View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_low_66 (Length: 231)

Name: NF11977_low_66
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_low_66
NF11977_low_66
[»] chr4 (10 HSPs)
chr4 (1-231)||(53472528-53472757)
chr4 (14-184)||(53469652-53469823)
chr4 (11-142)||(27272572-27272705)
chr4 (45-184)||(32015122-32015262)
chr4 (1-153)||(10395953-10396106)
chr4 (5-156)||(50887389-50887540)
chr4 (98-184)||(29235206-29235291)
chr4 (99-184)||(9010892-9010977)
chr4 (5-137)||(21206356-21206491)
chr4 (14-182)||(13816904-13817073)
[»] chr2 (7 HSPs)
chr2 (14-184)||(8761171-8761343)
chr2 (53-184)||(37965518-37965651)
chr2 (63-184)||(10128460-10128582)
chr2 (1-131)||(25550091-25550221)
chr2 (1-59)||(37965265-37965323)
chr2 (142-184)||(15140727-15140769)
chr2 (95-172)||(15140779-15140856)
[»] chr3 (5 HSPs)
chr3 (5-184)||(30046377-30046558)
chr3 (5-156)||(25889611-25889763)
chr3 (68-184)||(31141363-31141480)
chr3 (117-154)||(25578999-25579036)
chr3 (28-139)||(37133784-37133896)
[»] chr7 (9 HSPs)
chr7 (10-153)||(7961767-7961911)
chr7 (5-156)||(11269944-11270096)
chr7 (96-172)||(1103129-1103205)
chr7 (1-172)||(1716615-1716787)
chr7 (10-92)||(36207996-36208078)
chr7 (122-184)||(1345068-1345129)
chr7 (134-183)||(1103078-1103127)
chr7 (14-58)||(11269802-11269846)
chr7 (20-74)||(11280342-11280396)
[»] chr1 (6 HSPs)
chr1 (25-153)||(22827037-22827166)
chr1 (25-153)||(22840959-22841088)
chr1 (13-184)||(24284782-24284954)
chr1 (14-94)||(20260944-20261024)
chr1 (45-184)||(24272707-24272846)
chr1 (25-109)||(22826642-22826727)
[»] chr6 (12 HSPs)
chr6 (14-184)||(14721668-14721838)
chr6 (25-153)||(13557985-13558114)
chr6 (1-143)||(16910083-16910225)
chr6 (12-153)||(2921839-2921981)
chr6 (10-154)||(27340600-27340743)
chr6 (10-154)||(27401340-27401483)
chr6 (5-129)||(13555994-13556119)
chr6 (14-156)||(11678827-11678966)
chr6 (25-150)||(2923168-2923295)
chr6 (26-132)||(11677133-11677240)
chr6 (48-173)||(22880002-22880128)
chr6 (48-173)||(22898117-22898243)
[»] chr5 (4 HSPs)
chr5 (21-156)||(19670657-19670793)
chr5 (28-156)||(32795543-32795672)
chr5 (43-137)||(26896586-26896681)
chr5 (80-156)||(32796359-32796436)
[»] chr8 (2 HSPs)
chr8 (47-171)||(33897182-33897307)
chr8 (25-106)||(42001905-42001987)
[»] scaffold0007 (1 HSPs)
scaffold0007 (127-184)||(260473-260530)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 53472528 - 53472757
Alignment:
Q  1 actataatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaactttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  53472528 actataatcgataattacagatactgaatagtagaggtaacgctagctatagcaaaacccactaaccattggtgcatgaaatactaacacacaaactttt 53472627  T
Q  101 atttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaatacttgggagtgtatt 200  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| |||||||||     
T  53472628 atttatatggc-aagtctttgcatatttcttcgtattatccgatgtggaacattttcccaacactaattcaaggcatatttcaatactttggagtgtata 53472726  T
Q  201 agacttggaagaaaccattcgaatttaagta 231  Q
    | |||||||||||||||||||||||||||||    
T  53472727 aaacttggaagaaaccattcgaatttaagta 53472757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 53469652 - 53469823
Alignment:
Q  14 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggca 112  Q
    ||||||||||||||||| || |||||||  | ||||||  |||| ||| |||| |||| | || |||||||||| |||||| ||||||||||||||| |     
T  53469652 attacagatactgaataatataggtaacattggctatagtaaaatccactaactattgattcaagaaatactaacacacaagacttttatttatatgacc 53469751  T
Q  113 aaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 184  Q
    || ||||||||||||||||| ||||||| ||||| | ||||||| |||||| ||||| ||| ||||||||||    
T  53469752 aagtctttgcatatttcttcatattatctgatgtagaacattttcccaacattaattaaaggcatatttcaa 53469823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 27272705 - 27272572
