatgatagattgataagatgaaacagccattgataacaagttcttaatgttacaa |
46470680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 46470608 - 46470538
Alignment:
| Q |
151 |
ttagatggttaaggttggtaggtatagcattgaagaaggttgtttatatagaa-tgaaatggaaagcattg |
220 |
Q |
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| T |
46470608 |
ttagatggttaaggttggtatgtatagcattgaagaaggttgtttatagagaattaaaatggaaagcattg |
46470538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 46450924 - 46450846
Alignment:
| Q |
210 |
ggaaagcattgtgagggatattatggttccacgtagtgtgtaactgggtcttaaagtttattggttcacgtgggttcat |
288 |
Q |
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| T |
46450924 |
ggaaagtattgtggtggatatttaagttccacgtaatgtgtaaatgggtcctaaaggtaattggttcacgtgggttcat |
46450846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 46465550 - 46465514
Alignment:
| Q |
13 |
gacatcatagattgataagatgaaacagccattgata |
49 |
Q |
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| T |
46465550 |
gacatgatagattgataagatgatacagccattgata |
46465514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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