View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_low_5 (Length: 729)

Name: NF11977_low_5
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_low_5
NF11977_low_5
[»] chr3 (1 HSPs)
chr3 (6-713)||(54847660-54848396)


Alignment Details
Target: chr3 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 6 - 713
Target Start/End: Original strand, 54847660 - 54848396
Alignment:
Q  6 agaagcaaagggaggctcattgcatatatttttatt---catctgaaattagtagtctcttgaatgattgagagtaagtgtagacaaggatgcggtgata 102  Q
    |||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54847660 agaaacaaagggaggctcattgcatatatttttattattcatctgaaattagtagtctcttgaatgattgagagaaagtgtagacaaggatgcggtgata 54847759  T
Q  103 acatacaactcttttacc----------------atatttaattattgaatctaaatccaatccaatccaatcattttcttaagtaacggaatgtgcctc 186  Q
    ||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  54847760 acatacaactcttttacctataaacaccattcccatatttaattattgaatctaaatccaatccaatccaatcattttcttaagtaacg-aatgtgcctc 54847858  T
Q  187 tcataccataattttatatttagttgattcaccagcttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaacattttttaac 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  54847859 tcataccataattttatatttagttgattcaccagcttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaacattttt-aac 54847957  T
Q  287 aattgtattttataatttttctcttaagctgaacaaatggaacaagaaatcgaaaacatgatattcaacatgagttcacttggaacaagtttctcacaaa 386  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54847958 aattgtattttataatttttctcttaagctgaacaaatggaagaagaaatcgaaaacatgatattcaacatgagttcacttggaacaagtttctcacaaa 54848057  T
Q  387 agtaagagcatttaattgtttgtttaa------------ttaattttgcttgattaaattttgtgttatatgtatgagcaggagaggaggattatcaagg 474  Q
    |||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54848058 agtaagagcatttaattgtttgtttaattaattaattaattaattttgcttgattaaattttgtgttatatgtatgagcaggagaggaggattatcaagg 54848157  T
Q  475 tattactcagggaaagcaagatcatttgtttgtatggaagatgtacattcggttgaggatttgaagaaaccaaaacatcctgatgcaaagaaaagaaaga 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54848158 tattactcagggaaagcaagatcatttgtttgtatggaagatgtacattcggttgaggatttgaagaaaccaaaacatcctgatgcaaagaaaagaaaga 54848257  T
Q  575 aacattctcatagaaaggaattcatcaaccttaatccatatcattgtcgaagggcgccaagttgcactcaattaactacctcatacgtcaatgcttaaaa 674  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54848258 aacattctcataggaaggaattcatcaaccttaatccatatcattgtcgaagggcgccaagttgcactcaattaactacctcatacgtcaatgcttaaaa 54848357  T
Q  675 ttatttggatgttcacaagaatcagtacatgtttggatt 713  Q
    |||||||||||||||||||||||||||||||||||||||    
T  54848358 ttatttggatgttcacaagaatcagtacatgtttggatt 54848396  T

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