View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_low_69 (Length: 227)

Name: NF11977_low_69
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_low_69
NF11977_low_69
[»] chr6 (23 HSPs)
chr6 (7-171)||(5352813-5352977)
chr6 (17-132)||(5177930-5178045)
chr6 (17-132)||(5279755-5279870)
chr6 (17-121)||(5180774-5180878)
chr6 (7-170)||(5427081-5427244)
chr6 (19-134)||(5242499-5242614)
chr6 (7-121)||(5346210-5346324)
chr6 (17-130)||(5688894-5689007)
chr6 (23-127)||(5100812-5100916)
chr6 (23-127)||(5135913-5136017)
chr6 (7-132)||(5126618-5126743)
chr6 (7-131)||(5065439-5065563)
chr6 (17-132)||(5098402-5098517)
chr6 (23-121)||(5398243-5398341)
chr6 (16-121)||(5283224-5283329)
chr6 (16-121)||(5256114-5256219)
chr6 (24-131)||(23127300-23127407)
chr6 (18-135)||(5072668-5072785)
chr6 (11-127)||(5156007-5156123)
chr6 (7-127)||(5351581-5351701)
chr6 (11-127)||(5372282-5372398)
chr6 (8-120)||(5253715-5253827)
chr6 (9-121)||(5448792-5448904)
[»] chr3 (4 HSPs)
chr3 (7-162)||(47985352-47985507)
chr3 (7-162)||(48003926-48004081)
chr3 (7-162)||(47994639-47994794)
chr3 (7-162)||(48013211-48013366)
[»] chr7 (1 HSPs)
chr7 (7-130)||(36212912-36213035)
[»] chr4 (4 HSPs)
chr4 (7-132)||(4132607-4132729)
chr4 (18-129)||(4122636-4122747)
chr4 (57-131)||(7884145-7884219)
chr4 (7-111)||(4337083-4337187)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 5352977 - 5352813
Alignment:
Q  7 tgaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatt 106  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  5352977 tgaggaggggcagagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaatt 5352878  T
Q  107 tatctggtatatgataaaccaattggcaagactttggatttatatcatttaccagatttgaatgt 171  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5352877 tatctggtatatgataaaccaattggaaagactttggatttatatcatttaccagatttgaatgt 5352813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 5177930 - 5178045
Alignment:
Q  17 cagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtat 116  Q
    |||||||||||||||||||| || ||  || ||||||| ||||| |||||||||||||||||  ||||||| |||||||| |||||| ||||||| ||||    
T  5177930 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5178029  T
Q  117 atgataaaccaattgg 132  Q
    ||||| ||||||||||    
T  5178030 atgatgaaccaattgg 5178045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 5279755 - 5279870
Alignment:
Q  17 cagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtat 116  Q
    |||||||||||||||||||| || ||  || ||||||| ||||| |||||||||||||||||  ||||||| |||||||| |||||| ||||||| ||||    
T  5279755 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5279854  T
Q  117 atgataaaccaattgg 132  Q
    ||||| ||||||||||    
T  5279855 atgatgaaccaattgg 5279870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 5180878 - 5180774
Alignment:
Q  17 cagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtat 116  Q
    ||||| ||||||||||| || || |||||| ||||||| ||||| ||| |||||||||||||  ||||||| |||||||||||| |||||||||||||||    
T  5180878 cagagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaatttatctggtat 5180779  T
Q  117 atgat 121  Q
    |||||    
T  5180778 atgat 5180774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 5427081 - 5427244
Alignment:
Q  7 tgaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatt 106  Q
    |||||||| | | ||||||||||||||||| || || ||| ||||| | ||||| ||| |||||||||||||  ||||| | |||| |||||||  | ||    
T  5427081 tgaggagggggaaagagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtt 5427180  T
Q  107 tatctggtatatgataaaccaattggcaagactttggatttatatcatttaccagatttgaatg 170  Q
    ||||| ||||||||| ||||||||||||| |   |||| ||||||||| |||||||||||||||    
T  5427181 tatctcgtatatgatgaaccaattggcaaaaaaatggagttatatcatgtaccagatttgaatg 5427244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 5242614 - 5242499
Alignment:
Q  19 gagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatat 118  Q
