View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_low_7 (Length: 698)

Name: NF11977_low_7
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_low_7
NF11977_low_7
[»] chr2 (13 HSPs)
chr2 (107-647)||(40894564-40895104)
chr2 (108-245)||(31621831-31621970)
chr2 (352-475)||(31620525-31620648)
chr2 (109-245)||(36668882-36669020)
chr2 (322-475)||(35306017-35306170)
chr2 (325-476)||(35298555-35298706)
chr2 (282-475)||(36669023-36669216)
chr2 (371-475)||(31622062-31622166)
chr2 (352-452)||(36666225-36666325)
chr2 (386-475)||(4753528-4753617)
chr2 (414-472)||(4755036-4755094)
chr2 (414-475)||(31621112-31621173)
chr2 (414-463)||(36666795-36666844)
[»] chr3 (12 HSPs)
chr3 (107-475)||(37464683-37465049)
chr3 (352-475)||(11137912-11138035)
chr3 (390-477)||(19801784-19801871)
chr3 (340-454)||(37463700-37463814)
chr3 (327-476)||(18912547-18912696)
chr3 (350-478)||(9099557-9099685)
chr3 (394-475)||(20997633-20997714)
chr3 (349-475)||(18939788-18939915)
chr3 (162-245)||(19801947-19802030)
chr3 (430-477)||(36163381-36163428)
chr3 (396-477)||(20998993-20999074)
chr3 (430-475)||(36164592-36164637)
[»] chr7 (10 HSPs)
chr7 (286-473)||(42537718-42537905)
chr7 (296-475)||(45291835-45292014)
chr7 (296-475)||(45295960-45296139)
chr7 (312-474)||(40601718-40601882)
chr7 (359-475)||(38516620-38516736)
chr7 (336-466)||(41740948-41741080)
chr7 (312-475)||(40600711-40600876)
chr7 (387-475)||(41739622-41739710)
chr7 (409-475)||(38517746-38517812)
chr7 (325-402)||(33061630-33061707)
[»] chr4 (11 HSPs)
chr4 (328-472)||(8480862-8481006)
chr4 (108-245)||(8479848-8479989)
chr4 (327-475)||(41774644-41774792)
chr4 (168-462)||(31409326-31409614)
chr4 (387-475)||(30829927-30830015)
chr4 (282-466)||(8479660-8479845)
chr4 (334-475)||(52190289-52190430)
chr4 (371-475)||(52189186-52189290)
chr4 (336-475)||(31410533-31410671)
chr4 (325-475)||(41780164-41780314)
chr4 (359-471)||(23545294-23545406)
[»] scaffold0115 (6 HSPs)
scaffold0115 (282-475)||(4336-4529)
scaffold0115 (282-475)||(12076-12269)
scaffold0115 (108-245)||(4532-4671)
scaffold0115 (108-245)||(12272-12411)
scaffold0115 (328-475)||(5994-6141)
scaffold0115 (328-475)||(13734-13881)
[»] chr6 (8 HSPs)
chr6 (296-475)||(9448648-9448827)
chr6 (312-475)||(227121-227285)
chr6 (312-475)||(226121-226284)
chr6 (386-476)||(18191745-18191835)
chr6 (430-475)||(11020404-11020449)
chr6 (430-474)||(11020178-11020222)
chr6 (431-475)||(18193022-18193066)
chr6 (430-478)||(31855648-31855696)
[»] chr1 (14 HSPs)
chr1 (325-478)||(49919612-49919765)
chr1 (281-475)||(26529508-26529701)
chr1 (351-476)||(26531027-26531152)
chr1 (282-475)||(36573962-36574155)
chr1 (108-242)||(49917586-49917722)
chr1 (107-245)||(26529703-26529843)
chr1 (108-245)||(36574158-36574297)
chr1 (352-475)||(36575475-36575598)
chr1 (414-475)||(36574956-36575017)
chr1 (359-475)||(35062564-35062680)
chr1 (388-475)||(35063596-35063683)
chr1 (414-475)||(26530502-26530563)
chr1 (162-275)||(17332769-17332879)
chr1 (393-475)||(49917389-49917470)
[»] chr5 (5 HSPs)
chr5 (108-244)||(16728009-16728147)
chr5 (282-474)||(16727813-16728005)
chr5 (387-476)||(38921454-38921543)
chr5 (359-472)||(35967351-35967464)
chr5 (388-475)||(35968670-35968757)
[»] chr8 (11 HSPs)
chr8 (312-475)||(5005708-5005871)
chr8 (325-476)||(5014735-5014886)
chr8 (352-474)||(3872224-3872346)
chr8 (371-476)||(17863465-17863570)
chr8 (414-475)||(12887725-12887786)
chr8 (390-475)||(37241028-37241113)
chr8 (371-475)||(17864672-17864776)
chr8 (352-475)||(3870768-3870891)
chr8 (386-475)||(32565606-32565695)
chr8 (422-475)||(12888252-12888305)
chr8 (437-477)||(12887022-12887062)


Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 107 - 647
Target Start/End: Original strand, 40894564 - 40895104
Alignment:
Q  107 agttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagtttgagttgtgttggagaagaagaaggaattagaggtgttggagaag 206  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  40894564 agttatctgtataaatatgaaaaattctgggtagagatattggagaatatgagtttgagttgttttggagaagaagaagaaattagaggtgttggagaag 40894663  T
Q  207 atgaaggtagtaacataattatggtcattttggtccctctcgcctacatggacatccatcaatttagtcatttgcctacgtggaaggccaatacagcaac 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40894664 atgaaggtagtaacataattatggtcattttggtccctctcgcctacatggacatccatcaatttagtcatttgcctacgtggaaggccaatacagcaac 40894763  T
Q  307 tgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagtt 406  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40894764 tgaagtggcaagtctagcggccagattagcatagttaacgcccagttaacgttttggacgtgaatgactaacggaaaagacattgggggagtttttagtt 40894863  T
Q  407 cgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactcaaagaatggatgctaagcctttttgagaact 506  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40894864 cgtttcattgatccagggacgtacctgatagcgaggtacacttttagggatccaaatgagggtttactcaaagaatggatgctaagcctttttgagaact 40894963  T
Q  507 ctcatagcataaatatagcggttgttcttaatactaagtatgactgatgcataataataggtggaaagaagcaaatgttaccacttaccattgaagcgag 606  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40894964 ctcatagcataaatctagcggttgttcttaatactaagtatgactgatgcataataataggtggaaagaagcaaatgttaccacttaccattgaagcgag 40895063  T
Q  607 tggatgttatcgttaagaagaaattaagactttggcaaagc 647  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  40895064 tggatgttatcgttaagaagaaattaagactttggctaagc 40895104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 108 - 245
Target Start/End: Original strand, 31621831 - 31621970
Alignment:
Q  108 gttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggagaa 205  Q
    ||||| ||||| |||||||||||||||||| | |||||||||| || ||| ||||  ||||||||||||||||||||||| |||| ||||||||||||||    
T  31621831 gttatttgtatgaatatgaaaaattatgggcagagatgttggacaaaatgtgtttatgagttgtgttggagaagaagaagtaattggaggtgttggagaa 31621930  T
Q  206 gatgaaggtagtaacataattatggtcattttggtccctc 245  Q
    |||||||  |  ||||||||| ||||||||||||||||||    
T  31621931 gatgaagacaagaacataattctggtcattttggtccctc 31621970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 352 - 475
Target Start/End: Complemental strand, 31620648 - 31620525
Alignment:
Q  352 ttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttc 451  Q
    |||||| ||||||| || ||||||||||||| |||||||| | |||||||| ||||||||  ||||| || |||||||||||||||||||||||||||||    
T  31620648 ttaacgttttggacttgtatgactaacggaacagacattgagcgagtttttggttcgttttcttgattcaaggacgtatctgatagcgaggtacactttc 31620549  T
Q  452 agggatccaaatgagagtttactc 475  Q
    |||||  |||||||| ||||||||    
T  31620548 agggactcaaatgagggtttactc 31620525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 109 - 245
Target Start/End: Original strand, 36668882 - 36669020
Alignment:
Q  109 ttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggagaag 206  Q
