View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11977_low_9 (Length: 647)
Name: NF11977_low_9
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_9 |
 | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
|
| [»] scaffold0281 (1 HSPs) |
| | |
|
| [»] scaffold0437 (1 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0125 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 538; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 628
Target Start/End: Original strand, 41247884 - 41248501
Alignment:
| Q |
1 |
tcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaagaattcagt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41247884 |
tcaccttgtcagacaccacgagaacaagagaaaaaacccactgtcttaccattcaccaaaatagaaagcctggctgagtgcaaaatagcaagaattcagt |
41247983 |
T |
|
| Q |
101 |
cggtaaacatagaagaaaaaccaaacttccgaagcaccgcggccaaaaagttccaatccaacgtgttgaatgcttttttaatatcaactttcaaagccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41247984 |
cggtaaacatagaagaaaaaccaaacttccgaagcaccgcggccaaaa-gttccaatccaacgtgtt----------ttaatatcaactttcaaagccaa |
41248072 |
T |
|
| Q |
201 |
attgccaccaaactgccttt-gtcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctcc |
299 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248073 |
attgccaccaaactgccttttgtcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctcc |
41248172 |
T |
|
| Q |
300 |
ggagaaatgatgcgcatagtgataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctc |
399 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248173 |
ggagaaatgatgcgcatagtaataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctc |
41248272 |
T |
|
| Q |
400 |
ccataacctgcgcccctgtgatcttaggaataaggatcaacatatttgaattaatattaggtgggagaacaccagggagagtggtgtcaaattgaggttc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41248273 |
ccataacctgcgcccctgtgatcttaggaataaggaccaacatatttgaattaatattaggtgggagaacactagggagagtggtgtcaaattgaggtta |
41248372 |
T |
|
| Q |
500 |
cgtccatctctgtagcaaggccattgttgcaccttcaattatgtcaaattggcatatccatgatgacagtgagagtggtttaggataagattcaagtgca |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41248373 |
cgtccatctctgtagcaaggccattgttgcaccttcaattatgtcaaattggcatatccatgatgagagtgagagtggtttaggataagattcaagtgca |
41248472 |
T |
|
| Q |
600 |
atagcctaagaaagatacaaagctgtgtt |
628 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41248473 |
atagcctaagaaagatacaaagctgtgtt |
41248501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 335 - 430
Target Start/End: Complemental strand, 44377576 - 44377481
Alignment:
| Q |
335 |
gtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacctgcgcccctgtgatcttaggaat |
430 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||| || | ||| ||||| ||||| ||||||||| | || ||||||| || |||||||| |
|
|
| T |
44377576 |
gtcagccaaaatcttcgtcacaattttaaattgaaaattagctaaagcaataggtcggaaatctcccatagcttgggcccctggaattttaggaat |
44377481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 335 - 430
Target Start/End: Complemental strand, 44393156 - 44393061
Alignment:
| Q |
335 |
gtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacctgcgcccctgtgatcttaggaat |
430 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||| || | ||| ||||| ||||| ||||||||| | || ||||||| || |||||||| |
|
|
| T |
44393156 |
gtcagccaaaatcttcgtcacaattttaaattgaaaattagctaaagcaataggtcggaaatctcccatagcttgggcccctggaattttaggaat |
44393061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 44377908 - 44377826
Alignment:
| Q |
4 |
ccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaat |
86 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||||||| || || ||||||||||||||||| ||||| || ||||| ||||| |
|
|
| T |
44377908 |
ccttgacgaacaccacggacacaagagaagaaacccaccgctttgccattcaccaaaatagagagtcttgccgagtgtaaaat |
44377826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 44393488 - 44393406
Alignment:
| Q |
4 |
ccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaat |
86 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||||||| || || ||||||||||||||||| ||||| || ||||| ||||| |
|
|
| T |
44393488 |