Alignment:
Q  11 ataattacagatactgaatagtagaggtaacgctagctataacaaaa-cccattaaccattggtgcatgaaatactaatacacaa-acttttatttatat 108  Q
    ||||||||| ||  ||||||||||| |||| |||||||||| ||||| |||| |||| ||||||||| |||||||||| |||||| ||||||||||||||    
T  27272705 ataattacaaattttgaatagtagaagtaatgctagctatagcaaaaacccactaactattggtgcaagaaatactaacacacaagacttttatttatat 27272606  T
Q  109 ggcaaaatctttgcatatttcttcgtattatccg 142  Q
    | | ||| |||||||||||||||| |||||||||    
T  27272605 gaccaaacctttgcatatttcttcatattatccg 27272572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 32015262 - 32015122
Alignment:
Q  45 agctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccga 143  Q
    ||||||| ||||||||| |||| ||||||||| |||||||||| ||||||| | ||||||||| | || || ||||||||||| ||||| ||||||   |    
T  32015262 agctatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctattatttta 32015163  T
Q  144 tgtgggacatttttccaacactaattcaagacatatttcaa 184  Q
    |||| ||| ||||| ||||||||||||||||||||||||||    
T  32015162 tgtgagacttttttacaacactaattcaagacatatttcaa 32015122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 10396106 - 10395953
Alignment:
Q  1 actataatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttt 99  Q
    ||||||||||||||| ||||||||||||||||||| | ||| | | ||||| || |||||| |||| |||| |||| |||||||||| ||||||  ||||    
T  10396106 actataatcgataatcacagatactgaatagtagaaggaacaccatctatagcataacccactaactattgatgcaagaaatactaacacacaaggcttt 10396007  T
Q  100 tatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacat 153  Q
    ||||||||||||  | ||||||||||||||||| | || || |||||| |||||    
T  10396006 tatttatatggccgagtctttgcatatttcttcatcttctctgatgtgagacat 10395953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 50887389 - 50887540
Alignment:
Q  5 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 103  Q
    |||| |||||||||| ||||| ||||||||||||||  ||||||||| ||||||||| |||| ||| ||| | | || || ||  ||||| || ||||||    
T  50887389 taattgataattacatatactaaatagtagaggtaatactagctatagcaaaacccactaactattagtgtaagcaaaaccaacgcacaagacatttatt 50887488  T
Q  104 tatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttt 156  Q
    |||||||| ||  |||||||||||| ||| |||||| ||||| ||||||||||    
T  50887489 tatatggccaagcctttgcatattt-ttcatattattcgatgcgggacatttt 50887540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 29235206 - 29235291
Alignment:
Q  98 tttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 184  Q
    |||||||||||||| || ||||||||||||| ||| ||| ||||||||||||| ||||| |||||| |||||||||  |||||||||    
T  29235206 tttatttatatggccaagtctttgcatattttttcatataatccgatgtgggatattttcccaaca-taattcaaggaatatttcaa 29235291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 9010892 - 9010977
Alignment:
Q  99 ttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 184  Q
    ||||||||||||| || || | |||||||||||| ||| |||||||||||||||| || | ||||||||||| || ||||||||||    
T  9010892 ttatttatatggccaagtcatagcatatttcttcatatcatccgatgtgggacatattcctaacactaattccaggcatatttcaa 9010977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 21206491 - 21206356
Alignment:
Q  5 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaa-cccattaaccattggtgca-tgaaatactaatacacaaa-ctttta 101  Q
    |||| |||||||||| ||  |||||| |||| |||| |||| ||||||||||| |||| |||| ||||||| | | |||||||||||||||   ||||||    
T  21206491 taattgataattacaaattttgaataatagaagtaatgctaactataacaaaaacccactaactattggtgtaataaaatactaatacacatggctttta 21206392  T
Q  102 tttatatggcaaaatctttgcatatttcttcgtatt 137  Q
    |||||||| | ||  ||||| |||||||||||||||    
T  21206391 tttatatgaccaagcctttgtatatttcttcgtatt 21206356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 13817073 - 13816904
Alignment:
Q  14 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaact-tttatttatatggca 112  Q
