View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_low_8 (Length: 654)

Name: NF11977_low_8
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_low_8
NF11977_low_8
[»] chr2 (1 HSPs)
chr2 (1-640)||(39789530-39790166)


Alignment Details
Target: chr2 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Original strand, 39789530 - 39790166
Alignment:
Q  1 atgcagctacgtaagttaaccaatttcaatgtgacannnnnnncttaggtaatgtcacacccattataaatgagttaaataaaagatataacttaaatgt 100  Q
    ||||||||||||||||||||||||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39789530 atgcagctacgtaagttaaccaatttcaacgtgacatatttttcttaggtaatgtcacacccattataaatgagttaaataaaagatataacttaaatgt 39789629  T
Q  101 gcaatgccttacaatattgagtaaaaaatgcaatgtcaaagtcccttgtggcatttatcactctgatctagggcaagtgattggtgcgcagtgtgtgtag 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  39789630 gcaatgccttacaatattgagtaaaaa-tgcaatgtcaaagtcccttgtggcatttatcactctgatctagggcaagtgattggtgcgcagtgt--gtag 39789726  T
Q  201 ccaatgtaaatcacgcgacacacaatttctaatataaaaaagtcgtttgctgtaatcaaatcagcgttgaggtctaacacaagagattgatgtgcaagta 300  Q
    ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||| ||||||||    
T  39789727 ccattgtaaatcatgcgacacacaatttctaatataaaaaagtcgtttgctgtaattaaatcagcgttgaggtctaatgcaagagattgatatgcaagta 39789826  T
Q  301 tgatcatatttagttcaatttctattgataaaaagtgtcatgttgcacttgtatttaccatcaatgtttaacgtaagtggttgttgtgtaatgcgcgtga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||    
T  39789827 tgatcatatttagttcaatttctattgataaaaagtgtcatgttgcacttgcatttactatcaatgtttaacgtaagtggttgttgtgtaatgtgcgtga 39789926  T
Q  401 gtgttgtaaatcatggaataccgagattaatttatatatatnnnnnnnnnngttttctaattggttccgatatttagcacactgcagatgacggtgctac 500  Q
     |||||||||||||||||||||||||||||||| |||| |           |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39789927 ttgttgtaaatcatggaataccgagattaatttttataaaataaaaaagaagttttctaattggttccgatatttagcacactgcagatgacggtgctac 39790026  T
Q  501 caaactccccaacatatcatcatctttttcctataaattaaagccctctctccttttggcttctaaaaccaaccccacacacattacactcactctcaaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39790027 caaactccccaacatatcatcatctttttcctataaattaaagccctctctccttttggcttctaaaaccaaccccacacacactacactcactctcaaa 39790126  T
Q  601 ttctcaaacccctcttttgtacccataaaaacacccaaag 640  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39790127 ttctcaaacccctcttttgtacccataaaaacacccaaag 39790166  T

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