ccttgacgaacaccacggacacaagagaagaaacccaccgctttgccattcaccaaaatagagagtcttgccgagtgtaaaat |
44393406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 32299771 - 32299716
Alignment:
| Q |
10 |
cgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaataga |
65 |
Q |
| |
|
||||| |||||||| |||| ||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
32299771 |
cgaaccccacgagagcaagcgaaaaaaccaaccgccttaccattaaccaaaataga |
32299716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 33236443 - 33236492
Alignment:
| Q |
16 |
ccacgagaacaagagaaaaaacccactgccttaccattcaccaaaataga |
65 |
Q |
| |
|
||||| |||||||||||||| || |||||||| ||||| ||||||||||| |
|
|
| T |
33236443 |
ccacgggaacaagagaaaaagccaactgccttgccattaaccaaaataga |
33236492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 10708433 - 10708905
Alignment:
| Q |
1 |
tcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaagaattcagt |
100 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
10708433 |
tcaccttgtcggacactacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctagctgagtgcaaaatagcaagaatccagt |
10708532 |
T |
|
| Q |
101 |
cggtaaacatagaagaaaaaccaaacttccgaagcaccgcggccaaaaagttccaatccaacgtgttgaatgcttttttaatatcaactttcaaagccac |
200 |
Q |
| |
|
||||||||| |||||||||||||||||| || |||||| | ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10708533 |
cggtaaacagagaagaaaaaccaaactttcggagcaccacaaccagaaagttccaatccaacgtattgaaggcttttttaatatcaactttcaaagccac |
10708632 |
T |
|
| Q |
201 |
attgccaccaaactgcctttg-tcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctcc |
299 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||| |||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
10708633 |
attgccaccaaactgccttttatcaatcatactaaccgcctttgatgcaataataatacaaaccgaaatattcctatcctgaataaacccctgttgctcc |
10708732 |
T |
|
| Q |
300 |
ggagaaatgatgcgcatagtgataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctc |
399 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10708733 |
gaagaaatgatgcgcatagtgataatagaaagtttgtcaactaaaattttcgaaacaattttaaattgaaaatttgcaagagctataggacggaagtccc |
10708832 |
T |
|
| Q |
400 |
ccataacctgcgcccctgtgatcttaggaataaggatcaacatatttgaattaatattaggtgggagaacacc |
472 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
10708833 |
ccatggcatgcgcccctgtgatcttaggaataaggaccagcatatttgaattaatattaggcgggagaacacc |
10708905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 10922203 - 10922675
Alignment:
| Q |
1 |
tcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaagaattcagt |
100 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
10922203 |
tcaccttgtcggacactacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctagctgagtgcaaaatagcaagaatccagt |
10922302 |
T |
|
| Q |
101 |
cggtaaacatagaagaaaaaccaaacttccgaagcaccgcggccaaaaagttccaatccaacgtgttgaatgcttttttaatatcaactttcaaagccac |
200 |
Q |
| |
|
||||||||| |||||||||||||||||| || |||||| | ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10922303 |
cggtaaacagagaagaaaaaccaaactttcggagcaccacaaccagaaagttccaatccaacgtattgaaggcttttttaatatcaactttcaaagccac |
10922402 |
T |
|
| Q |
201 |
attgccaccaaactgcctttg-tcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctcc |
299 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||| |||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
10922403 |
attgccaccaaactgccttttatcaatcatactaaccgcctttgatgcaataataatacaaaccgaaatattcctatcctgaataaacccctgttgctcc |
10922502 |
T |
|
| Q |
300 |
ggagaaatgatgcgcatagtgataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctc |
399 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10922503 |
gaagaaatgatgcgcatagtgataatagaaagtttgtcaactaaaattttcgaaacaattttaaattgaaaatttgcaagagctataggacggaagtccc |
10922602 |
T |
|
| Q |
400 |
ccataacctgcgcccctgtgatcttaggaataaggatcaacatatttgaattaatattaggtgggagaacacc |
472 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
10922603 |
ccatggcatgcgcccctgtgatcttaggaataaggaccagcatatttgaattaatattaggcgggagaacacc |
10922675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 20382727 - 20382629
Alignment:
| Q |
333 |
