View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_65 (Length: 237)
Name: NF11977_low_65
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_65 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 43756075 - 43755850
Alignment:
| Q |
15 |
tcatgtacatatgctttttcagtttgagagatatctttgatggcttcttcagtcaatttagacacctcaaaatcttgacgccatctctaataaagtagaa |
114 |
Q |
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| T |
43756075 |
tcatgtacatatgctttttcagtttgagagatatctttgatggcttcttcagtcaattcagacacctcaaaatcttgacgccatctctattaaagtagaa |
43755976 |
T |
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| Q |
115 |
tgtaaagtaacaa---gtacataaaatttgcaaacatggagggtcttgtagcttaagtaggtgataactggaactggaaaaggtggaaaattttgaataa |
211 |
Q |
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| T |
43755975 |
tgtaaagtaacaacaagtacataaaatttgcaaacatggagggtcttgtagcttaagtaggtgataactggaactggaaaaggtggaaaattttgaataa |
43755876 |
T |
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| Q |
212 |
aatatcaatgccaacaacaataatat |
237 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43755875 |
aatatcaatgccaacaacaataatat |
43755850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 43760928 - 43760850
Alignment:
| Q |
59 |
ttcttcagtcaatttagacacctcaaaatcttgacgccatctctaataaagtagaatgtaaagtaacaagtacataaaa |
137 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||||||||| |
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| T |
43760928 |
ttcttcggtcaatttagacacctcaaaatcttgacgccatttctaataatgtagaagggaaagtaacaagtacataaaa |
43760850 |
T |
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