    |||| ||||| |||||||||||||||||| | | |||||||| |  ||||||||  ||||||||||||||||||||||| |||| |||||||||||||||    
T  36668882 ttatttgtatgaatatgaaaaattatgggcagaaatgttggacagaatgagtttatgagttgtgttggagaagaagaagtaattggaggtgttggagaag 36668981  T
Q  207 atgaaggtagtaacataattatggtcattttggtccctc 245  Q
    ||||||  |  ||||||||| ||||||||||||||||||    
T  36668982 atgaagacaagaacataattctggtcattttggtccctc 36669020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 322 - 475
Target Start/End: Original strand, 35306017 - 35306170
Alignment:
Q  322 agcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatcca 421  Q
    |||| |||||| ||||  |||||||| ||||||||| |||||| | ||||||||||| ||| |||| || |||||||||||  |||||||  ||||| ||    
T  35306017 agcgtccagatcagcaatgttaacgctcagttaacgttttggatgagaatgactaacagaagagactttcggggagtttttttttcgttttcttgattca 35306116  T
Q  422 gggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||| | | ||||||||||||||||||||||||| | ||||||| ||||||||    
T  35306117 gggacatgtttgatagcgaggtacactttcagggacctaaatgagggtttactc 35306170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 325 - 476
Target Start/End: Complemental strand, 35298706 - 35298555
Alignment:
Q  325 ggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccaggg 424  Q
    |||||||| ||||  |||||||| ||||||||| |||||| | |||||||||||| || |||| || |||||||||||  | |||||  ||||| |||||    
T  35298706 ggccagatcagcaatgttaacgctcagttaacgttttggatgggaatgactaacgaaagagactttcggggagttttttttgcgttttcttgattcaggg 35298607  T
Q  425 acgtatctgatagcgaggtacactttcagggatccaaatgagagtttactca 476  Q
    ||||   ||||||||||||||||||||||| | ||||||||| |||||||||    
T  35298606 acgtggttgatagcgaggtacactttcaggaacccaaatgagggtttactca 35298555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 282 - 475
Target Start/End: Original strand, 36669023 - 36669216
Alignment:
Q  282 ctacgtggaaggccaatacagcaactgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacgga 381  Q
    |||| ||||| |||||||||||| ||||||||||| || || ||  || || | ||| |||||   | |||||||| |||||| |    |||||||| ||    
T  36669023 ctacatggaaagccaatacagcagctgaagtggcatgtgtaacgaacacatcatcaccgttaatatcaagttaacgttttggatgcatttgactaacaga 36669122  T
Q  382 aaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    | |||||||| |||||||||||||| ||||  ||||| |||||||||  ||||||||||||| |||||||| |||||||||| || ||||||||    
T  36669123 acagacattgagggagtttttagtttgttttcttgattcagggacgtggctgatagcgaggtgcactttcatggatccaaattagggtttactc 36669216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 371 - 475
Target Start/End: Original strand, 31622062 - 31622166
Alignment:
Q  371 tgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtt 470  Q
    |||| ||||||| | |||||| |||||||||||||| ||||  ||||| |||||||||   ||||| ||||||||||||||||||| |||||| || |||    
T  31622062 tgacaaacggaacaaacattgagggagtttttagtttgttttcttgattcagggacgtggttgataacgaggtacactttcagggacccaaataagggtt 31622161  T
Q  471 tactc 475  Q
    |||||    
T  31622162 tactc 31622166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 352 - 452
Target Start/End: Complemental strand, 36666325 - 36666225
Alignment:
Q  352 ttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttc 451  Q
    |||||| |||| ||||| ||||||||||||| |||||||| || ||||||||||||||||  ||||| |||  | || ||| || |||||||||||||||    
T  36666325 ttaacgttttgaacgtgtatgactaacggaacagacattgaggaagtttttagttcgttttcttgattcagaaatgtgtctaattgcgaggtacactttc 36666226  T
Q  452 a 452  Q
    |    
T  36666225 a 36666225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 4753617 - 4753528
Alignment:
Q  386 acattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    |||||| ||||||||||  ||| ||| ||||||||||||||   ||||||||||||  ||||||||||||| ||||| ||| ||||||||    
T  4753617 acattgagggagtttttgattcatttaattgatccagggactggtctgatagcgagagacactttcagggacccaaacgagggtttactc 4753528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 414 - 472
Target Start/End: Original strand, 4755036 - 4755094
Alignment:
Q  414 ttgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagttta 472  Q
    |||||| |||||||| ||||||||||||| |||||||||| || ||||||||| |||||    
T  4755036 ttgatctagggacgtgtctgatagcgagggacactttcagagacccaaatgagggttta 4755094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 475
Target Start/End: Original strand, 31621112 - 31621173
Alignment:
Q  414 ttgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||||||||| | | ||||||||||||||||||| ||||| ||||||||  ||||||||    
T  31621112 ttgatccagggacatgtttgatagcgaggtacacttttagggacccaaatgaaggtttactc 31621173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 36666795 - 36666844
Alignment:
Q  414 ttgatccagggacgtatctgatagcgaggtacactttcagggatccaaat 463  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||| ||||||    
T  36666795 ttgatccagggacatatttgatagcgaggtacacttttagggacccaaat 36666844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 107 - 475
Target Start/End: Original strand, 37464683 - 37465049
Alignment:
Q  107 agttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggaga 204  Q
    |||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||||||   |||| ||| ||||||||||    
T  37464683 agttatctctatgaatatgaaaaattctgggtagagatgttggagaatatgagtttatgagttgtgttggagaagaag---gaatgagatgtgttggaga 37464779  T
Q  205 agatgaaggtagtaacataattatggtcattttggtccctctcgcctacatggacatccatcaatttagtcatttgcctacgtggaaggccaatacagca 304  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |  |||||| ||||||||||||    
T  37464780 agatgaagacagtaacataattatggtcagtttggtccctctcgcctacatggacatccatcaatttagtc-tttgcatgtgtggaatgccaatacagca 37464878  T
Q  305 actgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttag 404  Q
    |||||||||||||||||||| ||||||| | |||| ||||||  ||||||||| |||||||||||||||| ||||||| |||||||  |||||||||| |    
T  37464879 actgaagtggcaagtctagcagccagatcaacacaattaacgttcagttaacgttttggacgtgaatgacaaacggaagagacattcagggagtttttgg 37464978  T
Q  405 ttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    || |||||||||||| ||||| ||| |||||||||||  ||||||||||||| |||||| || ||||||||    
T  37464979 tttgtttcattgatctagggatgtacctgatagcgagcaacactttcagggacccaaattagggtttactc 37465049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 352 - 475
Target Start/End: Complemental strand, 11138035 - 11137912
Alignment:
Q  352 ttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttc 451  Q
    |||||| |||||||||| || ||||| | || |||||||| |||||||||| ||||||||   ||||||||||| || ||||||||||||||||| |||     
T  11138035 ttaacgttttggacgtgtataactaaagaaacagacattgagggagtttttggttcgttttcatgatccagggatgtgtctgatagcgaggtacattttt 11137936  T
Q  452 agggatccaaatgagagtttactc 475  Q
    || || ||||||||| ||||||||    
T  11137935 agagaaccaaatgagggtttactc 11137912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 477
