View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_low_70 (Length: 224)

Name: NF11977_low_70
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_low_70
NF11977_low_70
[»] chr2 (3 HSPs)
chr2 (1-207)||(44909752-44909973)
chr2 (47-123)||(14106064-14106140)
chr2 (46-121)||(43822042-43822117)
[»] chr6 (7 HSPs)
chr6 (43-121)||(24977771-24977849)
chr6 (43-121)||(24976340-24976418)
chr6 (48-121)||(12770773-12770846)
chr6 (48-119)||(12766760-12766831)
chr6 (46-119)||(3894855-3894928)
chr6 (46-121)||(12800105-12800180)
chr6 (48-102)||(12777047-12777101)
[»] chr3 (7 HSPs)
chr3 (43-119)||(16724876-16724952)
chr3 (48-123)||(24835069-24835144)
chr3 (46-119)||(18177746-18177819)
chr3 (48-121)||(20204893-20204966)
chr3 (48-125)||(22261736-22261813)
chr3 (48-125)||(22266686-22266763)
chr3 (52-119)||(35269852-35269919)
[»] chr1 (5 HSPs)
chr1 (46-122)||(9826454-9826530)
chr1 (46-121)||(31279278-31279353)
chr1 (46-119)||(4449635-4449708)
chr1 (47-122)||(9812058-9812133)
chr1 (46-122)||(9751435-9751510)
[»] chr5 (1 HSPs)
chr5 (46-121)||(40235003-40235078)
[»] chr4 (2 HSPs)
chr4 (46-121)||(39936153-39936228)
chr4 (47-120)||(28745642-28745715)
[»] scaffold0432 (1 HSPs)
scaffold0432 (46-122)||(5820-5896)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 44909752 - 44909973
Alignment:
Q  1 aaagcgtttaggtatttgtaatatttatttggatacagaaataacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctgga 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44909752 aaagcgtttaggtatttgtaatatttatttggatacaaaaataacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctgga 44909851  T
Q  101 tcgaaaccaggctctgataaattctttctt---------------ttccttatatattttgggtctgttattggcattttactgcataatcagcttcgtt 185  Q
    |||||||||||||||||||||||||| |||               || |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44909852 tcgaaaccaggctctgataaattcttcctttttctttctaccatctttcttatatattttgggtctgttactggcattttactgcataatcagcttcgtt 44909951  T
Q  186 tttagcatttcgcatgatattt 207  Q
    ||||||||||||||||||||||    
T  44909952 tttagcatttcgcatgatattt 44909973  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 14106140 - 14106064
Alignment:
Q  47 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaatt 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14106140 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaatt 14106064  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 43822042 - 43822117
Alignment:
Q  46 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43822042 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 43822117  T

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Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 24977849 - 24977771
Alignment:
Q  43 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24977849 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 24977771  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 24976418 - 24976340
Alignment:
Q  43 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24976418 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgataaa 24976340  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 12770846 - 12770773
Alignment:
Q  48 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12770846 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggattgaaaccaggctctgataaa 12770773  T

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Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 12766831 - 12766760
Alignment:
Q  48 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 119  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12766831 atcagagtggcgcagcggaagcatggtgggcccataacccataggtccctggatcgaaaccaggctctgata 12766760  T

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Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 3894928 - 3894855
Alignment:
Q  46 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  3894928 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccttggatagaaaccagactctgata 3894855  T

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Target: chr6; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 12800180 - 12800105
Alignment:
Q  46 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 121  Q
    |||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  12800180 aaatcagagtggtgcggcggaagcgtggtgggcccataacctacaggtccctggatcgaaaccaggctctaataaa 12800105  T

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Target: chr6; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 12777101 - 12777047
Alignment:
Q  48 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12777101 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatc 12777047  T

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Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 16724952 - 16724876
Alignment:
Q  43 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16724952 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 16724876  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 24835144 - 24835069
Alignment:
Q  48 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24835144 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaatt 24835069  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 18177819 - 18177746
Alignment:
Q  46 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18177819 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 18177746  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 20204893 - 20204966
Alignment:
Q  48 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20204893 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 20204966  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 22261736 - 22261813
Alignment:
Q  48 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaattct 125  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  22261736 atcaaagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgataagttct 22261813  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 22266763 - 22266686
Alignment:
Q  48 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaattct 125  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  22266763 atcaaagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgataagttct 22266686  T

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Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 35269919 - 35269852
Alignment:
Q  52 gagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35269919 gagtggcacagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 35269852  T

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Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 9826530 - 9826454
Alignment:
Q  46 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9826530 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 9826454  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 31279353 - 31279278
Alignment:
Q  46 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279353 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 31279278  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 4449708 - 4449635
Alignment:
Q  46 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4449708 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 4449635  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 9812133 - 9812058
Alignment:
Q  47 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 122  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  9812133 aatcagagtggcgcagcggaagcgtggtgggcccataacccataggtccctggattaaaaccaggctctgataaat 9812058  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 9751510 - 9751435
Alignment:
Q  46 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 122  Q
    |||| |||||||||||| |||||||||||||| | ||||| ||||| |||||||||||||| ||| |||| ||||||    
T  9751510 aaattagagtggcgcag-ggaagcgtggtgggtctataactcacagatccctggatcgaaatcagactctaataaat 9751435  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 40235078 - 40235003
Alignment:
Q  46 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40235078 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 40235003  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 39936153 - 39936228
Alignment:
Q  46 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39936153 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 39936228  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 28745715 - 28745642
Alignment:
Q  47 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28745715 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataa 28745642  T

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Target: scaffold0432 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 5896 - 5820
Alignment:
Q  46 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 122  Q
    ||||||||||| |||||||||||||||||||| |||||||||| |||| ||||||||||||| ||||||| ||||||    
T  5896 aaatcagagtgacgcagcggaagcgtggtgggtccataacccataggttcctggatcgaaactaggctctaataaat 5820  T

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