    |||||| ||||||||||| || || ||  ||||||||  |||||| || |||| ||| || || |||||| ||| ||| ||  | |||||||||||| |     
T  13817073 attacaaatactgaatagcagtggcaatactagctatcgcaaaactcactaactatttgtacaagaaataataacacataaggtctttatttatatgacc 13816974  T
Q  113 aaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttc 182  Q
    || |||| |||||||||||| |||| | ||||||| ||| |||| |||||| ||||||||  ||||||||    
T  13816973 aagtcttcgcatatttcttcatattcttcgatgtgagactttttcccaacattaattcaatgcatatttc 13816904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 8761171 - 8761343
Alignment:
Q  14 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatg-gc 111  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||| |||| ||||||||| |||||||||| |||||| |||||||||||||||  |    
T  8761171 attacagatactgaatagtagagataatgctagctataacaaaatccactaacaattggtgcaagaaatactaacacacaagacttttatttatatgacc 8761270  T
Q  112 aaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 184  Q
    ||| | ||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||    
T  8761271 aaagtatttgcatatttcttcatattatctgatgtgggacattttcccaacacaaattcaagacatatttcaa 8761343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 37965518 - 37965651
Alignment:
Q  53 caaaacccattaaccattggtgcatgaaatactaatacacaaa--cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtggga 150  Q
    |||||||||||||| ||||||||| |||||||||| |||||||  |||||||||||||  | || ||||||||||||||||| |||||||||||||| ||    
T  37965518 caaaacccattaactattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattatccgatgtgaga 37965617  T
Q  151 catttttccaacactaattcaagacatatttcaa 184  Q
    |||||| |||||||||||||||| ||||||||||    
T  37965618 cattttcccaacactaattcaaggcatatttcaa 37965651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 63 - 184
Target Start/End: Complemental strand, 10128582 - 10128460
Alignment:
Q  63 taaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaa 161  Q
    |||| ||||||||| |||||||||| |||||| ||||||||||||||| | || ||||| ||||||||||| |||| |||||||||| | ||||||||||    
T  10128582 taactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtggaatatttttccaa 10128483  T
Q  162 cactaattcaagacatatttcaa 184  Q
    |||||||||| ||||||||||||    
T  10128482 cactaattcaggacatatttcaa 10128460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 25550221 - 25550091
Alignment:
Q  1 actataatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttt 99  Q
    ||||||||||||||||||||||||||||||||| ||||||| | |||||||  |||| ||| |||| ||| || || |||||||| | |||||| |||||    
T  25550221 actataatcgataattacagatactgaatagtaaaggtaactccagctataggaaaatccactaactattagtccaagaaatact-acacacaagacttt 25550123  T
Q  100 tatttatatggcaaaatctttgcatatttctt 131  Q
    |||||||||||| |||||||| ||||||||||    
T  25550122 tatttatatggccaaatctttacatatttctt 25550091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37965265 - 37965323
Alignment:
Q  1 actataatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacc 59  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||    
T  37965265 actataatcgataattacagatactgaatagtagaggtaacgttacctatagcaaaacc 37965323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 15140769 - 15140727
Alignment:
Q  142 gatgtgggacatttttccaacactaattcaagacatatttcaa 184  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15140769 gatgtgggacatttttccaacactaattcaagacatatttcaa 15140727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 15140856 - 15140779
Alignment:
Q  95 acttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaa 172  Q
    ||||||||||||||| | |||||||| ||||||||||| | ||| ||||||||||||||  | |||||||||||||||    
T  15140856 acttttatttatatgaccaaatctttacatatttcttcattttaaccgatgtgggacataatcccaacactaattcaa 15140779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 30046558 - 30046377