Target Start/End: Complemental strand, 19801871 - 19801784
Alignment:
Q  390 tgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactcaa 477  Q
    ||||||||||||| |||||||| ||||||| | ||||||| |||||||||||||||||||||||||| |  |||||| ||||||||||    
T  19801871 tgggggagtttttggttcgtttaattgatctaaggacgtagctgatagcgaggtacactttcagggaccggaatgagggtttactcaa 19801784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 340 - 454
Target Start/End: Complemental strand, 37463814 - 37463700
Alignment:
Q  340 gttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcg 439  Q
    |||||| || |||||||| ||||||||| ||||||||| |||| ||||||| |  |||||||| | |||||||||||||||||||||||   ||||||||    
T  37463814 gttaacaccaagttaacgttttggacgtaaatgactaatggaagagacattagatgagtttttggatcgtttcattgatccagggacgtgcttgatagcg 37463715  T
Q  440 aggtacactttcagg 454  Q
    ||  |||||||||||    
T  37463714 agaaacactttcagg 37463700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 327 - 476
Target Start/End: Complemental strand, 18912696 - 18912547
Alignment:
Q  327 ccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggac 426  Q
    |||||| ||||  |||||||| ||||||||| |||||| | ||||||||||||||| |||| ||  ||||||||||  | |||||  ||||| |||||||    
T  18912696 ccagatcagcagtgttaacgctcagttaacgttttggatgggaatgactaacggaagagactttcagggagttttttttgcgttttcttgattcagggac 18912597  T
Q  427 gtatctgatagcgaggtacactttcagggatccaaatgagagtttactca 476  Q
     |   | |||| |||||||||||||||||| ||||||||| |||||||||    
T  18912596 atggttaatagtgaggtacactttcagggacccaaatgagggtttactca 18912547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 350 - 478
Target Start/End: Complemental strand, 9099685 - 9099557
Alignment:
Q  350 agttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactt 449  Q
    |||||||| ||||||| |   ||||||||||||   ||||||   |||||||| ||||||||||||||| |||||| ||   ||||||||||||||||||    
T  9099685 agttaacgttttggacttatttgactaacggaaccaacattgaaagagtttttggttcgtttcattgattcagggatgtgcttgatagcgaggtacactt 9099586  T
Q  450 tcagggatccaaatgagagtttactcaaa 478  Q
    | ||||| ||||||||| |||||||||||    
T  9099585 taagggacccaaatgagggtttactcaaa 9099557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 475
Target Start/End: Complemental strand, 20997714 - 20997633
Alignment:
Q  394 ggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||||| ||| |||| |||||||| |||| ||   ||||||||||||||| ||||||||| ||||||||| ||||||||    
T  20997714 ggagtttttggtttgttttattgatcctgggatgtgcttgatagcgaggtacattttcagggacccaaatgagggtttactc 20997633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 18939788 - 18939915
Alignment:
Q  349 cagttaacgctttggacgtg-aatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacac 447  Q
    ||||||||| |||||| | | |||||||||||||| |||| || ||||||||| |  | |||||  ||||   ||||||||   ||||||||| ||||||    
T  18939788 cagttaacgttttggatgggtaatgactaacggaagagactttcggggagtttgttttgcgttttcttgacttagggacgtggttgatagcgaagtacac 18939887  T
Q  448 tttcagggatccaaatgagagtttactc 475  Q
    ||||||||| ||||||||| ||||||||    
T  18939888 tttcagggacccaaatgagggtttactc 18939915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 19802030 - 19801947
Alignment:
Q  162 tgagttgtgttggagaagaagaaggaattagaggtgttggagaagatgaaggtagtaacataattatggtcattttggtccctc 245  Q
    ||||| ||| ||||||||| ||||||||| | ||  ||| ||||| |||||| || ||||||||| ||||||||||||||||||    
T  19802030 tgagtagtgatggagaagatgaaggaattgggggcattgaagaagttgaaggcagaaacataattgtggtcattttggtccctc 19801947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 430 - 477
Target Start/End: Complemental strand, 36163428 - 36163381
Alignment:
Q  430 tctgatagcgaggtacactttcagggatccaaatgagagtttactcaa 477  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  36163428 tctgatagcgagggacactttcagggatccaaatgaaggtttactcaa 36163381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 477
Target Start/End: Original strand, 20998993 - 20999074
Alignment:
Q  396 agtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactcaa 477  Q
    |||||||| ||| |||||||||| ||| || || ||||||| | | ||||||||||||||||| |||||||  |||||||||    
T  20998993 agtttttaattcatttcattgattcagtgatgtgtctgataacaatgtacactttcagggatctaaatgaggatttactcaa 20999074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 475
Target Start/End: Original strand, 36164592 - 36164637
Alignment:
Q  430 tctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  36164592 tctgatagcgagggacactttcagggacccaaatgagggtttactc 36164637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 286 - 473
Target Start/End: Complemental strand, 42537905 - 42537718
Alignment:
Q  286 gtggaaggccaatacagcaactgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaag 385  Q
    |||||| |||||||||||| ||||||||||||||||||| ||||||| | |||| ||||||  || |||||| |||||||||||||||| ||||||| ||    
T  42537905 gtggaatgccaatacagcagctgaagtggcaagtctagcagccagatcaacacaattaacgttcaattaacgttttggacgtgaatgacaaacggaagag 42537806  T
Q  386 acattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttac 473  Q
    ||||| ||||||||||| ||||||||||||||| |||||| ||| |||||||||||  ||||||||||||| |||| |||| ||||||    
T  42537805 acattcggggagtttttggttcgtttcattgattcagggatgtacctgatagcgagcaacactttcagggacccaactgagggtttac 42537718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 296 - 475
Target Start/End: Original strand, 45291835 - 45292014
Alignment:
Q  296 aatacagcaactgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattggggg 395  Q
    |||||| || |||||||||||||| || | | ||  | ||||| |||||| | | |||| || |||||| ||||||||||||||||| |||| ||| |||    
T  45291835 aatacaacagctgaagtggcaagtataacagacatgtcagcaccgttaacactctgttagcgttttggatgtgaatgactaacggaagagactttgaggg 45291934  T
Q  396 agtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||| ||||| ||| ||||| |||||| ||  |||||||||||||||||||||||||| ||||||||| ||||||||    
T  45291935 agtttttggttcgattccttgattcagggatgtgcctgatagcgaggtacactttcagggacccaaatgagggtttactc 45292014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 296 - 475
Target Start/End: Original strand, 45295960 - 45296139
Alignment:
Q  296 aatacagcaactgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattggggg 395  Q
    |||||| || |||||||||||||| || | | ||  | ||||| |||||| | | |||| || |||||| ||||||||||||||||| |||| ||| |||    
T  45295960 aatacaacagctgaagtggcaagtataacagacatgtcagcaccgttaacactctgttagcgttttggatgtgaatgactaacggaagagactttgaggg 45296059  T
Q  396 agtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||| ||||| ||| |||||||| ||| ||  |||||||||||||||||||| ||||| ||||||||| ||||||||    
T  45296060 agtttttggttcgattccttgatccatggatgtgcctgatagcgaggtacacttttagggacccaaatgagggtttactc 45296139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 312 - 474
Target Start/End: Original strand, 40601718 - 40601882
