View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11978_high_1_N (Length: 567)

Name: NF11978_high_1_N
Description: NF11978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11978_high_1_N
NF11978_high_1_N
[»] chr4 (43 HSPs)
chr4 (104-534)||(41860433-41860863)
chr4 (104-534)||(52681467-52681897)
chr4 (1-111)||(23906658-23906768)
chr4 (1-111)||(31960171-31960281)
chr4 (1-111)||(436044-436154)
chr4 (1-111)||(27450530-27450640)
chr4 (1-111)||(43433733-43433843)
chr4 (6-111)||(1211752-1211857)
chr4 (160-401)||(30576448-30576688)
chr4 (1-111)||(33227024-33227134)
chr4 (5-111)||(47265563-47265669)
chr4 (7-111)||(39708273-39708377)
chr4 (1-111)||(46583181-46583291)
chr4 (1-111)||(50286786-50286896)
chr4 (1-111)||(52569872-52569982)
chr4 (5-111)||(48174454-48174560)
chr4 (1-111)||(53707609-53707719)
chr4 (5-111)||(55578846-55578952)
chr4 (1-111)||(56375105-56375215)
chr4 (377-531)||(15056967-15057124)
chr4 (6-95)||(41009712-41009801)
chr4 (5-111)||(1777376-1777482)
chr4 (1-91)||(11389555-11389645)
chr4 (1-51)||(12494625-12494675)
chr4 (5-79)||(31458875-31458949)
chr4 (1-51)||(33191205-33191255)
chr4 (1-69)||(1793317-1793385)
chr4 (7-111)||(16002743-16002846)
chr4 (1-49)||(27983077-27983125)
chr4 (1-76)||(45205205-45205280)
chr4 (56-111)||(48622939-48622994)
chr4 (1-95)||(4440687-4440780)
chr4 (274-336)||(14991361-14991423)
chr4 (1-66)||(26037839-26037904)
chr4 (528-564)||(41861939-41861975)
chr4 (528-564)||(41862030-41862066)
chr4 (528-564)||(41862121-41862157)
chr4 (528-564)||(41862212-41862248)
chr4 (528-564)||(41862403-41862439)
chr4 (528-564)||(41946638-41946674)
chr4 (528-564)||(41946729-41946765)
chr4 (528-564)||(52680359-52680395)
chr4 (528-564)||(53285696-53285732)
[»] chr8 (16 HSPs)
chr8 (104-534)||(14995040-14995470)
chr8 (1-103)||(18752230-18752332)
chr8 (1-111)||(15215628-15215738)
chr8 (1-111)||(36565598-36565708)
chr8 (1-111)||(39946672-39946782)
chr8 (1-111)||(42854361-42854471)
chr8 (1-108)||(18124993-18125100)
chr8 (9-111)||(36395318-36395420)
chr8 (3-113)||(25288715-25288825)
chr8 (3-113)||(25300050-25300160)
chr8 (3-111)||(12492201-12492309)
chr8 (5-111)||(2796370-2796476)
chr8 (9-111)||(37077580-37077682)
chr8 (1-66)||(36545007-36545072)
chr8 (56-111)||(4032907-4032961)
chr8 (528-564)||(22732207-22732243)
[»] chr7 (35 HSPs)
chr7 (104-534)||(22005714-22006144)
chr7 (104-534)||(7892490-7892920)
chr7 (143-535)||(3598843-3599241)
chr7 (1-111)||(38606820-38606930)
chr7 (6-111)||(43281491-43281596)
chr7 (1-111)||(33072769-33072879)
chr7 (1-111)||(34869235-34869345)
chr7 (1-111)||(39906732-39906842)
chr7 (22-111)||(46356229-46356318)
chr7 (1-111)||(11593775-11593885)
chr7 (1-111)||(31005038-31005148)
chr7 (1-111)||(32630410-32630520)
chr7 (1-111)||(33350163-33350273)
chr7 (1-111)||(36869646-36869756)
chr7 (1-111)||(12841632-12841742)
chr7 (1-111)||(35906558-35906668)
chr7 (1-111)||(36651809-36651919)
chr7 (1-106)||(49029096-49029201)
chr7 (8-111)||(23404233-23404336)
chr7 (8-111)||(7272854-7272957)
chr7 (1-71)||(28628287-28628357)
chr7 (11-111)||(13859373-13859473)
chr7 (7-67)||(15681216-15681276)
chr7 (104-149)||(3595891-3595936)
chr7 (277-396)||(13604144-13604262)
chr7 (7-109)||(25579434-25579536)
chr7 (54-111)||(37616731-37616788)
chr7 (528-564)||(3600149-3600185)
chr7 (528-564)||(5090967-5091003)
chr7 (34-86)||(7189623-7189675)
chr7 (528-564)||(7891382-7891418)
chr7 (528-564)||(13927440-13927476)
chr7 (528-564)||(22004323-22004359)
chr7 (528-564)||(22004514-22004550)
chr7 (528-564)||(22004605-22004641)
[»] chr6 (16 HSPs)
chr6 (104-534)||(3590335-3590765)
chr6 (1-111)||(9706591-9706701)
chr6 (1-111)||(14030621-14030731)