Alignment:
Q  5 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatt 103  Q
    |||||||||||| || ||| ||||||||||||||||||||||||||| ||||||| | |||| ||| || || |||||||||| ||||||| ||||||||    
T  30046558 taatcgataattgcatatattgaatagtagaggtaacgctagctatagcaaaaccgactaactatt-gtacaagaaatactaacacacaaagcttttatt 30046460  T
Q  104 tatatggcaaaatctttgcata--tttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 184  Q
    |||||||  || ||||||||||  ||| ||| ||||||||||| || |||||||| |||||| ||||||||| ||||||||||    
T  30046459 tatatggtcaagtctttgcatattttttttcatattatccgatatgagacattttcccaacattaattcaaggcatatttcaa 30046377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 25889763 - 25889611
Alignment:
Q  5 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 103  Q
    |||| |||||||||| | ||| |||| ||||||||  |||||||||| ||||||||| |||| ||||||||| |||||||||| | |||| |||||||||    
T  25889763 taattgataattacaaagactaaataatagaggtactgctagctatagcaaaacccactaactattggtgcaagaaatactaacatacaagacttttatt 25889664  T
Q  104 tatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttt 156  Q
    |||||| | ||| |||||||||  ||||| | |||||||||||||||||||||    
T  25889663 tatatgaccaaacctttgcataactcttcatgttatccgatgtgggacatttt 25889611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 31141480 - 31141363
Alignment:
Q  68 attggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacacta 166  Q
    ||||||| | |||||||||| || ||| ||||||||||||||||| |||||||||||||||||||| |||| || |||||| ||| |||||| |||| ||    
T  31141480 attggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctattctctgatgtgagacttttttctaacaata 31141381  T
Q  167 attcaagacatatttcaa 184  Q
     || |||  |||||||||    
T  31141380 ttttaagttatatttcaa 31141363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 25578999 - 25579036
Alignment:
Q  117 ctttgcatatttcttcgtattatccgatgtgggacatt 154  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  25578999 ctttgcatatttcttcatattatccgatgtgagacatt 25579036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 37133784 - 37133896
Alignment:
Q  28 atagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatat 126  Q
    ||||||||| ||||  ||| |||| |||||  || |||| |||| || | ||||||||||||||||| ||||||||| ||| ||| ||||||| | ||||    
T  37133784 atagtagagttaacattagttatagcaaaattcactaactattgatgtaagaaatactaatacacaagacttttattcatacggctaaatcttcgtatat 37133883  T
Q  127 ttcttcgtattat 139  Q
    || ||| ||||||    
T  37133884 tttttcatattat 37133896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 7961911 - 7961767
Alignment:
Q  10 gataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatat 108  Q
    |||||||||| ||  ||||||||||| |||| |||||||||| ||||||||| |||| ||||||||| |||||||||| ||||||  |||||||||||||    
T  7961911 gataattacaaattttgaatagtagaagtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatat 7961812  T
Q  109 ggcaaaatctttgcatatttcttcgtattatccgatgtgggacat 153  Q
    | | ||| |||||||||||||||| |||||| |||||||||||||    
T  7961811 gaccaaacctttgcatatttcttcatattatgcgatgtgggacat 7961767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 11270096 - 11269944
Alignment:
Q  5 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 103  Q
    |||| |||||||||| ||||||||||||||||||||| |||| |||| ||||||||| |||| |||||||||   |||||||| ||||||  ||||||||    
T  11270096 taattgataattacaaatactgaatagtagaggtaacactagttatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatt 11269997  T
Q  104 tatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttt 156  Q
    |||||| | |||  |||  |||||||||| |||||||||||||||||||||||    
T  11269996 tatatgaccaaacttttttatatttcttcatattatccgatgtgggacatttt 11269944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 1103205 - 1103129
Alignment:
Q  96 cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaa 172  Q