Alignment:
Q  312 tggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagtt--cgt 409  Q
    ||||||| | |||| |||||| |||| ||||||||| ||||||||| |||||| | ||||||||||||||| |||| || | |||||||||  ||  |||    
T  40601718 tggcaagaccagcgtccagatcagcagagttaacgctcagttaacgttttggatgggaatgactaacggaagagactttcgaggagttttttttttgcgt 40601817  T
Q  410 ttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttact 474  Q
    ||| ||| || ||||| ||  |||||||||||| ||||||||||||| ||||||||| |||||||    
T  40601818 ttccttgttctagggatgtgcctgatagcgaggcacactttcagggacccaaatgagggtttact 40601882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 359 - 475
Target Start/End: Complemental strand, 38516736 - 38516620
Alignment:
Q  359 tttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatc 458  Q
    |||||| ||||||||||||||| | | || ||| |||||||||| ||| | ||| |||||||||||| || ||||||||||| ||||||||||||||| |    
T  38516736 tttggatgtgaatgactaacgggagaaactttgagggagtttttggttggattccttgatccagggatgtgtctgatagcgatgtacactttcagggacc 38516637  T
Q  459 caaatgagagtttactc 475  Q
    |||||||| ||||||||    
T  38516636 caaatgagggtttactc 38516620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 41740948 - 41741080
Alignment:
Q  336 cacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgat 435  Q
    |||| |||||| |||||||||| |||||||||| ||||||||||||| | | ||||||||||||||| ||| |||| |||||||| |||||| | |||||    
T  41740948 cacacttaacggccagttaacgttttggacgtggatgactaacggaacaaatattgggggagtttttggttagtttaattgatccggggacgcagctgat 41741047  T
Q  436 --agcgaggtacactttcagggatccaaatgag 466  Q
      ||| ||||  ||||||||||| |||||||||    
T  41741048 agagcaaggtgaactttcagggacccaaatgag 41741080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 312 - 475
Target Start/End: Complemental strand, 40600876 - 40600711
Alignment:
Q  312 tggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagtt--cgt 409  Q
    ||||||| | |||| |||||| |||| || |||||| ||||||||| |||||||| ||||||||||||||| |||| || |||||||||||  ||   ||    
T  40600876 tggcaagaccagcgtccagatcagcagagctaacgctcagttaacgttttggacgggaatgactaacggaagagactttcggggagttttttttttgtgt 40600777  T
Q  410 ttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||| ||| |||| ||| ||  ||||||| |||| ||| ||||||||| ||||||||| ||||||||    
T  40600776 ttccttgttccaaggatgtgcctgatagagaggcacattttcagggacccaaatgagggtttactc 40600711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 41739710 - 41739622
Alignment:
Q  387 cattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    |||||||||||||||| |||||||||||||||| ||||| ||  |||||||||||  | ||||||||| | ||||||||| ||||||||    
T  41739710 cattgggggagtttttggttcgtttcattgatctagggatgtgcctgatagcgagcaatactttcaggaacccaaatgagggtttactc 41739622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 409 - 475
Target Start/End: Original strand, 38517746 - 38517812
Alignment:
Q  409 tttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    |||| ||||||||||||||| ||||||||||| ||| ||||| |||||  |||||||| ||||||||    
T  38517746 tttcgttgatccagggacgtgtctgatagcgatgtatacttttagggactcaaatgagggtttactc 38517812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 402
Target Start/End: Complemental strand, 33061707 - 33061630
Alignment:
Q  325 ggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagttttt 402  Q
    |||||||| ||||  ||||| |||||||||||| ||||||   ||||||||||||||| |||| || || ||||||||    
T  33061707 ggccagatcagcaatgttaatgcccagttaacgttttggataggaatgactaacggaagagactttcggagagttttt 33061630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 328 - 472
Target Start/End: Original strand, 8480862 - 8481006
Alignment:
Q  328 cagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacg 427  Q
    ||||| |||||||||||||  ||||||||| |||||| | ||||||||||||||| |||| |||||||||||||| || |||||||||||||||||||||    
T  8480862 cagatcagcacagttaacgatcagttaacgttttggatgggaatgactaacggaagagactttgggggagtttttggtgcgtttcattgatccagggacg 8480961  T
Q  428 tatctgatagcgaggtacactttcagggatccaaatgagagttta 472  Q
    |  ||||||||||| ||||||||||||||  ||||||||||||||    
T  8480962 tgactgatagcgagatacactttcagggactcaaatgagagttta 8481006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 8479989 - 8479848
Alignment:
Q  108 gttatctgtataaatatgaaaaattat-gggtaaagatgttggagaata-tgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggag 203  Q
    ||||| ||||| |||||||||| || | ||| |||||||||||| || | |||||||  |||||||||||||||||||||||||||| || |||||||||    
T  8479989 gttatttgtatgaatatgaaaattttttgggcaaagatgttggacaaaaatgagtttctgagttgtgttggagaagaagaaggaattggaagtgttggag 8479890  T
Q  204 aagatgaaggtagtaacataattatggtcattttggtccctc 245  Q
    |||||||||| || ||||||||| || |||||||||||||||    
T  8479889 aagatgaaggcaggaacataattctgatcattttggtccctc 8479848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 327 - 475
Target Start/End: Complemental strand, 41774792 - 41774644
Alignment:
Q  327 ccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggac 426  Q
    |||||| ||||  |||||||| ||||||||| ||||||   ||||||||||||||| | || || |||||||||||  | |||||  ||||| |||||||    
T  41774792 ccagatcagcagtgttaacgctcagttaacgttttggatcggaatgactaacggaagacactttcggggagttttttttgcgttttcttgattcagggac 41774693  T
Q  427 gtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||   ||||||||||||||||||||||||| ||||||||||||||||||    
T  41774692 gtggttgatagcgaggtacactttcagggacccaaatgagagtttactc 41774644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 168 - 462
Target Start/End: Complemental strand, 31409614 - 31409326
Alignment:
Q  168 gtgttggagaagaagaaggaattagaggtgttggagaagatgaaggtagtaacataattatggtcattttggtccctctcgcctacatggacatccatca 267  Q
    ||||||||||||| ||||||||| ||||  ||| |||||||||||| || ||||||||| ||||||||||| |||||| |  |||  ||||||||||       
T  31409614 gtgttggagaagatgaaggaattggaggcattgaagaagatgaaggcag-aacataattgtggtcattttgatccctccc--ctatgtggacatccaatg 31409518  T
Q  268 atttagtcatttgcctacgtggaaggccaatacagcaactgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgt 367  Q
      ||||||  ||||   | ||||||||||| ||| || |||||||||||||| || | | || || ||||| |||||| || |||||||| |||||| |     
T  31409517 gcttagtcccttgctagcatggaaggccaacacaacagctgaagtggcaagtataaccgacacatcagcaccgttaacaccaagttaacgttttggatgc 31409418  T
Q  368 gaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaa 462  Q
       |||||||||||| |||   || |||||||||| ||||||||  |||||||| ||||||   |||||||||||| |||||||||||| |||||    
T  31409417 atttgactaacggaacaga---tgagggagtttttggttcgtttatttgatccaaggacgtggttgatagcgaggtgcactttcagggacccaaa 31409326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 30830015 - 30829927
Alignment:
Q  387 cattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    |||||||||||||||| |||||||||||||||| ||||| ||  |||||||||||  ||||||||||||| ||||||||| ||||||||    
T  30830015 cattgggggagtttttggttcgtttcattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 30829927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 282 - 466
Target Start/End: Complemental strand, 8479845 - 8479660
Alignment:
Q  282 ctacgtggaaggccaatacagcaactgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacgga 381  Q
    ||||||||||| |||||||| ||||||| |||||| || || ||| || || |  || ||||| |  ||||||||  |||||| |  |||||||||||||    
T  8479845 ctacgtggaagaccaatacaacaactgaggtggcatgtgtaacggacacatcattaccgttaatgatcagttaacattttggatggaaatgactaacgga 8479746  T
Q  382 aaagacattgggggag-tttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgag 466  Q
    | |||| ||||||||| ||||| || ||||  ||||||||||| ||||  |||||||| || |||||||||||||| |||||||||    
T  8479745 agagactttgggggaggtttttggtgcgttgtattgatccaggaacgtggctgatagcaagatacactttcagggacccaaatgag 8479660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 334 - 475
Target Start/End: Original strand, 52190289 - 52190430
Alignment:
Q  334 agcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctg 433  Q
    |||||| ||||| || |||||||| |||||| |    ||||||||  || ||||||||||||||||||| |||||||| ||||||||| |||  |  |||    
T  52190289 agcacatttaacaccaagttaacgttttggatgcatttgactaacaaaacagacattgggggagtttttggttcgtttaattgatccatggatctggctg 52190388  T
Q  434 atagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    |||||||| | |||||||||||| ||||||||| ||||||||    
T  52190389 atagcgagatgcactttcagggacccaaatgagggtttactc 52190430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 371 - 475
Target Start/End: Complemental strand, 52189290 - 52189186
Alignment:
Q  371 tgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtt 470  Q
    |||||||||||| | |||||| | ||||||||  || |||| ||||||||||||| ||  ||||||||||||| |||||||||||| ||||||||| |||    
T  52189290 tgactaacggaacatacattgagcgagtttttgatttgtttaattgatccagggatgtggctgatagcgaggtgcactttcagggacccaaatgagggtt 52189191  T
Q  471 tactc 475  Q
    |||||    
T  52189190 tactc 52189186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 336 - 475
Target Start/End: Original strand, 31410533 - 31410671
Alignment:
Q  336 cacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgat 435  Q
    |||| ||||||  ||||||||| ||||||||||  |||||||||||| ||| |||| || |||||||  ||||||| |||||| |||| |||| ||||||    
T  31410533 cacacttaacgttcagttaacgttttggacgtgtgtgactaacggaacagatattgagg-agtttttgattcgtttaattgattcaggaacgtgtctgat 31410631  T
Q  436 agcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    |||||||| |||||||||| | | |||| || ||||||||    
T  31410632 agcgaggtgcactttcaggaacctaaataagggtttactc 31410671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 325 - 475
Target Start/End: Original strand, 41780164 - 41780314
Alignment:
Q  325 ggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccaggg 424  Q
    |||||||| ||||  |||||||| ||||||||| ||||||   ||||||||||||||| | || || | |||||||||  | |||||  ||||| ||||     
T  41780164 ggccagatcagcagtgttaacgctcagttaacgttttggatcggaatgactaacggaagacactttcgaggagttttttttgcgttttcttgattcagga 41780263  T
Q  425 acgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||   |||||||||||||||||||||| || ||||||||| ||||||||    
T  41780264 acgtggttgatagcgaggtacactttcagagacccaaatgagggtttactc 41780314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 359 - 471
Target Start/End: Original strand, 23545294 - 23545406
Alignment:
Q  359 tttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatc 458  Q
    |||||||||| |||||||| | || ||||||||  ||||||||| ||||||||  ||||| ||| ||||| ||||||||| ||||||||||||| |||      
T  23545294 tttggacgtgtatgactaatgaaacagacattgaaggagtttttggttcgttttcttgattcagagacgtgtctgatagcaaggtacactttcaaggact 23545393  T
Q  459 caaatgagagttt 471  Q
    |||||||| ||||    
T  23545394 caaatgagggttt 23545406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 282 - 475
Target Start/End: Complemental strand, 4529 - 4336
Alignment:
Q  282 ctacgtggaaggccaatacagcaactgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacgga 381  Q
    ||||| |||||||||||||||||||||| |||||| || || ||| || || ||||| |||||||  || |||||| |||||| | |||||||||| |||    
T  4529 ctacgcggaaggccaatacagcaactgaggtggcatgtgtaacggacacatcagcaccgttaacgatcaattaacgttttggatgggaatgactaatgga 4430  T
Q  382 aaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    | |||| |||||||||||||| || ||||||||||||| ||||||||  ||||||||||  |||||||| ||||||||||| ||| ||||||||    
T  4429 agagactttgggggagtttttggtgcgtttcattgatctagggacgtggctgatagcgatatacacttttagggatccaaacgagggtttactc 4336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 282 - 475
Target Start/End: Complemental strand, 12269 - 12076
Alignment:
Q  282 ctacgtggaaggccaatacagcaactgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacgga 381  Q
    ||||| |||||||||||||||||||||| |||||| || || ||| || || ||||| |||||||  || |||||| |||||| | |||||||||| |||    
T  12269 ctacgcggaaggccaatacagcaactgaggtggcatgtgtaacggacacatcagcaccgttaacgatcaattaacgttttggatgggaatgactaatgga 12170  T
Q  382 aaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    | |||| |||||||||||||| || ||||||||||||| ||||||||  ||||||||||  |||||||| ||||||||||| ||| ||||||||    
T  12169 agagactttgggggagtttttggtgcgtttcattgatctagggacgtggctgatagcgatatacacttttagggatccaaacgagggtttactc 12076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 4671 - 4532
Alignment:
Q  108 gttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagtttg--agttgtgttggagaagaagaaggaattagaggtgttggagaa 205  Q
    ||||| ||||| |||||||||| ||||||| |||||||||||| || |||||||||  ||||||||||||||||||||||||||| || || ||||||||    
T  4671 gttatttgtatgaatatgaaaatttatgggcaaagatgttggacaaaatgagtttgttagttgtgttggagaagaagaaggaattggaagttttggagaa 4572  T
Q  206 gatgaaggtagtaacataattatggtcattttggtccctc 245  Q
    |||||||| |  ||||||||| || |||||||||||||||    
T  4571 gatgaaggcatgaacataattctgatcattttggtccctc 4532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 12411 - 12272
Alignment:
Q  108 gttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagtttg--agttgtgttggagaagaagaaggaattagaggtgttggagaa 205  Q
    ||||| ||||| |||||||||| ||||||| |||||||||||| || |||||||||  ||||||||||||||||||||||||||| || || ||||||||    
T  12411 gttatttgtatgaatatgaaaatttatgggcaaagatgttggacaaaatgagtttgttagttgtgttggagaagaagaaggaattggaagttttggagaa 12312  T
Q  206 gatgaaggtagtaacataattatggtcattttggtccctc 245  Q
    |||||||| |  ||||||||| || |||||||||||||||    
T  12311 gatgaaggcatgaacataattctgatcattttggtccctc 12272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 328 - 475
Target Start/End: Original strand, 5994 - 6141
Alignment:
Q  328 cagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacg 427  Q
    ||||| ||||||||||| |  ||||||| | |||||||| ||||||||||| ||| |||  |||||||||||||| || ||||||||| ||| |||||||    