    ||||||||||| |||||| || || ||| ||||||| ||||| ||| |||||||||||||  ||||||| ||||||||||||  | ||||||| ||||||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  119 gataaaccaattggca 134  Q
    ||| ||||||||||||    
T  5242514 gatgaaccaattggca 5242499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 5346210 - 5346324
Alignment:
Q  7 tgaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatt 106  Q
    ||||||||  |||||||| ||||||||||| || || ||| ||||||| ||||| || |||||| |||||||| ||||||| |||||||||||| |||||    
T  5346210 tgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatt 5346309  T
Q  107 tatctggtatatgat 121  Q
    |||||  ||||||||    
T  5346310 tatctcatatatgat 5346324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 5689007 - 5688894
Alignment:
Q  17 cagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtat 116  Q
    |||||||||||||||||||| || ||  || ||||||| ||||| |||  ||||||||||||  ||||||| |||||||| |||||| ||||||| ||||    
T  5689007 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5688908  T
Q  117 atgataaaccaatt 130  Q
    ||||| ||||||||    
T  5688907 atgatgaaccaatt 5688894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 5100916 - 5100812
Alignment:
Q  23 gtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgata 122  Q
    |||||||||||||| || |||||| ||||||| ||||| |||||||||||||||||  ||||||| ||||| |||||| || ||||||| ||||| |||     
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5100817  T
Q  123 aacca 127  Q
    |||||    
T  5100816 aacca 5100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 5136017 - 5135913
Alignment:
Q  23 gtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgata 122  Q
    |||||||||||||| || |||||| ||||||| ||||| |||||||||||||||||  ||||||| ||||| |||||| || ||||||| ||||| |||     
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5135918  T
Q  123 aacca 127  Q
    |||||    
T  5135917 aacca 5135913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 5126743 - 5126618
Alignment:
Q  7 tgaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatt 106  Q
    |||||||| | ||||||||||||||||||| ||  | ||| ||||||| ||| | |||||||||||| ||||  ||||||| |||||||||||| |  ||    
T  5126743 tgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtt 5126644  T
Q  107 tatctggtatatgataaaccaattgg 132  Q
    |||||  |||||||| ||||||||||    
T  5126643 tatctcatatatgatgaaccaattgg 5126618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 5065563 - 5065439
Alignment:
Q  7 tgaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatt 106  Q
    |||||||| ||||||||||||||||||||| || || ||  | ||||| ||  | |||||||||||||||||  ||||| | ||||||| ||||||| ||    
T  5065563 tgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtt 5065464  T
Q  107 tatctggtatatgataaaccaattg 131  Q
    |||||  |||||||| |||||||||    
T  5065463 tatctcatatatgatgaaccaattg 5065439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 5098402 - 5098517
Alignment:
Q  17 cagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtat 116  Q
    ||||| ||| |||||||||| || || ||| ||||||| |||||  |||||||||| |||||  ||||||| ||||| |||||| || ||||||||||||    
T  5098402 cagagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtat 5098501  T
Q  117 atgataaaccaattgg 132  Q
    ||||| ||| ||||||    
T  5098502 atgatgaacaaattgg 5098517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 5398243 - 5398341
Alignment:
Q  23 gtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 121  Q
    |||||||||||||| || || ||| ||||||| ||||| ||  ||||||| ||||||  |||||| ||||||||||||||| ||||||| |||||||||    
T  5398243 gtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 5283329 - 5283224
Alignment:
Q  16 gcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggta 115  Q
    |||||| ||| |||||||||| || || ||| ||||||| |||||  |  |||||||||| ||  ||||||| |||||||||||| ||||||||||||||    
T  5283329 gcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggta 5283230  T
Q  116 tatgat 121  Q
    ||||||    
T  5283229 tatgat 5283224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 5256219 - 5256114