ctgtcagctaaaattttcgtaacaattttaaattg-aaaatttgcaagagctataggacggaagtctcccataacctgcgcccctgtgatcttaggaat |
430 |
Q |
| |
|
||||| |||||| |||| |||||||||||||| || ||||| || ||||||||| ||| |||||| |||||| |||| |||| ||||| ||||||||| |
|
|
| T |
20382727 |
ctgtctgctaaagttttagtaacaattttaaactgaaaaatccgctagagctataagacagaagtcacccatagcctgggcccgtgtgaccttaggaat |
20382629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 153; Significance: 9e-81; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 125776 - 125393
Alignment:
| Q |
16 |
ccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaagaattcagtcggtaaacatagaag |
115 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||||| |||||||||||||||||| || |||||||||||||||||||| || |||| ||||||| ||| |
|
|
| T |
125776 |
ccacaagaacaagtaaaaaatcccaccgccttacgattcaccaaaatagaaagcctagctgagtgcaaaatagcaaggatccagttcgtaaacaccaaag |
125677 |
T |
|
| Q |
116 |
aaaaaccaaacttccgaagcaccgcggccaaaaagttccaatccaacgtgttgaatgcttttttaatatcaactttcaaagccacattgccaccaaactg |
215 |
Q |
| |
|
||||||| || || |||| ||| ||||||| |||||||| ||||||| ||| | |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
125676 |
aaaaaccgaatttttttagcatcgcaaccaaaaaattccaatctaacgtgtcaaatacctttttaatatcaaccttcaaagccacattgccaccaaactg |
125577 |
T |
|
| Q |
216 |
cctttg-tcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctccggagaaatgatgcgc |
314 |
Q |
| |
|
||||| |||||| ||||||| ||| |||||| | ||||||||| |||| ||||| |||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
125576 |
ccttttatcaatcctattaacgacctttgatgcaagaataatacatcccgatatattcctatcatgaataaaagcccgttgctccggagaaatgatgcgc |
125477 |
T |
|
| Q |
315 |
atagtgataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccat |
403 |
Q |
| |
|
|||| ||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
125476 |
atag-----atagagagcctgtcagctaatatcttcgtaacaattttaaattgaaaatttgcaagagcaatagggcgaaagtctcccat |
125393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 150; Significance: 6e-79; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 7 - 427
Target Start/End: Original strand, 43659 - 44080
Alignment:
| Q |
7 |
tgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaagaattcagtcggtaa |
106 |
Q |
| |
|
||||| || |||||||||||| ||| || ||||||||||||||||||||||| ||||| || | ||||| | || ||||||||||| ||||| |||| |
|
|
| T |
43659 |
tgtcggactccacgagaacaattgaagaatcccactgccttaccattcaccaagatagagagccgagctgaatataagatagcaagaatccagtcagtaa |
43758 |
T |
|
| Q |
107 |
acatagaagaaaaaccaaacttccgaagcaccgcggccaaaaagttccaatccaacgtgttgaatgcttttttaatatcaactttcaaagccacattgcc |
206 |
Q |
| |
|
||| | || |||||||| || | |||||||| ||| || || ||||||||||| || || ||||||||||| |||| ||| ||||||||||| |
|
|
| T |
43759 |
acaaatgtgagaaaccaaattttctgagcaccgctatcaagaaatttcaatccaacgtaacaaaggcctttttaatatcgacttacaatgccacattgcc |
43858 |
T |
|
| Q |
207 |
accaaactgcc-tttgtcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctccggagaa |
305 |
Q |
| |
|
||||||| | ||| ||||||| ||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43859 |
gtcaaactgtcatttatcaatcaaattaatggcctctgatgcaagaataatacactccgaaatatttctatcacgaataaacccccgctgctccggagaa |
43958 |
T |
|
| Q |
306 |
atgatgcgcatagtgataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataa |
405 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||| || |||||||||||||||||||||||||| ||||| | |
|
|
| T |
43959 |
ataatgcgcatagcaataatagaaagtctgtcagctaagatttttgtgacaattttaaattggaagtttgcaagagctataggacggaagtcccccatga |
44058 |
T |
|
| Q |
406 |
cctgcgcccctgtgatcttagg |
427 |
Q |
| |
|
||| ||| ||| ||| |||||| |
|
|
| T |
44059 |
cctacgctcctttgaccttagg |
44080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 21490237 - 21490691
Alignment:
| Q |
19 |
cgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaagaattcagtcggtaaacatagaagaaa |
118 |
Q |
| |
|
||||||||| ||| || ||||||||||||||||||||||| || || || | ||||| || || |||||||| || ||||| ||||||| | || | |
|
|
| T |
21490237 |
cgagaacaattgaagaatcccactgccttaccattcaccaagatggagagccgagctgaatgtaagatagcaagtatccagtcagtaaacaaatgtgaga |
21490336 |
T |
|
| Q |
119 |
