View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_53 (Length: 257)
Name: NF11977_low_53
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 55 - 246
Target Start/End: Original strand, 6967004 - 6967195
Alignment:
| Q |
55 |
attgtgtgtgtttttcttagaaaatggtgtgatgacttgtgactttgaaagaattaaatttattatgcttcctcgaaactacatatcttttcattgactc |
154 |
Q |
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| T |
6967004 |
attgtgtgtgtttttcttagaaaatggtgtgatgacttgtgactttgaaagaattaaatttattatgcttcctcgaaactacatatcttttcattgactc |
6967103 |
T |
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| Q |
155 |
gaatttttacgttgacttgatgaaacttccttgttcatgcttcttcgagcaaaaacgaagaagcttccttccattttcttgttaaacttcat |
246 |
Q |
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| T |
6967104 |
gaatttttacgttgacttgatgaaacttccttgttcatgcttcttcgagcaaaaacgaagaagcttccttccattttcttgttaaacttcat |
6967195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6966973 - 6967008
Alignment:
| Q |
1 |
tcccactttcaaattcaatgttgcaacatgaattgt |
36 |
Q |
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| T |
6966973 |
tcccactttcaaattcaatgtggcaacatgaattgt |
6967008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 4920824 - 4920701
Alignment:
| Q |
118 |
tatgcttcctcgaaactacatatctttt-cattgactcgaatttttacgttgacttgatgaaacttccttgttcatgcttcttcgagcaaaaacgaagaa |
216 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |
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| T |
4920824 |
tatgcttcctcgaaactacagatctttttcattgactcgaatttttacgttgacttgatgaaacttccctgttcatgcttattcgaacaaaaacgaagaa |
4920725 |
T |
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| Q |
217 |
gcttccttccattttcttgttaaa |
240 |
Q |
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| T |
4920724 |
ccttcctaccattttcttgttaaa |
4920701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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