chr6 (6-111)||(5258512-5258617)
chr6 (1-111)||(10100214-10100324)
chr6 (6-111)||(5631633-5631738)
chr6 (1-105)||(607980-608084)
chr6 (4-110)||(30679290-30679396)
chr6 (1-106)||(28085196-28085301)
chr6 (7-111)||(2689471-2689575)
chr6 (1-111)||(2065113-2065223)
chr6 (1-111)||(20427993-20428103)
chr6 (1-101)||(30031081-30031181)
chr6 (8-87)||(33496023-33496102)
chr6 (7-111)||(6056133-6056237)
chr6 (22-111)||(24631132-24631221)
[»] chr5 (22 HSPs)
chr5 (104-534)||(32674006-32674436)
chr5 (338-534)||(22636691-22636891)
chr5 (1-111)||(2075831-2075941)
chr5 (1-111)||(12492744-12492854)
chr5 (1-111)||(16347735-16347845)
chr5 (18-111)||(3301664-3301757)
chr5 (1-111)||(1275080-1275190)
chr5 (1-111)||(1287946-1288056)
chr5 (1-111)||(28977214-28977324)
chr5 (1-111)||(10639112-10639222)
chr5 (1-111)||(20318802-20318912)
chr5 (1-111)||(34272837-34272947)
chr5 (43-111)||(17340871-17340939)
chr5 (12-111)||(27709-27808)
chr5 (1-111)||(36200597-36200707)
chr5 (1-49)||(24178387-24178435)
chr5 (54-101)||(3394538-3394585)
chr5 (1-31)||(16454606-16454636)
chr5 (528-564)||(20844506-20844542)
chr5 (528-564)||(23179540-23179576)
chr5 (528-564)||(23179631-23179667)
chr5 (528-564)||(32672891-32672927)
[»] chr3 (27 HSPs)
chr3 (104-534)||(18200483-18200913)
chr3 (104-534)||(26950254-26950684)
chr3 (107-534)||(36092366-36092793)
chr3 (1-111)||(25191194-25191304)
chr3 (1-111)||(5168643-5168753)
chr3 (1-111)||(38849909-38850019)
chr3 (1-111)||(52138615-52138725)
chr3 (5-111)||(28245252-28245358)
chr3 (1-111)||(47542069-47542178)
chr3 (1-111)||(51448066-51448176)
chr3 (6-111)||(3186584-3186689)
chr3 (1-109)||(43695122-43695230)
chr3 (6-93)||(53519419-53519506)
chr3 (1-75)||(33272385-33272459)
chr3 (1-95)||(54278851-54278945)
chr3 (310-396)||(12807577-12807663)
chr3 (1-111)||(27917387-27917497)
chr3 (528-564)||(854976-855012)
chr3 (528-564)||(6953291-6953327)
chr3 (528-564)||(6953430-6953466)
chr3 (528-564)||(6953812-6953848)
chr3 (528-564)||(18199352-18199388)
chr3 (528-564)||(36093873-36093909)
chr3 (528-564)||(36093964-36094000)
chr3 (528-564)||(36947725-36947761)
chr3 (528-564)||(36947864-36947900)
chr3 (528-564)||(36948003-36948039)
[»] chr2 (27 HSPs)
chr2 (104-534)||(13906996-13907426)
chr2 (104-534)||(26454641-26455071)
chr2 (104-534)||(40604478-40604908)
chr2 (1-111)||(41197585-41197695)
chr2 (1-111)||(11992463-11992573)
chr2 (1-111)||(2610343-2610453)
chr2 (1-111)||(36183266-36183376)
chr2 (8-111)||(23997432-23997535)
chr2 (1-111)||(3865887-3865997)
chr2 (1-103)||(41763398-41763500)
chr2 (1-111)||(451979-452089)
chr2 (1-111)||(8180595-8180705)
chr2 (11-111)||(45367991-45368091)
chr2 (1-103)||(38429707-38429809)
chr2 (1-77)||(24583963-24584039)
chr2 (1-111)||(4807407-4807517)
chr2 (1-107)||(3244008-3244114)
chr2 (22-111)||(6238132-6238221)
chr2 (22-111)||(12734521-12734609)
chr2 (528-564)||(32287325-32287361)
chr2 (13-69)||(32443471-32443527)
chr2 (9-111)||(30743438-30743540)
chr2 (528-564)||(13899908-13899944)
chr2 (528-564)||(13905806-13905842)
chr2 (528-564)||(26453534-26453570)
chr2 (528-564)||(35433139-35433175)
chr2 (528-564)||(40603369-40603405)
[»] chr1 (29 HSPs)
chr1 (104-534)||(35595510-35595940)
chr1 (104-534)||(2045809-2046239)
chr1 (1-111)||(32083102-32083212)
chr1 (1-111)||(696084-696194)
chr1 (1-111)||(15085749-15085859)
chr1 (1-111)||(30202487-30202597)
chr1 (1-111)||(8671735-8671845)
chr1 (1-111)||(9592549-9592659)
chr1 (1-103)||(8391593-8391697)
chr1 (1-111)||(1210560-1210670)
chr1 (1-111)||(22089909-22090019)
chr1 (1-111)||(43240738-43240848)
chr1 (1-111)||(51441122-51441232)
chr1 (7-111)||(51601873-51601977)
chr1 (5-111)||(49347754-49347860)
