View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_low_67 (Length: 231)

Name: NF11977_low_67
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_low_67
NF11977_low_67
[»] chr3 (7 HSPs)
chr3 (1-221)||(771956-772176)
chr3 (1-221)||(2455247-2455467)
chr3 (171-221)||(12217595-12217645)
chr3 (175-217)||(13497787-13497829)
chr3 (163-220)||(37753779-37753836)
chr3 (173-221)||(9595051-9595099)
chr3 (175-221)||(2474701-2474747)
[»] scaffold1004 (1 HSPs)
scaffold1004 (171-221)||(1723-1773)
[»] scaffold0760 (1 HSPs)
scaffold0760 (171-221)||(4218-4268)
[»] scaffold0044 (1 HSPs)
scaffold0044 (175-221)||(88706-88752)
[»] chr1 (1 HSPs)
chr1 (175-220)||(51858166-51858211)
[»] chr5 (4 HSPs)
chr5 (173-221)||(20292556-20292604)
chr5 (173-221)||(20301004-20301052)
chr5 (173-221)||(20305417-20305465)
chr5 (173-221)||(20309821-20309869)
[»] chr6 (4 HSPs)
chr6 (178-221)||(4183455-4183498)
chr6 (178-221)||(4744296-4744339)
chr6 (170-221)||(9820340-9820391)
chr6 (170-221)||(9826002-9826053)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 772176 - 771956
Alignment:
Q  1 acaacttaggtaagttatttctctatgattctccaatccaatctattttttcaacttctagggtaaagcagacacaactcaattatccaaacagactaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  772176 acaacttaggtaagttatttctctatgattctccaatccaatctattttttcaacttctagggtaaagcagacacaactcaattatccaaacagactaat 772077  T
Q  101 gaatggtcactcttgcgcatactcatgcgacggtatcgtgtgtatcggtaagaccaactttaatagttgcgctgttttgtggaacccttccattcaaaaa 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  772076 gaatagtcactcttgcgcatactcatgcgacggtatcgtgtgtatcgctaagaccaactttaatagttgtgctgttttgtggaacccttccattcaaaaa 771977  T
Q  201 ttcaagatattgcctcctttg 221  Q
    |||||||||||||||||||||    
T  771976 ttcaagatattgcctcctttg 771956  T

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Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2455247 - 2455467
Alignment:
Q  1 acaacttaggtaagttatttctctatgattctccaatccaatctattttttcaacttctagggtaaagcagacacaactcaattatccaaacagactaat 100  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||     
T  2455247 acaacttaggtaagttatttctatatgattcaccaatccaatctattttttcaacttctagggtaaagcagacacaactcaattatccaaacgggctaaa 2455346  T
Q  101 gaatggtcactcttgcgcatactcatgcgacggtatcgtgtgtatcggtaagaccaactttaatagttgcgctgttttgtggaacccttccattcaaaaa 200  Q
    ||||  ||||| |||||||||||| |||||||||||| |||||||| |||| ||||||| | ||||||| ||||||||||||||||||||||||  | ||    
T  2455347 gaataatcacttttgcgcatactcttgcgacggtatcttgtgtatcagtaataccaactattatagttgtgctgttttgtggaacccttccattggagaa 2455446  T
Q  201 ttcaagatattgcctcctttg 221  Q
    |||||||||||||||||||||    
T  2455447 ttcaagatattgcctcctttg 2455467  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 12217595 - 12217645
Alignment:
Q  171 gctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| |||||    
T  12217595 gctgttttgtggaacccttccattcgaatgttcaagatattgcctactttg 12217645  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 13497787 - 13497829
Alignment:
Q  175 ttttgtggaacccttccattcaaaaattcaagatattgcctcc 217  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  13497787 ttttgtggaacccttccattagaaaattcaagatattgcctcc 13497829  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 37753836 - 37753779
Alignment:
Q  163 atagttgcgctgttttgtggaacccttccattcaaaaattcaagatattgcctccttt 220  Q
    |||||| |||||||||||||||||||| |||| | |||||||| | ||||||||||||    
T  37753836 atagttccgctgttttgtggaaccctttcattaataaattcaaaacattgcctccttt 37753779  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 9595099 - 9595051
Alignment:
Q  173 tgttttgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    ||||||||||||||||||||||  |||||| ||| ||||||||||||||    
T  9595099 tgttttgtggaacccttccattagaaaatttaagttattgcctcctttg 9595051  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 2474701 - 2474747
Alignment:
Q  175 ttttgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    ||||||||||||||||||||  |||||| ||| ||||||||||||||    
T  2474701 ttttgtggaacccttccattggaaaatttaagttattgcctcctttg 2474747  T