    |||||||||||||||| || ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  1103205 cttttatttatatggccaagtctttacatatttcttcatattatccgatgtgggacgtttttccaacactaattcaa 1103129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 1716615 - 1716787
Alignment:
Q  1 actataatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttt 99  Q
    |||||||||||| || | | ||||||||||||||||||||  | |||||||| ||||| || |||| |||| |||| |||||| ||| |||||| || ||    
T  1716615 actataatcgattatcatatatactgaatagtagaggtaataccagctataaaaaaactcactaactattgatgcaagaaatattaacacacaagacctt 1716714  T
Q  100 tatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaa 172  Q
    |||||||||||  || ||||| ||||||| ||| |||| | ||||||| ||  |||||||||||||| |||||    
T  1716715 tatttatatggtcaagtctttacatattttttcatattcttcgatgtgagaattttttccaacactatttcaa 1716787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 36208078 - 36207996
Alignment:
Q  10 gataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacac 92  Q
    |||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||| |||||||||| ||||    
T  36208078 gataattagagatactaaatagtagagctaacgctagctatagcaaaacccactaactattggtgcaagaaatactaacacac 36207996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 1345129 - 1345068
Alignment:
Q  122 catatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 184  Q
    ||||||||||| |||| | ||||||| ||| |||||| |||||||||||||||||||||||||    
T  1345129 catatttcttcttattcttcgatgtgagac-tttttctaacactaattcaagacatatttcaa 1345068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 1103127 - 1103078
Alignment:
Q  134 tattatccgatgtgggacatttttccaacactaattcaagacatatttca 183  Q
    ||||||| |||||| |||||||| |||||||||||||||| |||||||||    
T  1103127 tattatcagatgtgagacattttcccaacactaattcaaggcatatttca 1103078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 11269802 - 11269846
Alignment:
Q  14 attacagatactgaatagtagaggtaacgctagctataacaaaac 58  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||    
T  11269802 attacagatactaactagtagaggtaacgctagctatagcaaaac 11269846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 11280396 - 11280342
Alignment:
Q  20 gatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtg 74  Q
    |||||||  ||||||||||||||||||||||| ||||||| | |||| |||||||    
T  11280396 gatactgtctagtagaggtaacgctagctatagcaaaacctactaactattggtg 11280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 22827037 - 22827166
Alignment:
Q  25 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgca 123  Q
    ||||||||||| |||| |||||||||||||||||||| |||| ||||||||| ||||||  || ||||||  |||||||||||||| | ||| |||||||    
T  22827037 tgaatagtagaagtaatgctagctataacaaaacccactaactattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgca 22827136  T
Q  124 tatttcttcgtattatccgatgtgggacat 153  Q
    ||||||||| ||||||||||||||||||||    
T  22827137 tatttcttcatattatccgatgtgggacat 22827166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 22841088 - 22840959
Alignment:
Q  25 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgca 123  Q
    ||||||||||| |||| ||||||||||  |||||||| |||| ||||||||| |||||||||| ||||||  ||||||||| |||| | ||  |||||||    
T  22841088 tgaatagtagaagtaatgctagctatagtaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgca 22840989  T
Q  124 tatttcttcgtattatccgatgtgggacat 153  Q
    ||||||||| ||||||||||||||||||||    
T  22840988 tatttcttcatattatccgatgtgggacat 22840959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 24284954 - 24284782
Alignment:
Q  13 aattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggc 111  Q
    ||||||||||||| |||||||||| |||  | |||||||  || | ||| | || ||||||||| |||||| ||| ||||||  | ||||||||||| ||    
T  24284954 aattacagatactaaatagtagagctaataccagctatagtaacatccactgactattggtgcaagaaatattaacacacaatgcctttatttatatagc 24284855  T