T  5994 cagatcagcacagttaatgatcagttaatgttttggacgggaatgactaacagaagagattttgggggagtttttggtgcgtttcattaatctagggacg 6093  T
Q  428 tatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
       ||||||||||||||||||||||||||  |||||||| ||||||||    
T  6094 gggctgatagcgaggtacactttcagggactcaaatgagggtttactc 6141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 328 - 475
Target Start/End: Original strand, 13734 - 13881
Alignment:
Q  328 cagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacg 427  Q
    ||||| ||||||||||| |  ||||||| | |||||||| ||||||||||| ||| |||  |||||||||||||| || ||||||||| ||| |||||||    
T  13734 cagatcagcacagttaatgatcagttaatgttttggacgggaatgactaacagaagagattttgggggagtttttggtgcgtttcattaatctagggacg 13833  T
Q  428 tatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
       ||||||||||||||||||||||||||  |||||||| ||||||||    
T  13834 gggctgatagcgaggtacactttcagggactcaaatgagggtttactc 13881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 296 - 475
Target Start/End: Original strand, 9448648 - 9448827
Alignment:
Q  296 aatacagcaactgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattggggg 395  Q
    |||||| || |||||||||||||| || | | ||  | ||||| |||||| | | |||| || |||||| |||||||||||| |||| |||| ||| |||    
T  9448648 aatacaacagctgaagtggcaagtataacagacatgtcagcaccgttaacactctgttagcgttttggatgtgaatgactaaaggaagagactttgaggg 9448747  T
Q  396 agtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||| ||||| ||| |||||||||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  9448748 agtttttggttcgattccttgatccagggatgtgtctgatagcgaggtacactttcagggacccaaatgagggtttactc 9448827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 312 - 475
Target Start/End: Original strand, 227121 - 227285
Alignment:
Q  312 tggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagtt-cgtt 410  Q
    ||||||| | |||| |||||| |||| ||||||| | ||||||||| |||||| | |||||||||||||||||||| || |||||||||||  || ||||    
T  227121 tggcaagaccagcgtccagatcagcagagttaacactcagttaacgttttggatgggaatgactaacggaaaagactttcggggagtttttttttgcgtt 227220  T
Q  411 tcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    || ||| |||| ||| ||  || |||| |||  |||||||||| || ||||||||| ||||||||    
T  227221 tccttgttccatggatgtgcctaatagtgagacacactttcagagacccaaatgagggtttactc 227285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 475
Target Start/End: Complemental strand, 226284 - 226121
Alignment:
Q  312 tggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgttt 411  Q
    ||||||| | |||| ||| || |||| ||||||||  ||||||||| | || ||| |||||| |||| ||| |||| ||  ||||||||||  | |||||    
T  226284 tggcaagaccagcgtccaaatcagcagagttaacgttcagttaacgttctgaacgggaatgattaacagaagagactttcagggagttttttttgcgttt 226185  T
Q  412 cattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    | ||| |||| ||| ||  |||||||||||| ||||||||| ||| ||||||||| ||||||||    
T  226184 ccttgttccatggatgtgcctgatagcgaggcacactttcaaggacccaaatgagggtttactc 226121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 476
Target Start/End: Complemental strand, 18191835 - 18191745
Alignment:
Q  386 acattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactca 476  Q
    |||||||||||||||||  ||| ||  ||||||  ||||||   |||||||||| || ||||||||||||| ||||||||| |||||||||    
T  18191835 acattgggggagtttttgattcattaaattgattgagggactggtctgatagcgtgggacactttcagggacccaaatgagggtttactca 18191745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 475
Target Start/End: Original strand, 11020404 - 11020449
Alignment:
Q  430 tctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  11020404 tctgatagcgagggacactttcagggacccaaatgagggtttactc 11020449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 11020222 - 11020178
Alignment:
Q  430 tctgatagcgaggtacactttcagggatccaaatgagagtttact 474  Q
    |||||||| |||| ||||||||||||| |||||||||||||||||    
T  11020222 tctgatagtgagggacactttcagggacccaaatgagagtttact 11020178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 18193022 - 18193066
Alignment:
Q  431 ctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  18193022 ctgatagcgagggacactttcagggacccaaatgagggtttactc 18193066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 430 - 478
Target Start/End: Complemental strand, 31855696 - 31855648
Alignment:
Q  430 tctgatagcgaggtacactttcagggatccaaatgagagtttactcaaa 478  Q
    ||||||||||||  |||||||||  ||| ||||||||||||||||||||    
T  31855696 tctgatagcgagagacactttcaaagattcaaatgagagtttactcaaa 31855648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 325 - 478
Target Start/End: Original strand, 49919612 - 49919765
Alignment:
Q  325 ggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccaggg 424  Q
    |||||||| || ||||||||||  ||||||||| | |||| | |||||||| | |||| |||| |||||||||||||| || ||||||||||||||||||    
T  49919612 ggccagatcagtacagttaacgatcagttaacgttctggatgggaatgactgatggaagagactttgggggagtttttggtgcgtttcattgatccaggg 49919711  T
Q  425 acgtatctgatagcgaggtacactttcagggatccaaatgagagtttactcaaa 478  Q
    | ||  |||||||||| | ||||||||| ||| |||||||||||||||||||||    
T  49919712 aagtgactgatagcgatgcacactttcaaggacccaaatgagagtttactcaaa 49919765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 281 - 475
Target Start/End: Complemental strand, 26529701 - 26529508
Alignment:
Q  281 cctacgtggaaggccaatacagcaactgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacgg 380  Q
    ||||||||||| |||| |||| || ||||||||| | || || ||| || || ||||| ||||||  | |||||||| |||||| |    |||||||| |    
T  26529701 cctacgtggaaagcca-tacaacagctgaagtggtatgtgtaacggacaaatcagcaccgttaacatcaagttaacgttttggatgcatttgactaacag 26529603  T
Q  381 aaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    || | |||||| |||||||||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  26529602 aacaaacattgagggagtttttagttcgttttcttgattcagggacgtgtctgatagcgaggtacactttcagggacccaaatgagggtttactc 26529508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 351 - 476
Target Start/End: Original strand, 26531027 - 26531152
Alignment:
Q  351 gttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacacttt 450  Q
    ||||||| |||||||||| ||||||| | ||| |||||||| |||||||||| ||||||||  ||||| ||||||||| ||| |||||||||||||||||    
T  26531027 gttaacgttttggacgtgtatgactagcagaagagacattgagggagtttttggttcgttttcttgattcagggacgtgtctaatagcgaggtacacttt 26531126  T
Q  451 cagggatccaaatgagagtttactca 476  Q
    |||||| | ||||||| |||||||||    
T  26531127 cagggaccaaaatgagggtttactca 26531152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 282 - 475
Target Start/End: Complemental strand, 36574155 - 36573962
Alignment:
Q  282 ctacgtggaaggccaatacagcaactgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacgga 381  Q