aaccaaacttccgaagcaccgcggccaaaaagttccaatccaacgtgttgaatgcttttttaatatcaactttcaaagccacattgccaccaaactgcc- |
217 |
Q |
| |
|
||||||| || | |||||||| ||| || ||||||||||| || | || || ||||||||||| ||||| || ||||||||||| ||||||| | |
|
|
| T |
21490337 |
aaccaaattttctgagcaccgctatcaagaaattccaatccaatgtatcaaaggcctttttaatatcgacttttaatgccacattgccgccaaactatcg |
21490436 |
T |
|
| Q |
218 |
tttgtcaatcatattaaccgcctctgatgccataataatacaatccgaaatatttctatcacgaataaacccccgttgctccggagaaatgatgcgcata |
317 |
Q |
| |
|
||| ||||||| ||||| ||||| ||||| ||||||||||| |||||||||||||||||| |||||||||| || ||||||||||||| | |||||| |
|
|
| T |
21490437 |
tttatcaatcaaattaatggcctccgatgcaataataatacactccgaaatatttctatcatgaataaacccgcgctgctccggagaaacaacacgcata |
21490536 |
T |
|
| Q |
318 |
gtgataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacctgcgcccctg |
417 |
Q |
| |
|
| |||||||| |||||||||||||||||||| || |||||||||||||| || || ||||||||||||||||| ||||| ||||| |||||||| |||| |
|
|
| T |
21490537 |
gcaataatagagagtctgtcagctaaaatttttgtgacaattttaaattggaagttagcaagagctataggacgaaagtcccccatgacctgcgctcctg |
21490636 |
T |
|
| Q |
418 |
tgatcttaggaataaggatcaacatatttgaattaatattaggtgggagaacacc |
472 |
Q |
| |
|
||| |||||| | || | | |||||| || ||||||||||| |||||| |||| |
|
|
| T |
21490637 |
tgaccttagggagaaaaacaagcatattagagttaatattaggcgggagagcacc |
21490691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 41346571 - 41346631
Alignment:
| Q |
344 |
aattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccata |
404 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||| ||| ||||||||| ||||||||||| |
|
|
| T |
41346571 |
aattttagtaataattttaaattgaaagtttgcagcagcgataggacggtagtctcccata |
41346631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 21810845 - 21810796
Alignment:
| Q |
16 |
ccacgagaacaagagaaaaaacccactgccttaccattcaccaaaataga |
65 |
Q |
| |
|
||||| || ||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
21810845 |
ccacgggagcaagaaaaaaaaccaactgcctttccattcaccaaaataga |
21810796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 327 - 417
Target Start/End: Original strand, 31349183 - 31349273
Alignment:
| Q |
327 |
gaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacctgcgcccctg |
417 |
Q |
| |
|
|||| |||||||||||||||||| || | ||||||||| |||||||||| | ||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
31349183 |
gaaaatctgtcagctaaaatttttgtgataattttaaactgaaaatttgtcaaagctataggtcggaaatcacccataacctgcgcccctg |
31349273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 15157229 - 15157168
Alignment:
| Q |
4 |
ccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaataga |
65 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
15157229 |
ccttgtcgaacaccacaagaacaagagaaaaaacccaccgcttttgcattcaccaaaataga |
15157168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 15144248 - 15144285
Alignment:
| Q |
4 |
ccttgtcgaacaccacgagaacaagagaaaaaacccac |
41 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
15144248 |
ccttgtcgaacaccacgagagcaagagaaaaatcccac |
15144285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 16224589 - 16224540
Alignment:
| Q |
342 |
aaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacg |
391 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
16224589 |
aaaatcttcgcaacaattttaaattgaaaatttgcgagagaaataggacg |
16224540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 22833997 - 22834049
Alignment:
| Q |
321 |
ataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatt |
373 |
Q |
| |
|
||||||| ||||||||||| ||||| || |||| |||||||||||||||||| |
|
|
| T |
22833997 |
ataatagccagtctgtcagccaaaatcttagtaataattttaaattgaaaatt |
22834049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 12161218 - 12161157
Alignment:
| Q |
4 |
ccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaataga |
65 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
12161218 |
ccttgtcgaacaccacaagaacaagagaaaaaacccaccgcttttgcattcaccaaaataga |
12161157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 7664850 - 7664808
Alignment:
| Q |
334 |
tgtcagctaaaattttcgtaacaattttaaattgaaaatttgc |
