View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_low_62 (Length: 241)

Name: NF11977_low_62
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_low_62
NF11977_low_62
[»] chr3 (2 HSPs)
chr3 (24-241)||(48753640-48753854)
chr3 (51-111)||(48754562-48754622)
[»] chr4 (4 HSPs)
chr4 (154-241)||(52091818-52091903)
chr4 (51-115)||(52091903-52091967)
chr4 (24-54)||(52092029-52092059)
chr4 (51-111)||(52091007-52091067)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 48753640 - 48753854
Alignment:
Q  24 tatgtaataatttaattattctagatgtttgcatatttttgttacttatgatgtttttattggactcgattgcatatttttacctttccattctaatttg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48753640 tatgtaataatttaattattctagatgtttgcatatttttgttacttatgatgttcttattggactcgattgcatatttttacctttccattctaatttg 48753739  T
Q  124 ctacttagatagtattgctttacatacacatgcctcgtctttaaagggctctcatttaacctcaaatttgattggagacatgatttgttatggttctttt 223  Q
    |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48753740 ctacttaga---tattgctttacatacacatgcctcgtctttaaagggctctcatttaaccttaaatttgattggagacatgatttgttatggttctttt 48753836  T
Q  224 caaagttctaaggttgtt 241  Q
    ||||||||||||||||||    
T  48753837 caaagttctaaggttgtt 48753854  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 48754562 - 48754622
Alignment:
Q  51 tttgcatatttttgttacttatgatgtttttattggactcgattgcatatttttacctttc 111  Q
    |||||||||||||| || || ||||||| |||||| | |  ||||||||||||||||||||    
T  48754562 tttgcatatttttgctaattttgatgttcttattgaattatattgcatatttttacctttc 48754622  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 52091903 - 52091818
Alignment:
Q  154 tgcctcgtctttaaagggctctcatttaacctcaaatttgattggagacatgatttgttatggttcttttcaaagttctaaggttgtt 241  Q
    |||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52091903 tgcctcgtctttaaagggctc--atttaaccttaaatttgattggagacatgatttgttatggttcttttcaaagttctaagattgtt 52091818  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 52091967 - 52091903
Alignment:
Q  51 tttgcatatttttgttacttatgatgtttttattggactcgattgcatatttttacctttccatt 115  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52091967 tttgtatatttttgttgcttatgatgttcttattggactcgattgcatatttttacctttccatt 52091903  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 52092059 - 52092029
Alignment:
Q  24 tatgtaataatttaattattctagatgtttg 54  Q
    |||||||||||||||||||||||||||||||    
T  52092059 tatgtaataatttaattattctagatgtttg 52092029  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 52091067 - 52091007
Alignment:
Q  51 tttgcatatttttgttacttatgatgtttttattggactcgattgcatatttttacctttc 111  Q
    |||||||||||||| || || ||||||| |||||| | || |||| |||||||||||||||    
T  52091067 tttgcatatttttgctaattttgatgttcttattgaattctattgtatatttttacctttc 52091007  T

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