    |||||||||| ||||||| | || ||||||||||| || || ||| || || ||||| |||| |  | |||||||| |||||| |    |||||||||||    
T  36574155 ctacgtggaaagccaatataacagctgaagtggcatgtgtaacggacacatcagcaccgttagcatcaagttaacgttttggatgcatttgactaacgga 36574056  T
Q  382 aaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    | |||||||| |||||||||||||||||||  ||||| |||||||||   ||||||||||||||||||||||||| | ||||||| ||||||||    
T  36574055 acagacattgagggagtttttagttcgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacctaaatgagtgtttactc 36573962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 49917722 - 49917586
Alignment:
Q  108 gttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggagaa 205  Q
    ||||| ||||| |||||||||| || |||| | |||||||||| || ||||||||  |||||||||||||||||||||||||||| |||||||| |||||    
T  49917722 gttatttgtatgaatatgaaaatttctgggcagagatgttggataaaatgagtttatgagttgtgttggagaagaagaaggaattggaggtgtttgagaa 49917623  T
Q  206 gatgaaggtagtaacataattatggtcattttggtcc 242  Q
    |||| ||| |  ||||||||| |||||||||||||||    
T  49917622 gatggaggcaagaacataattctggtcattttggtcc 49917586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 107 - 245
Target Start/End: Complemental strand, 26529843 - 26529703
Alignment:
Q  107 agttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggaga 204  Q
    |||||| ||||| |||||||||||||||||  | |||||||||| |  ||||||||  ||||||| ||||||||||||||| |||| |||||||||||||    
T  26529843 agttatttgtatgaatatgaaaaattatggacatagatgttggacagaatgagtttatgagttgttttggagaagaagaagtaattggaggtgttggaga 26529744  T
Q  205 agatgaaggtagtaacataattatggtcattttggtccctc 245  Q
     |||||||  |  ||||||||| ||||||||||||||||||    
T  26529743 tgatgaagacaagaacataattctggtcattttggtccctc 26529703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 36574297 - 36574158
Alignment:
Q  108 gttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggagaa 205  Q
    ||||| ||||| ||||||||||||| |||| | |||||||| | || ||||||||  |||||||||||||||||| |||| |||| ||||||||||||||    
T  36574297 gttatttgtatgaatatgaaaaattctgggcagagatgttgtacaaaatgagtttatgagttgtgttggagaagatgaagtaattggaggtgttggagaa 36574198  T
Q  206 gatgaaggtagtaacataattatggtcattttggtccctc 245  Q
    ||||||   |  ||||||||| ||||||||||||||||||    
T  36574197 gatgaaaacaagaacataattttggtcattttggtccctc 36574158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 352 - 475
Target Start/End: Original strand, 36575475 - 36575598
Alignment:
Q  352 ttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttc 451  Q
    |||||| ||||||| || ||||||||||||| |||||||| || ||||||| ||||||||  |||||  | |||||| ||||||||||||||||||||||    
T  36575475 ttaacgttttggacttgtatgactaacggaacagacattgaggaagtttttggttcgttttcttgatttaaggacgtgtctgatagcgaggtacactttc 36575574  T
Q  452 agggatccaaatgagagtttactc 475  Q
    |||||  |||||||| ||||||||    
T  36575575 agggactcaaatgagggtttactc 36575598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 414 - 475
Target Start/End: Complemental strand, 36575017 - 36574956
Alignment:
Q  414 ttgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||||||||| | | ||||||||||||||||||||||||| |||||||| |||||||||    
T  36575017 ttgatccagggacatgtttgatagcgaggtacactttcagggacccaaatgaaagtttactc 36574956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 359 - 475
Target Start/End: Complemental strand, 35062680 - 35062564
Alignment:
Q  359 tttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatc 458  Q
    |||||||||| ||||||||||||| | ||||||||||||||||| ||| |||| |||||| |||||| ||   ||||| ||||||  ||||| ||| | |    
T  35062680 tttggacgtggatgactaacggaacaaacattgggggagtttttggttagtttaattgattcagggatgtggttgataacgaggtgaacttttaggaacc 35062581  T
Q  459 caaatgagagtttactc 475  Q
    |||||||  ||||||||    
T  35062580 caaatgaaggtttactc 35062564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 475
Target Start/End: Original strand, 35063596 - 35063683
Alignment:
Q  388 attgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||||||||||| |||||||||||||||| || || ||  ||||||| |||  |||||||||| || ||||||||| ||||||||    
T  35063596 attgggggagtttttggttcgtttcattgatctagagatgtgcctgatagtgagcaacactttcagagacccaaatgagggtttactc 35063683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 475
Target Start/End: Complemental strand, 26530563 - 26530502
Alignment:
Q  414 ttgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||||||||| | | ||||||||||||||||||||||||| ||||||||  ||||||||    
T  26530563 ttgatccagggacatgtttgatagcgaggtacactttcagggacccaaatgaaggtttactc 26530502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 17332769 - 17332879
Alignment:
Q  162 tgagttgtgttggagaagaagaaggaattagaggtgttggagaagatgaaggtagtaacataattatggtcattttggtccctctcgcctacatggacat 261  Q
    ||||| |||||||||||||  |  ||||| |||||||||||||||| |||||  |||| |||||| |||| ||||||||||  ||||||||||| ||||     
T  17332769 tgagtagtgttggagaagataatagaattggaggtgttggagaagaagaaggccgtaa-ataattgtggtaattttggtcc--ctcgcctacattgacac 17332865  T
Q  262 ccatcaatttagtc 275  Q
    | | ||||||||||    
T  17332866 caaacaatttagtc 17332879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 475
Target Start/End: Complemental strand, 49917470 - 49917389
Alignment:
Q  393 gggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||||||||||| ||  ||||||||| ||| ||  || |||||||| || |||||||| || ||||||||||||||||||    
T  49917470 gggagtttttagttcattaaattgatccaaggatgtgact-atagcgagctatactttcagagacccaaatgagagtttactc 49917389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 16728147 - 16728009
Alignment:
Q  108 gttatctgtataaatatgaaaaattatgggtaaagatgttggagaatatgagttt--gagttgtgttggagaagaagaaggaattagaggtgttggagaa 205  Q
    ||||| ||||| ||||||||||||| | || | |||||||||| || ||||||||  ||||||||||||||||||||||| |||| ||||||||||||||    
T  16728147 gttatttgtatgaatatgaaaaattctaggcagagatgttggacaaaatgagtttatgagttgtgttggagaagaagaagtaattggaggtgttggagaa 16728048  T
Q  206 gatgaaggtagtaacataattatggtcattttggtccct 244  Q
    |||||||  |  ||||||||| |||||||||||||||||    
T  16728047 gatgaagacaagaacataattctggtcattttggtccct 16728009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 282 - 474
Target Start/End: Complemental strand, 16728005 - 16727813
Alignment:
Q  282 ctacgtggaaggccaatacagcaactgaagtggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacgga 381  Q
    |||||||||| |||| || | || ||||||||||| || || ||| || || ||||| ||||||  | |||||| | |||||| |    |||||||||||    
T  16728005 ctacgtggaaagccagtataacagctgaagtggcatgtgtaacggacacatcagcaccgttaacatcaagttaatgttttggatgcatttgactaacgga 16727906  T
Q  382 aaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttact 474  Q
    | |||||||| || ||||||||||||||||  ||||| |||| ||||  ||||||||||||||||||||||| || ||||||||| |||||||    
T  16727905 acagacattgaggaagtttttagttcgttttcttgattcaggaacgtggctgatagcgaggtacactttcagcgacccaaatgagggtttact 16727813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 387 - 476