Q  112 aaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 184  Q
     |||| ||||||||||| ||| |||| || |||||||||| |||| |||| | ||||||||| ||||||||||    
T  24284854 caaatatttgcatatttgttcatattctctgatgtgggactttttcccaatattaattcaaggcatatttcaa 24284782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 20260944 - 20261024
Alignment:
Q  14 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa 94  Q
    |||||| |||||||||||||||||||||||||| |||| |||||  ||||| | |||| |||| |||||||||||||||||    
T  20260944 attacatatactgaatagtagaggtaacgctagttatagcaaaattcattagctattgatgcaagaaatactaatacacaa 20261024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 24272846 - 24272707
Alignment:
Q  45 agctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccga 143  Q
    |||||||  ||||| || |||| ||||||||| |||||||||| ||||||  | ||||| ||||| |  || ||||||||||||||||| || | | |||    
T  24272846 agctatagtaaaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcatactctacga 24272747  T
Q  144 tgtgggacatttttccaacactaattcaagacatatttcaa 184  Q
    |||| ||  ||||||||||||||||||||||||||||||||    
T  24272746 tgtgagat-tttttccaacactaattcaagacatatttcaa 24272707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 22826642 - 22826727
Alignment:
Q  25 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatg 109  Q
    ||||||||||| |||| |||||||||| ||||| ||| |||| ||||||||| |||||||||| ||| ||  ||||||||||||||    
T  22826642 tgaatagtagaagtaatgctagctatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatg 22826727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 14721838 - 14721668
Alignment:
Q  14 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggca 112  Q
    ||||||||||| |||||||| ||||||    || ||||||||||||||||||| |||| |||| |||||||| ||| ||||  |||||||||||| |||     
T  14721838 attacagataccgaatagtataggtaatatcagatataacaaaacccattaactattgctgcaagaaatacttataaacaaggcttttatttata-ggcc 14721740  T
Q  113 aaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 184  Q
    |||||||||||||||||||  |||| |||||||||||||||||| |||||| ||||||| | ||||| ||||    
T  14721739 aaatctttgcatatttctttctattctccgatgtgggacattttcccaacattaattcatggcatatgtcaa 14721668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 13557985 - 13558114
Alignment:
Q  25 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgca 123  Q
    ||||||||||| |||| |||||| ||| ||||| ||| |||| |||||||||||||||||||| ||||||  |||||||||||||| | ||  |||||||    
T  13557985 tgaatagtagaagtaatgctagcaatagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttgca 13558084  T
Q  124 tatttcttcgtattatccgatgtgggacat 153  Q
    ||||||||| ||||||||||||||||||||    
T  13558085 tatttcttcatattatccgatgtgggacat 13558114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 16910083 - 16910225
Alignment:
Q  1 actataatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttt 99  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||| |||||| ||  ||| ||||| |||  ||||||||| |||||| |||||    
T  16910083 actataatcgataattacagatactgaatagtaaatgt-acgctagctatagcaaaacacacaaactattggcgcaacaaatactaacacacaatacttt 16910181  T
Q  100 tatttatatggcaaaatctttgcatatttcttcgtattatccga 143  Q
    ||||||||  || || |||||||||||| |||| ||||||||||    
T  16910182 tatttataatgccaagtctttgcatattccttcatattatccga 16910225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 2921839 - 2921981
Alignment:
Q  12 taattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatgg 110  Q
    |||||||| ||  |||||| |||| |||| |||||||||| ||||||||| |||| ||||||||| |||||||||| ||| || ||||||||||||||      
T  2921839 taattacaaattttgaatattagacgtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatatta 2921938  T
Q  111 caaaatctttgcatatttcttcgtattatccgatgtgggacat 153  Q
    | || || |||||||||||||| |||||||||||||| |||||    
