View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_45 (Length: 297)
Name: NF11977_low_45
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 39179914 - 39179636
Alignment:
| Q |
18 |
cttttcaagctcactc--atacattgccttttatataatttttcaagactttagaattttccattgtcaagctcattgcattcaatttaaaatttcaatt |
115 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39179914 |
cttttcaagctcactctcatacattgcattttatataatttttcaagactttagaattttccattgtcaagctcattgcattcaatttaaaatttcaatt |
39179815 |
T |
|
| Q |
116 |
tgtgactaatacatgcatgcataattcgttgtatcatcatctttgctcgtgttctccccatctccacga----gtactctcttcctcaacgatcaatttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39179814 |
tgtgactaatacatgcatgcataattcgttgtatcatcatctttgctcgtgttctccccatctccacgatcccgtactctcttcctcaacgatcaatttt |
39179715 |
T |
|
| Q |
212 |
atcactcctccgtcatcaggcatctcaagcacaaaaaatcaacctcccctaatataactcttttggtatgcctttgctt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39179714 |
atcactcctccgtcatcaggcatctcaagcacaaaaaatcaacctcccctaatataactcttttggcatgcctttgctt |
39179636 |
T |
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