View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_6 (Length: 700)
Name: NF11977_low_6
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 574; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 28 - 683
Target Start/End: Complemental strand, 50910152 - 50909517
Alignment:
| Q |
28 |
agcacagacagcgaatatcttgtcgtctttcttgccctgaatttcatgcacagacagcgaatatcttgtcatctttctcgccctgaacttcgtaagggaa |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50910152 |
agcacagacagcgaatatcttgtcgtctttcttgccctgaatttcatgcacagacagcgaatatcttgtcatctttctcgccctgaacttcgtaagggaa |
50910053 |
T |
|
| Q |
128 |
aggaacctggaagaactggctcctgttccagcaacaattaagtattagccatcccaaagcagtaaagacgcgtctaatagattaatacttgttggaacac |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50910052 |
aggaacctggaagaactggctcctgttccagcaacaattaagtattagccatcccaaagcagtaaagacgcgtctaatagattaatacttgttggaacac |
50909953 |
T |
|
| Q |
228 |
tatgtttttctaactcttgttccaacaatactacatagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaa |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50909952 |
tatgtttttctaactcttgttccaacaatactacatagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaa |
50909853 |
T |
|
| Q |
328 |
attgtattagagtagccatattttcaaatttactcacactttagcaagaccttgcgtagcgtaggtgtacttttgtttatgtctcttttgaattgggttg |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50909852 |
attgtattagagtagccatattttcaaatttactcacactttagcaagagcttgcgtagcgtaggtgtacttttgtttatgtctcttttgaattgggttg |
50909753 |
T |
|
| Q |
428 |
ggtttaatcgtggatgtgtttagcctattttcaagttaaataaatctatgacacaacgacatgaaatttttcttccaccccttacatctcgtgcgccccc |
527 |
Q |
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|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50909752 |
gg----------------tttagcctattttcaagt----taaatctatgacacaacgacatgaaatttttcttccaccccttacatctcgtgcgtcccc |
50909673 |
T |
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| Q |
528 |
aaaattgatttataaatcaatcttaattcttacacatcttgattttggagtttgaaggtgccatatatatagttcaaacttctattgtgacaaagtgcaa |
627 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50909672 |
caaattgatttataaatcaatcttaattcttacacatcttgattttggagtttgaaggtgccatatatatagttcaaacttctattgtgacaaagtgcaa |
50909573 |
T |
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| Q |
628 |
attcataatttttaacatattcaaatttcaaaatctttgtgtaaaatacatttttt |
683 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50909572 |
attcataatttttaacatattcaaatttcaaaatctttgtgtaaaatacatttttt |
50909517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 50901143 - 50901041
Alignment:
| Q |
125 |
gaaaggaacctggaagaactggctcc-tgttccagcaacaattaagtattagccatcccaaagcagta---aagacgcgtctaatagattaatacttgtt |
220 |
Q |
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||||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| | |
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| T |
50901143 |
gaaagcaacctggaagaaccggctccctgttccaccaacaattaagtattagccatcccaaagcagtaaagaagacacatctaatagattaatacttggt |
50901044 |
T |
|
| Q |
221 |
gga |
223 |
Q |
| |
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||| |
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| T |
50901043 |
gga |
50901041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 263 - 365
Target Start/End: Complemental strand, 43548637 - 43548535
Alignment:
| Q |
263 |
tagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactc |
362 |
Q |
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||||||||||||||| | | |||||||||||||||| |||||| || ||||||||||||| | |||||||||||| || ||||||| |||||||||| |
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| T |
43548637 |
tagatagatgaagtcgacttcttacttgatcctctttatgaattgtttccatgcattattgtcagattgtattagaggagtaatattttgaaatttactc |
43548538 |
T |
|
| Q |
363 |
aca |
365 |
Q |
| |
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||| |
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| T |
43548537 |
aca |
43548535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 283 - 365
Target Start/End: Complemental strand, 29368852 - 29368771
Alignment:
| Q |
283 |
attacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactcaca |
365 |
Q |
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||||||| |||||||||||||| | |||||||| ||||||| ||||||||||| ||||||||| |||| ||||||||||||| |
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| T |
29368852 |
attacttcatcctctttttgaagtgttaccatgtattattgtgaaattgtattacagtagccat-ttttaaaatttactcaca |
29368771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 43548893 - 43548853
Alignment:
| Q |
75 |
gcacagacagcgaatatcttgtcatctttctcgccctgaac |
115 |
Q |
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| T |
43548893 |
gcacagacagcaattatcttgtcatctttctcgccctgaac |
43548853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 50901303 - 50901265
Alignment:
| Q |
75 |
gcacagacagcgaatatcttgtcatctttctcgccctga |
113 |
Q |
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||||||||||| | ||||||||||||||||||||||||| |
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| T |
50901303 |
gcacagacagcaattatcttgtcatctttctcgccctga |
50901265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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