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Target: scaffold1004 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 1723 - 1773
Alignment:
Q  171 gctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    ||||||||||||||||||||||||  || ||||||||| ||||||||||||    
T  1723 gctgttttgtggaacccttccattagaacattcaagattttgcctcctttg 1773  T

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Target: scaffold0760 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 4218 - 4268
Alignment:
Q  171 gctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    ||||||||||||||||||||||||  || ||||||||| ||||||||||||    
T  4218 gctgttttgtggaacccttccattagaacattcaagattttgcctcctttg 4268  T

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Target: scaffold0044 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 88706 - 88752
Alignment:
Q  175 ttttgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    ||||||||||||||||||| | |||||||||| ||||||||||||||    
T  88706 ttttgtggaacccttccatccgaaaattcaaggtattgcctcctttg 88752  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 51858166 - 51858211
Alignment:
Q  175 ttttgtggaacccttccattcaaaaattcaagatattgcctccttt 220  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||    
T  51858166 ttttgtgtaacccttccattagaaaattcaagatattgcctccttt 51858211  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 20292556 - 20292604
Alignment:
Q  173 tgttttgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    ||||||||||||||||||||||  ||||||||||| | |||||||||||    
T  20292556 tgttttgtggaacccttccattagaaaattcaagagagtgcctcctttg 20292604  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 20301004 - 20301052
Alignment:
Q  173 tgttttgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    ||||||||||||||||||||||  ||||||||||| | |||||||||||    
T  20301004 tgttttgtggaacccttccattagaaaattcaagagagtgcctcctttg 20301052  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 20305417 - 20305465
Alignment:
Q  173 tgttttgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    ||||||||||||||||||||||  ||||||||||| | |||||||||||    
T  20305417 tgttttgtggaacccttccattagaaaattcaagagagtgcctcctttg 20305465  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 20309821 - 20309869
Alignment:
Q  173 tgttttgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    ||||||||||||||||||||||  ||||||||||| | |||||||||||    
T  20309821 tgttttgtggaacccttccattagaaaattcaagagagtgcctcctttg 20309869  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 4183498 - 4183455
Alignment:
Q  178 tgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    |||| |||||||||||||  ||||||||||||||||||||||||    
T  4183498 tgtgtaacccttccattcgtaaattcaagatattgcctcctttg 4183455  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 4744339 - 4744296
Alignment:
Q  178 tgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    |||| |||||||||||||  ||||||||||||||||||||||||    
T  4744339 tgtgtaacccttccattcgtaaattcaagatattgcctcctttg 4744296  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 9820391 - 9820340
Alignment:
Q  170 cgctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    |||||||||||||||||||||||||  |||||  || |||||||||||||||    
T  9820391 cgctgttttgtggaacccttccattagaaaatataacatattgcctcctttg 9820340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 9826053 - 9826002
Alignment:
Q  170 cgctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttg 221  Q
    |||||||||||||||||||||||||| |||||  || |||||||| ||||||    
T  9826053 cgctgttttgtggaacccttccattcgaaaatataacatattgccccctttg 9826002  T

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