View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_57 (Length: 250)
Name: NF11977_low_57
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_57 |
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| [»] chr2 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 85 - 250
Target Start/End: Complemental strand, 4789216 - 4789051
Alignment:
| Q |
85 |
ctatagagcaattaattttcaaagaatttcaaactagacaataaaagtgttatcttttgtttttaagtttcttactaaatgattttcctcaattaaaatc |
184 |
Q |
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| T |
4789216 |
ctatagagcaattaattttcaaagaatttcaaactaggcaataaaagtgttatcttttgtttttaagtttcttactaaatgtttttcctcgatcagagtc |
4789117 |
T |
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| Q |
185 |
cgagcaaaaactccactatgaatcaacgcttacaatggtgtaaaataacaaagcttaagactcatt |
250 |
Q |
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| T |
4789116 |
cgagcaaaaactccactatgaatcaacgtttacaatggtgtgaaatcacaaagcttaagactcatt |
4789051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 4792462 - 4792380
Alignment:
| Q |
1 |
tagctggtatcaccaaaacttccccagttgaggcttttgataaggaacagtaacagatgcaaccaaatatcatgtgactatag |
83 |
Q |
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| T |
4792462 |
tagctggtatcaccaaaactttcccagttgaggcttttgctacgggacagtaatagatgcaactaaatatcatgtgactatag |
4792380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 20724527 - 20724458
Alignment:
| Q |
181 |
aatccgagcaaaaactccactatgaatcaacgcttacaatggtgtaaaataacaaagcttaagactcatt |
250 |
Q |
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| T |
20724527 |
aatccgagcaaaaactccactacgaatcaatgcttacactggtgtgaaatcacaagacttgagactcatt |
20724458 |
T |
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