View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_low_75 (Length: 203)

Name: NF11977_low_75
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_low_75
NF11977_low_75
[»] chr3 (15 HSPs)
chr3 (20-201)||(772142-772323)
chr3 (22-188)||(2455102-2455268)
chr3 (35-110)||(12217290-12217365)
chr3 (35-110)||(7428315-7428390)
chr3 (32-136)||(37758423-37758527)
chr3 (20-163)||(7334926-7335069)
chr3 (20-157)||(7443655-7443792)
chr3 (20-103)||(7325112-7325195)
chr3 (20-134)||(2491348-2491462)
chr3 (20-137)||(2501420-2501537)
chr3 (46-134)||(9566506-9566594)
chr3 (32-136)||(13497460-13497564)
chr3 (55-177)||(2474413-2474535)
chr3 (32-134)||(9562647-9562749)
chr3 (82-123)||(988700-988741)
[»] chr6 (1 HSPs)
chr6 (20-190)||(24418098-24418268)
[»] chr7 (1 HSPs)
chr7 (20-124)||(27754890-27754994)
[»] scaffold0760 (1 HSPs)
scaffold0760 (59-190)||(3931-4062)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 772323 - 772142
Alignment:
Q  20 agattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  772323 agattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaatactctaatatctgatcccaaatttgctaaaaagca 772224  T
Q  120 ccttcaaatgtcaaccaaacgtaaccgcctaatggtaagatctaccaacaacttaggtaagttatttctctctgcttctcca 201  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||    
T  772223 ccttcaaatgtcaaccaaacgtaaccgcctaatgttaagatctaccaacaacttaggtaagttatttctctatgattctcca 772142  T