chr1 (34-112)||(37463257-37463335)
chr1 (1-61)||(3192071-3192131)
chr1 (1-61)||(3200889-3200949)
chr1 (1-61)||(3209726-3209786)
chr1 (1-64)||(34792706-34792768)
chr1 (269-336)||(52589715-52589782)
chr1 (43-76)||(7921777-7921810)
chr1 (528-564)||(2051974-2052010)
chr1 (11-39)||(4001820-4001848)
chr1 (1-49)||(32231311-32231359)
chr1 (528-564)||(39514207-39514243)
chr1 (528-564)||(45507254-45507290)
chr1 (528-564)||(45507403-45507439)
chr1 (528-564)||(49791612-49791648)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-111)||(82536-82646)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-111)||(31283-31393)
[»] scaffold0570 (1 HSPs)
scaffold0570 (1-111)||(2627-2737)
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-51)||(25802-25852)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-111)||(11955-12065)
[»] scaffold0121 (3 HSPs)
scaffold0121 (528-564)||(41422-41458)
scaffold0121 (528-564)||(41240-41276)
scaffold0121 (528-564)||(41331-41367)
[»] scaffold0160 (1 HSPs)
scaffold0160 (528-564)||(36132-36168)


Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Original strand, 41860433 - 41860863
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41860433 caacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttc 41860532  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860533 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 41860632  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  41860633 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaacccc 41860732  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860733 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 41860832  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||| | ||||||||||    
T  41860833 tggttaaccttagtcacagaaaagaggagga 41860863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Complemental strand, 52681897 - 52681467
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52681897 caacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttc 52681798  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52681797 ttgcaacaaccaccaccgcataaatctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatccaattcaaaaagtcatcgg 52681698  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  |||||||||||||| |||||||||||||||| |||||||    
T  52681697 attacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaattgcaaaatcaacaaactaaacccc 52681598  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52681597 acaccaattatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 52681498  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||| | ||||||||||    
T  52681497 tggttaaccttagtcacagaaaagaggagga 52681467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 23906658 - 23906768
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||| |||||||||||||  ||||||| ||||  ||||||||||||| ||||    
T  23906658 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacacttcgtaccatacaacaacgccggtcggactgctgtccgatagaactttcc 23906757  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  23906758 tttcaacttaa 23906768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 31960171 - 31960281
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  ||||||||||||  ||||||||||||| ||||    
T  31960171 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtctgactgctgtccgatagaactttcc 31960270  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  31960271 tttcaacttaa 31960281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 436154 - 436044
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  ||||||| ||||  ||||||||||||| ||||    