T  2921939 ccaagtcattgcatatttcttcatattatccgatgtgagacat 2921981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 27340600 - 27340743
Alignment:
Q  10 gataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaacttttatttatatg 109  Q
    |||||||||| ||  ||||||||||| |||| ||||| |||| ||||||||| |||| |||||| || || ||||||| |||||   |||||||||||||    
T  27340600 gataattacaaattttgaatagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt-ttttatttatatg 27340698  T
Q  110 gcaaaatctttgcatatttcttcgtattatccgatgtgggacatt 154  Q
     | ||  |||||||||||||||| |||||||||||||||||||||    
T  27340699 accaagcctttgcatatttcttcatattatccgatgtgggacatt 27340743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 27401340 - 27401483
Alignment:
Q  10 gataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaacttttatttatatg 109  Q
    |||||||||| ||  ||||||||||| |||| ||||| |||| ||||||||| |||| |||||| || || ||||||| |||||   |||||||||||||    
T  27401340 gataattacaaattttgaatagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt-ttttatttatatg 27401438  T
Q  110 gcaaaatctttgcatatttcttcgtattatccgatgtgggacatt 154  Q
     | ||  |||||||||||||||| |||||||||||||||||||||    
T  27401439 accaagcctttgcatatttcttcatattatccgatgtgggacatt 27401483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 13555994 - 13556119
Alignment:
Q  5 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 103  Q
    |||| |||||||||| ||  ||||||||||| |||| |||||||||| ||||||||| |||| ||||||||| |||||||||| ||||||  ||||||||    
T  13555994 taattgataattacaaattttgaatagtagaagtaatgctagctatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatt 13556093  T
Q  104 tatatggcaaaatctttgcatatttc 129  Q
    |||||| | ||  |||||||||||||    
T  13556094 tatatgaccaagcctttgcatatttc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 11678966 - 11678827
Alignment:
Q  14 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggca 112  Q
    |||||| |||||||||||||||||||| |||| ||||| ||||| ||| ||    ||||||   |||||||||| |||||| | ||||||||| ||| |     
T  11678966 attacaaatactgaatagtagaggtaatgctaactatagcaaaatccacta----ttggtgttagaaatactaacacacaagagttttatttacatgacc 11678871  T
Q  113 aaatctttgcatatttcttcgtattatccgatgtgggacatttt 156  Q
    ||  |||||||||||||||| |||||||||||||||||||||||    
T  11678870 aagcctttgcatatttcttcatattatccgatgtgggacatttt 11678827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 2923168 - 2923295
Alignment:
Q  25 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatcttt-gc 122  Q
    ||||||||||| ||||   |||||||||||| ||||| |||| ||| ||||| ||| |||||| |||||| ||||||||||||||| | ||  |||| ||    
T  2923168 tgaatagtagaagtaatattagctataacaagacccactaactattagtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttgc 2923267  T
Q  123 atatttcttcgtattatccgatgtggga 150  Q
    |||||||||| |||||||||||||||||    
T  2923268 atatttcttcatattatccgatgtggga 2923295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 11677240 - 11677133
Alignment:
Q  26 gaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcat 124  Q
    ||||||||||||||| ||||||||||  |||||||  |||| |||||||   |||||||||| |||||| | |||||||||||||   ||  ||||||||    
T  11677240 gaatagtagaggtaatgctagctataggaaaacccgctaactattggtgttagaaatactaacacacaagagttttatttatatgatcaatcctttgcat 11677141  T
Q  125 atttcttc 132  Q
    ||||||||    
T  11677140 atttcttc 11677133  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 22880002 - 22880128
Alignment:
Q  48 tataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgt 146  Q
    |||| ||||||||| |||  ||||||||| |||||| ||| ||||||| | |||||||||||| | || | |||  |||||||||  |||| || | |||    
T  22880002 tatagcaaaacccactaattattggtgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgt 22880101  T
Q  147 gggacatttttccaacactaattcaag 173  Q
    | ||| |||||||||||||||||||||    