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Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 2455102 - 2455268
Alignment:
Q  22 attctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagcacc 121  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  2455102 attctgtgccggcttcctgtgaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctcttatatctgatcccaaatttgctaaaaagcacc 2455201  T
Q  122 ttcaaatgtcaaccaaacgtaaccgcctaatggtaagatctaccaacaacttaggtaagttatttct 188  Q
    ||||||||||||||  |||  ||| ||||||| ||||||||||||||||||||||||||||||||||    
T  2455202 ttcaaatgtcaaccgcacgccaccacctaatgttaagatctaccaacaacttaggtaagttatttct 2455268  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 12217290 - 12217365
Alignment:
Q  35 ttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgc 110  Q
    |||| |||||||||||| | ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  12217290 ttccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaattctttaatctctgatcccaaatttgc 12217365  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 7428390 - 7428315
Alignment:
Q  35 ttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgc 110  Q
    |||| |||||||||||| | ||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||    
T  7428390 ttccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaattctttaatctctgatcccaaatttgc 7428315  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 37758527 - 37758423
Alignment:
Q  32 ggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagcaccttcaaatgtc 131  Q
    |||||||||| ||||||||| | || || || ||||||||||||||||| ||||||||||| |  ||||||||||| ||||| ||||| ||||  |||||    
T  37758527 ggcttcctgtcaagttactcttacaactccgatgcctctgcaagtccttgaattctttaatcttggatcccaaattcgctaagaagcatcttcgtatgtc 37758428  T
Q  132 aacca 136  Q
    |||||    
T  37758427 aacca 37758423  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 7335069 - 7334926
Alignment:
Q  20 agattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagca 119  Q
    ||||||||||  ||||||| || || |||||||| |||||||| || ||||| |||| |||||||||| | || |||||||| ||||| || || |||||    
T  7335069 agattctgtgtaggcttccggtgaaattactcgtacagcttcgatgtctctgtaagttctttaattctgttatctctgatccaaaattcgcaaagaagca 7334970  T
Q  120 ccttcaaatgtcaaccaaacgtaaccgcctaatggtaagatcta 163  Q
    ||||||| ||||||| || ||  ||| ||| ||||||| |||||    
T  7334969 ccttcaattgtcaacaaagcgccaccacctcatggtaacatcta 7334926  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 7443792 - 7443655
Alignment:
Q  20 agattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagca 119  Q
    ||||||| ||| |||||||||| || |||||| | || ||||| |||||||| |||| ||| ||||||||||| ||||||||||| || || || |||||    
T  7443792 agattctctgcaggcttcctgtgaaattactcatacaacttcggtgcctctgtaagttcttcaattctttaatttctgatcccaatttcgccaagaagca 7443693  T
Q  120 ccttcaaatgtcaaccaaacgtaaccgcctaatggtaa 157  Q
    | ||||| | ||| |||| | | ||||||| |||||||    
T  7443692 ctttcaattttcagccaagcatcaccgcctcatggtaa 7443655  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 7325195 - 7325112
Alignment:
Q  20 agattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatccca 103  Q
    ||||||| ||| |||||||||| || |||||| | |||||||| |||||||| |||| ||| ||||||||||| ||||||||||    
T  7325195 agattctctgcaggcttcctgtgaaattactcatacagcttcggtgcctctgtaagttcttcaattctttaatttctgatccca 7325112  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 2491348 - 2491462
Alignment:
Q  20 agattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagca 119  Q
    ||||||||||  ||||||| || || ||||| || |||||||| ||||| || ||||  || ||||||||||| |||||||| ||||| || ||||||||    
T  2491348 agattctgtgtaggcttccggtgaaattactggtacagcttcgatgcctttgtaagtttttcaattctttaatttctgatcctaaattcgcaaaaaagca 2491447  T
Q  120 ccttcaaatgtcaac 134  Q
     |||||| |||||||    
T  2491448 tcttcaattgtcaac 2491462  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 2501420 - 2501537
Alignment:
Q  20 agattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagca 119  Q
    ||||||||||| ||||||| || || ||||| || |||||||| ||||| || |||| ||| ||||||||||| |||||||| ||||| || || || ||    
T  2501420 agattctgtgcaggcttccggtgaaattactagtacagcttcgatgcctttgtaagttcttcaattctttaatttctgatcctaaattcgcaaagaaaca 2501519  T
Q  120 ccttcaaatgtcaaccaa 137  Q
     ||||  |||||||||||    
T  2501520 tcttcgtatgtcaaccaa 2501537  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 9566594 - 9566506
Alignment:
Q  46 ttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagcaccttcaaatgtcaac 134  Q
    |||||||  |||||||| ||||||||||||||||| |||||| | || |||||||| ||||| || ||||| || |||||| |||||||    
T  9566594 ttactcggacagcttcggtgcctctgcaagtccttcaattctcttatttctgatccaaaattcgcaaaaaaacatcttcaattgtcaac 9566506  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 13497460 - 13497564
Alignment:
Q  32 ggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagcaccttcaaatgtc 131  Q
    ||||||| || |||||||| || || ||||| |||||||||||||  ||||||||||| || ||||||||  |||| || || |||||||||||  ||||    
T  13497460 ggcttccggtgaagttacttgtacaacttcgatgcctctgcaagttttttaattctttgatctctgatcctgaattcgcaaagaagcaccttcatttgtc 13497559  T
Q  132 aacca 136  Q
    |||||    
T  13497560 aacca 13497564  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 177
Target Start/End: Original strand, 2474413 - 2474535
Alignment:
Q  55 cagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagcaccttcaaatgtcaaccaaacgtaaccgcctaatgg 154  Q
    |||||||| |||||||| |||| ||||||||||||||| ||  |||||| ||| || || || ||||||||| | |||| ||| ||  ||| ||| ||||    
T  2474413 cagcttcggtgcctctgtaagttctttaattctttaatttccaatcccagattcgcaaagaaacaccttcaattatcaaacaagcgccaccacctcatgg 2474512  T
Q  155 taagatctaccaacaacttaggt 177  Q
    ||| ||||| |||| ||||||||    
T  2474513 taacatctagcaactacttaggt 2474535  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 9562749 - 9562647
Alignment:
Q  32 ggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagcaccttcaaatgtc 131  Q
    ||||||| || || ||||| || |||||||| || || ||  ||| ||| ||||||||||| ||  ||||||||||||| || |||||||||||| ||||    
T  9562749 ggcttccggtgaaattacttgtacagcttcgatgtctgtgtgagttcttcaattctttaatttccaatcccaaatttgcaaagaagcaccttcaattgtc 9562650  T
Q  132 aac 134  Q
    |||    
T  9562649 aac 9562647  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 988700 - 988741
Alignment:
Q  82 aattctttaatatctgatcccaaatttgctaaaaagcacctt 123  Q
    ||||||||||| |||||||||||||| || ||||||||||||    
T  988700 aattctttaatctctgatcccaaattcgcaaaaaagcacctt 988741  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 24418268 - 24418098
Alignment:
Q  20 agattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagca 119  Q
    ||||||||||  ||||||| || ||||||||| | || |||||||| |||||||||||||| ||||| ||||| |||||||||||||| || || |||||    
T  24418268 agattctgtgtaggcttcccgtgaagttactccttcaacttcgctgtctctgcaagtccttcaattcattaatctctgatcccaaattcgcaaacaagca 24418169  T
Q  120 ccttcaaatgtcaaccaaacgtaaccgcctaatggtaagatctaccaacaacttaggtaagttatttctct 190  Q
    |||||   |||||||||  ||  | ||||| ||| |||  ||||||||| |||||||| | ||| ||||||    
T  24418168 ccttcgcttgtcaaccaggcgccatcgcctcatgttaatgtctaccaacgacttaggtcacttagttctct 24418098  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 27754890 - 27754994
Alignment:
Q  20 agattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagca 119  Q
    |||||||||||  |||||| || ||||||||  | || ||| | |||||||| |||||||||||||||||||| || ||||| |||||||| || || ||    
T  27754890 agattctgtgcatgcttcccgtgaagttactacttcaactttgatgcctctgtaagtcctttaattctttaatctccgatccaaaatttgccaagaaaca 27754989  T
Q  120 ccttc 124  Q
    |||||    
T  27754990 ccttc 27754994  T

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Target: scaffold0760 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 190
Target Start/End: Original strand, 3931 - 4062
Alignment:
Q  59 ttcgctgcctctgcaagtcctttaattctttaatatctgatcccaaatttgctaaaaagcaccttcaaatgtcaaccaaacgtaaccgcctaatggtaag 158  Q
    |||||||| |||||||||| || || || ||||| |||||||  ||||| | ||| |||||||||||  ||||||| || ||  ||| |||  |||||||    
T  3931 ttcgctgcgtctgcaagtctttcaaatccttaatttctgatcataaattcggtaagaagcaccttcagttgtcaacaaagcgccaccacctcttggtaag 4030  T
Q  159 atctaccaacaacttaggtaagttatttctct 190  Q
      ||||||||||||||||  ||||| ||||||    
T  4031 cactaccaacaacttaggcgagttacttctct 4062  T

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