Target Start/End: Complemental strand, 38921543 - 38921454
Alignment:
Q  387 cattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactca 476  Q
    |||||||||||||||| |||| ||||||||||| ||||| ||  ||||||| |||  ||||||||||||| ||||||||| |||||||||    
T  38921543 cattgggggagtttttggttcatttcattgatctagggatgtgcctgatagtgagcaacactttcagggacccaaatgagggtttactca 38921454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 472
Target Start/End: Complemental strand, 35967464 - 35967351
Alignment:
Q  359 tttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatc 458  Q
    ||||||||||  |||||||||||| | ||||||||||||||||| ||| |||| |||||| |  ||| ||  |||||| ||| ||  |||||||||||||    
T  35967464 tttggacgtggttgactaacggaacaaacattgggggagtttttggttagtttaattgattcgaggatgtggctgataacgatgtgaactttcagggatc 35967365  T
Q  459 caaatgagagttta 472  Q
    |||||||| |||||    
T  35967364 caaatgagggttta 35967351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 388 - 475
Target Start/End: Original strand, 35968670 - 35968757
Alignment:
Q  388 attgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||||||||||| |||||||||||||||| | | | ||  ||||||||||   |||||||||||||||||| | || ||||||||    
T  35968670 attgggggagtttttggttcgtttcattgatctatgaatgtgcctgatagcgaacaacactttcagggatccaattaagggtttactc 35968757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 312 - 475
Target Start/End: Complemental strand, 5005871 - 5005708
Alignment:
Q  312 tggcaagtctagcggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgttt 411  Q
    ||||||| | |||| |||||| ||||  |||||||| ||||||||| ||||||   ||||||||||||||| | || || | |||||||||  | |||||    
T  5005871 tggcaagaccagcgtccagatcagcagtgttaacgctcagttaacgttttggatcggaatgactaacggaagacactttcgaggagttttttttgcgttt 5005772  T
Q  412 cattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
      ||||| |||||||||   ||||||||||||||||||||||||| ||||||||| ||||||||    
T  5005771 tcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 5005708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 325 - 476
Target Start/End: Original strand, 5014735 - 5014886
Alignment:
Q  325 ggccagattagcacagttaacgcccagttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccaggg 424  Q
    |||||||| ||||  |||||||| ||||||||| ||||||   ||||||||||||||| | || || | |||||||||  | |||||  ||||| || ||    
T  5014735 ggccagatcagcagtgttaacgctcagttaacgttttggatcggaatgactaacggaagacactttcgaggagttttttttgcgttttcttgattcaagg 5014834  T
Q  425 acgtatctgatagcgaggtacactttcagggatccaaatgagagtttactca 476  Q
    ||||   ||||||||||||||||||||||||| ||||||||| |||||||||    
T  5014835 acgtggttgatagcgaggtacactttcagggacccaaatgagggtttactca 5014886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 352 - 474
Target Start/End: Original strand, 3872224 - 3872346
Alignment:
Q  352 ttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttc 451  Q
    |||||| ||||||||  | |||||||||||| |  ||||| | |||||||| |||||||| |||||| |||||||||  ||||||||||||| |||||||    
T  3872224 ttaacgttttggacgaaattgactaacggaataaccattgagagagtttttggttcgtttaattgatacagggacgtggctgatagcgaggtgcactttc 3872323  T
Q  452 agggatccaaatgagagtttact 474  Q
    ||||| ||||| ||| |||||||    
T  3872324 agggacccaaacgagggtttact 3872346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 371 - 476
Target Start/End: Complemental strand, 17863570 - 17863465
Alignment:
Q  371 tgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtt 470  Q
    ||||| |||||| | ||||||| ||||||||| |||  ||| ||||||||| ||| ||  ||||||||||||| |||||||||||| ||||||||| |||    
T  17863570 tgactgacggaacatacattggaggagtttttggtttatttaattgatccaaggatgtggctgatagcgaggtgcactttcagggacccaaatgagggtt 17863471  T
Q  471 tactca 476  Q
    ||||||    
T  17863470 tactca 17863465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 475
Target Start/End: Original strand, 12887725 - 12887786
Alignment:
Q  414 ttgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||||||||  | |||||| |||||||||||||||||||| ||||||||| ||||||||    
T  12887725 ttgatccagggatatgtctgatcgcgaggtacactttcagggacccaaatgagggtttactc 12887786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 390 - 475
Target Start/End: Complemental strand, 37241113 - 37241028
Alignment:
Q  390 tgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||||||||| || ||||||||||||||| | ||||  ||||||||||| |||||||||||| | ||||| |||  |||||||    
T  37241113 tgggggagtttttggtgcgtttcattgatccaagaacgtgactgatagcgagatacactttcaggaacccaaacgaggatttactc 37241028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 475
Target Start/End: Original strand, 17864672 - 17864776
Alignment:
Q  371 tgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtt 470  Q
    ||||||||  || |||||||| ||||||| || ||||||||  ||||||| |||| ||  ||||||||||| | |||||||| ||| ||||||||| |||    
T  17864672 tgactaacaaaatagacattgagggagttcttggttcgtttatttgatccggggatgtggctgatagcgagatgcactttcaaggaaccaaatgagggtt 17864771  T
Q  471 tactc 475  Q
    |||||    
T  17864772 tactc 17864776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 352 - 475
Target Start/End: Complemental strand, 3870891 - 3870768
Alignment:
Q  352 ttaacgctttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttc 451  Q
    |||||| ||||||||  | |||||||||||| |   |||||||||||||||  |||| || ||||||| ||||||||  ||||||||||  | || ||||    
T  3870891 ttaacgttttggacgaaattgactaacggaacaactattgggggagtttttgattcgcttaattgatctagggacgtggctgatagcgaaatgcattttc 3870792  T
Q  452 agggatccaaatgagagtttactc 475  Q
    ||||| |||| |||| ||||||||    
T  3870791 agggacccaagtgagggtttactc 3870768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 475
Target Start/End: Original strand, 32565606 - 32565695
Alignment:
Q  386 acattgggggagtttttagttcgtttcattgatccagggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    |||||||||||||||||  ||| ||  ||||||| ||||||   ||||||||||||| ||||||||||||| | ||| ||| ||||||||    
T  32565606 acattgggggagtttttgattcattaaattgatcgagggactggtctgatagcgagggacactttcagggacctaaacgagggtttactc 32565695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 475
Target Start/End: Original strand, 12888252 - 12888305
Alignment:
Q  422 gggacgtatctgatagcgaggtacactttcagggatccaaatgagagtttactc 475  Q
    ||||||| ||||||||||||||||| |||||||||  ||||||||  |||||||    
T  12888252 gggacgtgtctgatagcgaggtacaatttcagggactcaaatgaggatttactc 12888305  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 437 - 477
Target Start/End: Complemental strand, 12887062 - 12887022
Alignment:
Q  437 gcgaggtacactttcagggatccaaatgagagtttactcaa 477  Q
    |||| |||||||||||||| | |||||||||||||||||||    
T  12887062 gcgaagtacactttcagggtttcaaatgagagtttactcaa 12887022  T

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