T  22880102 gtgacttttttccaacactaattcaag 22880128  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 22898117 - 22898243
Alignment:
Q  48 tataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgt 146  Q
    |||| ||||||||| |||  ||||||||| |||||| ||| ||| ||| | |||||||||||| | || | |||  |||||||||  |||| || | |||    
T  22898117 tatagcaaaacccactaattattggtgcaagaaatattaacacaaaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgt 22898216  T
Q  147 gggacatttttccaacactaattcaag 173  Q
    | ||| |||||||||||||||||||||    
T  22898217 gtgacttttttccaacactaattcaag 22898243  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 19670793 - 19670657
Alignment:
Q  21 atactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctt 119  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| |||||| || | |||||||| ||||||  |||||||||||||| | ||  |||    
T  19670793 atactgaatagtagaggtaacgctagctatagcaaaacccactaactattggtacaagtaatactaacacacaaggcttttatttatatgactaagcctt 19670694  T
Q  120 tgcatatttcttcgtattatccgatgtgggacatttt 156  Q
    ||||||||||||| |||||||  ||||| ||||||||    
T  19670693 tgcatatttcttcatattatcttatgtgagacatttt 19670657  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 32795543 - 32795672
Alignment:
Q  28 atagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatat 126  Q
    ||||||||||||||| ||| |||| ||||||||| |||| |||||| || | |||||| | || ||| ||||||||| ||||| | || |||||||||||    
T  32795543 atagtagaggtaacgttagttatagcaaaacccactaactattggtacaagtaatactgacacgcaagacttttattaatatgactaagtctttgcatat 32795642  T
Q  127 ttcttcgtattatccgatgtgggacatttt 156  Q
    |||||| |||||||||||||||||||||||    
T  32795643 ttcttcatattatccgatgtgggacatttt 32795672  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 26896681 - 26896586
Alignment:
Q  43 ctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaact-tttatttatatggcaaaatctttgcatatttcttcgtatt 137  Q
    ||||||||| |||||| ||||||| |||  |||| |||||||||| ||||||  | |||||||||||||| || ||||||||||||||||| ||||    
T  26896681 ctagctatagcaaaacacattaactattaatgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctatt 26896586  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 32796359 - 32796436
Alignment:
Q  80 aatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttt 156  Q
    |||||||| ||||||  |||||||||||||| | ||  |||||||||||||||| ||||||||||| |||||||||||    
T  32796359 aatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatccgatctgggacatttt 32796436  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 33897307 - 33897182
Alignment:
Q  47 ctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatatttcttcgtattatccgatg 145  Q
    ||||||||||||| | |||  ||||||| |  ||||||||| |||||| |||||||||||||| |  |||||||| ||||||||||| ||||||  |||     
T  33897307 ctataacaaaacctactaattattggtgtaaaaaatactaacacacaagacttttatttatattgtcaaatctttacatatttcttcctattatatgata 33897208  T
Q  146 tgggacatttttccaacactaattca 171  Q
    | ||||||||| ||||||||||||||    
T  33897207 ttggacattttcccaacactaattca 33897182  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 42001987 - 42001905
Alignment:
Q  25 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttat 106  Q
    ||||||||||| |||| |||| ||||| ||||||| | |||| ||||||||| | | |||||| |||||| ||||||||||||    
T  42001987 tgaatagtagaagtaatgctacctatagcaaaacctactaactattggtgcaagtattactaacacacaagacttttatttat 42001905  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 260473 - 260530
Alignment:
Q  127 ttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 184  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||| |||||||||||    
T  260473 ttcttcgtattaccctatgtaggacattttcccaacactaattcaaaacatatttcaa 260530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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