376 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7664850 |
tgtcagctaaaattttagtaacaattttaaactgaaaatttgc |
7664808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 13710 - 13658
Alignment:
| Q |
13 |
acaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaataga |
65 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
13710 |
acaccacgagagcaagagaaaaaacccactgcctttccattcactaaaataga |
13658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 12515 - 12392
Alignment:
| Q |
4 |
ccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaagaattcagtcgg |
103 |
Q |
| |
|
||||| ||||||||||| ||||||||| || |||| ||||| |||||||||||||||||||||||||| ||||| ||||| || | ||| || | || |
|
|
| T |
12515 |
ccttgacgaacaccacggacacaagagaagaaccccagcgccttgccattcaccaaaatagaaagtctggccgagtgtaaaattgccaaaatccaattgg |
12416 |
T |
|
| Q |
104 |
taaacatagaagaaaaaccaaact |
127 |
Q |
| |
|
|| | ||||||||||||||||| |
|
|
| T |
12415 |
agaaaacagaagaaaaaccaaact |
12392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 391
Target Start/End: Complemental strand, 8416 - 8354
Alignment:
| Q |
329 |
aagtctgtcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacg |
391 |
Q |
| |
|
||||||||| || | ||||||||| |||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
8416 |
aagtctgtcggccacaattttcgtgacaattttaaattgaaaattggcaagcgctatgggacg |
8354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 19178175 - 19178093
Alignment:
| Q |
4 |
ccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaat |
86 |
Q |
| |
|
||||| || ||||| || || ||||| || |||||||| |||||||||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
19178175 |
ccttgacggacaccgcgggagcaagaaaagaaacccaccgccttaccattcaccaaaatagaaagacgggctgaaagcaaaat |
19178093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 14676909 - 14676977
Alignment:
| Q |
336 |
tcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccata |
404 |
Q |
| |
|
|||||||||||||| || | ||||| || |||||||| |||||||| ||||||||| |||| |||||| |
|
|
| T |
14676909 |
tcagctaaaattttagttattattttgaactgaaaattcgcaagagcaataggacggtagtcacccata |
14676977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0437 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0437
Description:
Target: scaffold0437; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 417
Target Start/End: Complemental strand, 8778 - 8705
Alignment:
| Q |
344 |
aattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccataacctgcgcccctg |
417 |
Q |
| |
|
|||||| |||| || |||||| ||||||||||||||||| || || || |||||||||||||| ||| ||||| |
|
|
| T |
8778 |
aattttagtaataactttaaactgaaaatttgcaagagcaatcggtcgatagtctcccataacccgcggccctg |
8705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 21973 - 22013
Alignment:
| Q |
25 |
caagagaaaaaacccactgccttaccattcaccaaaataga |
65 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
21973 |
caagaaaaaaaaccaactgcctttccattcaccaaaataga |
22013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 26233 - 26301
Alignment:
| Q |
336 |
tcagctaaaattttcgtaacaattttaaattgaaaatttgcaagagctataggacggaagtctcccata |
404 |
Q |
| |
|
|||||||||||||| || | ||||| || |||||||| |||||||| ||||||||| |||| |||||| |
|
|
| T |
26233 |
tcagctaaaattttagttattattttgaactgaaaattcgcaagagcaataggacggtagtcacccata |
26301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 373
Target Start/End: Complemental strand, 26695389 - 26695337
Alignment:
| Q |
321 |
ataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatt |
373 |
Q |
| |
|
||||||| ||||||||||| ||||| || |||| |||||||||||||||||| |
|
|
| T |
26695389 |
ataatagccagtctgtcagccaaaatcttagtaataattttaaattgaaaatt |
26695337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 373
Target Start/End: Complemental strand, 26965121 - 26965069
Alignment:
| Q |
321 |
ataatagaaagtctgtcagctaaaattttcgtaacaattttaaattgaaaatt |
373 |
Q |
| |
|
||||||| ||||||||||| ||||| || |||| |||||||||||||||||| |
|
|
| T |
26965121 |
ataatagccagtctgtcagccaaaatcttagtaataattttaaattgaaaatt |
26965069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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