Alignment:
Q  16 gcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggta 115  Q
    |||||| ||| |||||||||| || || ||| ||||||| ||||| ||  |||||||  |||||  |||||| |||||||||||| |||||||| |||||    
T  5256219 gcagagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggta 5256120  T
Q  116 tatgat 121  Q
    ||||||    
T  5256119 tatgat 5256114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 23127407 - 23127300
Alignment:
Q  24 tagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataa 123  Q
    |||||||||||   || || ||| ||||| | ||||| ||||| |||||||||||| ||||| | |||||||| |||||| ||||||| ||||||||| |    
T  23127407 tagtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatga 23127308  T
Q  124 accaattg 131  Q
    || |||||    
T  23127307 actaattg 23127300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 5072785 - 5072668
Alignment:
Q  18 agagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtata 117  Q
    ||||| ||||||||||||| || || ||| || |||| ||||| || |||||| |||||||   |||||| ||||| ||||||| |||||||||  ||||    
T  5072785 agagattagtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatctcatata 5072686  T
Q  118 tgataaaccaattggcaa 135  Q
     ||| || ||||||||||    
T  5072685 cgatgaatcaattggcaa 5072668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 5156123 - 5156007
Alignment:
Q  11 gaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatc 110  Q
    |||| |||||| |||||||||||| | || || ||| ||||||| |||||   | ||||||| |||| |  |||||| ||||||||||||||| ||||||    
T  5156123 gaggggcagagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagtttatc 5156024  T
Q  111 tggtatatgataaacca 127  Q
    | ||||| ||| |||||    
T  5156023 ttgtatacgatgaacca 5156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 5351581 - 5351701
Alignment:
Q  7 tgaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatt 106  Q
    |||||||| ||||||  ||||||||||||| || ||| || ||||||| |||||  || ||||||| ||||||  || ||| ||||| ||||||  | ||    
T  5351581 tgaggaggggcagaggttagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagtt 5351680  T
Q  107 tatctggtatatgataaacca 127  Q
    ||||| ||||||||| |||||    
T  5351681 tatctcgtatatgatgaacca 5351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 5372282 - 5372398
Alignment:
Q  11 gaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatc 110  Q
    |||| |||||| |||||||||||| | || || ||| ||||||| ||| |   | ||||| | ||||||  |||||| ||||||||||||||||||||||    
T  5372282 gaggggcagagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaatttatc 5372381  T
Q  111 tggtatatgataaacca 127  Q
    | ||||| ||| |||||    
T  5372382 tcgtatacgatgaacca 5372398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 5253715 - 5253827
Alignment:
Q  8 gaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaattt 107  Q
    ||||||| ||| |||||| ||| |||||| || || ||  | ||||| ||| | |||||||||||||||||  ||||||| ||||||| ||| ||| |||    
T  5253715 gaggaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagttt 5253814  T
Q  108 atctggtatatga 120  Q
    ||||  |||||||    
T  5253815 atctcatatatga 5253827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 5448792 - 5448904
Alignment:
Q  9 aggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaattta 108  Q
    |||||| ||||||  ||||||||||||| || |||||  ||||||| ||| | ||| ||||||| ||||||  |||||  ||| ||||||||  | | ||    
T  5448792 aggaggggcagaggttagtatcaagtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtata 5448891  T
Q  109 tctggtatatgat 121  Q
    |||||||||||||    
T  5448892 tctggtatatgat 5448904  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 47985507 - 47985352
Alignment:
Q  7 tgaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatt 106  Q
    |||||||| | ||||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||    
T  47985507 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 47985408  T
Q  107 tatctggtatatgataaaccaattggcaagactttggatttatatcatttaccaga 162  Q
    ||||| |||||||||||  |||||||||| ||| | ||| | ||||||||||||||    
