View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_56 (Length: 251)
Name: NF11977_low_56
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_56 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 46 - 251
Target Start/End: Complemental strand, 48754142 - 48753937
Alignment:
| Q |
46 |
aatgatcattcaatcttacgttattgtagggtctccattgttagacaacaacctggcgccgcgttcaacattgcccaaggtcgcggccagtgcaacagtc |
145 |
Q |
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| T |
48754142 |
aatgatcattcaatcttacgttattgtagggtctccattgttagacaacaacctggcgccgcgttcaatattgcccgaggtcgcggccagtgcaacagtc |
48754043 |
T |
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| Q |
146 |
aggacagttacatttagtaacttcctcaagttcatcgagttcagccatgacagaagggtcatctatgttgtagttcgccggatagggaggatagacaggt |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
48754042 |
aggacagttacatttagtaacttcctcaagttcatcgagttcagccatgacagaagggtcatctatattgtagttggccggatagggaggatagacaggt |
48753943 |
T |
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| Q |
246 |
tgcctt |
251 |
Q |
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|||||| |
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| T |
48753942 |
tgcctt |
48753937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 48754430 - 48754392
Alignment:
| Q |
7 |
agcagagagaacaataaaacaatagaataaaggaaacat |
45 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
48754430 |
agcatagagaacaataaaacaatagaataaaggaaacat |
48754392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 46 - 251
Target Start/End: Original strand, 52091534 - 52091739
Alignment:
| Q |
46 |
aatgatcattcaatcttacgttattgtagggtctccattgttagacaacaacctggcgccgcgttcaacattgcccaaggtcgcggccagtgcaacagtc |
145 |
Q |
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| T |
52091534 |
aatgatcattcaatcttacgttattgtagggtctccattagtagacaacaacctggcgccgcgttcaatattgcccgaggtcgcggccagtgcaacagtc |
52091633 |
T |
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| Q |
146 |
aggacagttacatttagtaacttcctcaagttcatcgagttcagccatgacagaagggtcatctatgttgtagttcgccggatagggaggatagacaggt |
245 |
Q |
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| T |
52091634 |
aggacagttacatttagaaacttcctcaagttcatggaattcagccacgacagaagggtcatccatgttgtagttcgccagatagggaggatagatagga |
52091733 |
T |
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| Q |
246 |
tgcctt |
251 |
Q |
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|||||| |
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| T |
52091734 |
tgcctt |
52091739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 52091239 - 52091277
Alignment:
| Q |
7 |
agcagagagaacaataaaacaatagaataaaggaaacat |
45 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
52091239 |
agcatagagaacaataaaacaatagaataaaggaaacat |
52091277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 38462435 - 38462384
Alignment:
| Q |
46 |
aatgatcattcaatcttacgttattgtagggtctccattgttagacaacaac |
97 |
Q |
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|||||||||||| | |||| ||||| |||||||||| ||||||||||||||| |
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| T |
38462435 |
aatgatcattcagtgttaccttattatagggtctccgttgttagacaacaac |
38462384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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