View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_60 (Length: 242)
Name: NF11977_low_60
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 7699387 - 7699183
Alignment:
| Q |
23 |
aactctttcagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaa |
122 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7699387 |
aactcttttagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaa |
7699288 |
T |
|
| Q |
123 |
aggaggttgatttgtctaacaacaagttatccggcgctattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagttttaaccagct |
222 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7699287 |
aggaggttgatttgtctaacaacaagttatccggcactattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagctttaaccagct |
7699188 |
T |
|
| Q |
223 |
ctgtg |
227 |
Q |
| |
|
||||| |
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|
| T |
7699187 |
ctgtg |
7699183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 7713732 - 7713528
Alignment:
| Q |
23 |
aactctttcagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaa |
122 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
7713732 |
aactctttcagcaaactcaaaagactagaaaatctcgaccttggctccaacagccttagtgggccaatccctgaatttctgggcaagttgaagcgcctcc |
7713633 |
T |
|
| Q |
123 |
aggaggttgatttgtctaacaacaagttatccggcgctattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagttttaaccagct |
222 |
Q |
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| |||||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||| |||||||| ||||||||||| |
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| T |
7713632 |
aagaggttgatttgtccaacaacaagttatccggtgctattccggcgtcgctcgacaacctacagtctctttcgcagttcaatgttagctttaaccagct |
7713533 |
T |
|
| Q |
223 |
ctgtg |
227 |
Q |
| |
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||||| |
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| T |
7713532 |
ctgtg |
7713528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 7727249 - 7727053
Alignment:
| Q |
23 |
aactctttcagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaa |
122 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||| |||||| | ||||||||| |||||||| || || |
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| T |
7727249 |
aactctttcagcaaactcaaaagactacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttac |
7727150 |
T |
|
| Q |
123 |
aggaggttgatttgtctaacaacaagttatccggcgctattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagttttaacca |
219 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| | |||||| ||||| ||||| | ||| |||||||||||||||||||| || |||||||| |
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|
| T |
7727149 |
aggagtttgatttgtctaacaaccagttatccggtgttattcccgcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaacca |
7727053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 7731409 - 7731213
Alignment:
| Q |
23 |
aactctttcagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaa |
122 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||| |||||| | ||||||||| |||||||| || || |
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|
| T |
7731409 |
aactcttttagcaaactcaaaagactacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttac |
7731310 |
T |
|
| Q |
123 |
aggaggttgatttgtctaacaacaagttatccggcgctattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagttttaacca |
219 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| | |||||||||||| ||||| | ||| |||||||||||||||||||| || |||||||| |
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|
| T |
7731309 |
aggagtttgatttgtctaacaaccagttatccggtgttattccggcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaacca |
7731213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 7739567 - 7739371
Alignment:
| Q |
23 |
aactctttcagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| | |||||| | || |||||| |||||||| || || |
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| T |
7739567 |
aactctttcagcaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccagttgaagggcttac |
7739468 |
T |
|
| Q |
123 |
aggaggttgatttgtctaacaacaagttatccggcgctattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagttttaacca |
219 |
Q |
| |
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||||| |||||||||||||||| |||||| |||| | |||||||||||| ||||| ||||| |||||||| |||||||| || || |||||||| |
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| T |
7739467 |
aggagtttgatttgtctaacaataagttaaccggtgttattccggcgtcgttcggctccctaccgtctctttcccagtttaacgtcagctttaacca |
7739371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 219
Target Start/End: Original strand, 12908132 - 12908283
Alignment:
| Q |
68 |
tccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaaaggaggttgatttgtctaacaacaagttatccggcgctattccgg |
167 |
Q |
| |
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||||||| ||||||||| || |||||| |||| |||||| |||||||||| || | |||||||||||||||||||||||||||||||| | |||||| | |
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| T |
12908132 |
tccaacaaccttagtggcccgatccccaccttcctaggccggttgaagcgcttagaagaggttgatttgtctaacaacaagttatccggtgttattccag |
12908231 |
T |
|
| Q |
168 |
cgtcactcggcaacctacaatctctttcgcagtttaatgttagttttaacca |
219 |
Q |
| |
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|||| |||| || ||||| ||||| || ||||| |||||||| | |||||| |
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| T |
12908232 |
cgtcgctcgccaccctaccgtctctctcccagttgaatgttagctctaacca |
12908283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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