T  47985407 tatcttgtatatgataattcaattggcaaaactattgatctgtatcatttaccaga 47985352  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 48004081 - 48003926
Alignment:
Q  7 tgaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatt 106  Q
    |||||||| | ||||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||    
T  48004081 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 48003982  T
Q  107 tatctggtatatgataaaccaattggcaagactttggatttatatcatttaccaga 162  Q
    ||||| |||||||||||  |||||||||| ||| | ||| | ||||||||||||||    
T  48003981 tatcttgtatatgataattcaattggcaaaactattgatctgtatcatttaccaga 48003926  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 47994794 - 47994639
Alignment:
Q  7 tgaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatt 106  Q
    |||||||| | ||||||||||||||||||| ||  ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||    
T  47994794 tgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 47994695  T
Q  107 tatctggtatatgataaaccaattggcaagactttggatttatatcatttaccaga 162  Q
    ||||| |||||||||||  |||||||||| ||| | ||| | ||||||||||||||    
T  47994694 tatcttgtatatgataattcaattggcaaaactattgatctgtatcatttaccaga 47994639  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 48013366 - 48013211
Alignment:
Q  7 tgaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatt 106  Q
    |||||||| | ||||||||||||||||||| ||  ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||    
T  48013366 tgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 48013267  T
Q  107 tatctggtatatgataaaccaattggcaagactttggatttatatcatttaccaga 162  Q
    ||||| |||||||||||  |||||||||| ||| | ||| | ||||||||||||||    
T  48013266 tatcttgtatatgataattcaattggcaaaactattgatctgtatcatttaccaga 48013211  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 36213035 - 36212912
Alignment:
Q  7 tgaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatt 106  Q
    |||||||| ||||||| ||||||||||||| || || ||||| ||| | ||||| |||||||||||||||||   |||||| |||||||||||| | |||    
T  36213035 tgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatt 36212936  T
Q  107 tatctggtatatgataaaccaatt 130  Q
    |||||  | |||||| ||||||||    
T  36212935 tatctcatttatgatgaaccaatt 36212912  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 4132729 - 4132607
Alignment:
Q  7 tgaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatt 106  Q
    |||||||  ||||||||||||||||| |||||| || ||||||||||| ||| |   ||||||||||| |||  ||||||| |||| ||||||| || ||    
T  4132729 tgaggagtggcagagagtagtatcaaatatggaacctggtgacaaagtcgagat---tgttgtttttgggaacagtttcattgtgatgaagacagcagtt 4132633  T
Q  107 tatctggtatatgataaaccaattgg 132  Q
    |||||  |||||||| ||||||||||    
T  4132632 tatctcatatatgatgaaccaattgg 4132607  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 4122747 - 4122636
Alignment:
Q  18 agagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtata 117  Q
    ||||||| ||||||| |||||| || ||||||||||| ||| | |||||||||||||  ||  ||||||| |||| ||||||| || |||||||  ||||    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  118 tgataaaccaat 129  Q
    |||| |||||||    
T  4122647 tgatgaaccaat 4122636  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 7884219 - 7884145
Alignment:
Q  57 aggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattg 131  Q
    |||||||||||||||||   |||   ||||| |||||||| |||||||||||||| || |||||| |||||||||    
T  7884219 aggtggttgttgtttttacaaatgaattcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaattg 7884145  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 4337083 - 4337187
Alignment:
Q  7 tgaggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatt 106  Q
    |||||||  ||||||||| ||||||| |||||| || ||||| ||||| ||| | ||||||||||||| |||  |||  || |||| || ||||||| ||    
T  4337083 tgaggagtggcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 4337182  T
Q  107 tatct 111  Q
    |||||    
T  4337183 tatct 4337187  T

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