T  436154 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtcggactgctgtccgatagaactttcc 436055  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  436054 tttcaacttaa 436044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 27450530 - 27450640
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| |||||||||||||||||||||||||| |||||||  ||||||||||  |||||||||||||||| |||||||||| ||||| |||||||  ||||    
T  27450530 tctccgctacacttactttactctcgtgttggctcttaactgcccaacactccgtaccatacaacattgtcggtctgactgttgtctgatagaattttcc 27450629  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  27450630 tttcagcttaa 27450640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 43433843 - 43433733
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  |||||||||| |  ||||||||||||| ||||    
T  43433843 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtctgattgctgtccgatagaactttcc 43433744  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  43433743 tttcaacttaa 43433733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 1211752 - 1211857
Alignment:
Q  6 gctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttca 105  Q
    ||||||||||||| | |||||||||| ||||||| || |||||||| ||||||| |||||||  ||||||||||| |||||||||||||| |||||||||    
T  1211752 gctacacttacttgattctcgtgttggctcttaaccgtccaacactctgtaccacacaacatcaccggtctgactgttgtccgatagaactttcctttca 1211851  T
Q  106 acttaa 111  Q
    ||||||    
T  1211852 acttaa 1211857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 160 - 401
Target Start/End: Original strand, 30576448 - 30576688
Alignment:
Q  160 tttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac-------aaccaccaccgcataaacctccttctagaatataacaaaccg 252  Q
    |||| |||||||||||| ||||||| |||| |||  ||||||||||||||        ||||||| ||||||||||||| |||||||| |||            
T  30576448 tttattcaaccaccaccatataaatcatcagcgcaggggccttcttgcaagttacgaaaaccaccgccgcataaacctcgttctagaaaatat------- 30576540  T
Q  253 aaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattc 352  Q
     |||||||||| |||||||||||||| ||||| |||||||||| || ||| |||||||||||| ||||||| || |||||||| |||| | |||||||||    
T  30576541 -aaaagagatggtaataaattagataacaatgaaattcaaaaactcgtcgaattacaaataacaaaaaatccaattaaacaaaagctcttgctcttattc 30576639  T
Q  353 caaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacc 401  Q
    ||||| | |   || ||||| ||  |||||||||| |||||||||||||    
T  30576640 caaccgccattttggaaatttctctactgcaaaatgaacaaaccaaacc 30576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 33227134 - 33227024
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||| | | |||| ||||||||||||| |||||||||||  |||||||||||||  ||||||| ||||  ||||||||||||| ||||    
T  33227134 tctctgctacacttacatgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtcggactgctgtccgatagaactttcc 33227035  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  33227034 tttcaacttaa 33227024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 47265563 - 47265669
Alignment:
Q  5 tgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttc 104  Q
    |||||||| ||||| | |||||||||||||||||| || |||| ||||||||||||||||||| || ||||||||| ||||| |||||||| ||| ||||    
T  47265563 tgctacacctacttgattctcgtgttgactcttaaccgtccaatactttgtaccatacaacatcgctggtctgactgttgtcagatagaactttcatttc 47265662  T
Q  105 aacttaa 111  Q
    |||||||    
T  47265663 aacttaa 47265669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 39708377 - 39708273
Alignment:
Q  7 ctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaa 106  Q
    |||||||||||| | |||||||||| ||||||| |||||||||||  |||||||||||||||| || || |||| ||| |||||||||| ||||||||||    
T  39708377 ctacacttacttgattctcgtgttgcctcttaaccgcccaacactccgtaccatacaacattgtcgatcggactgttgcccgatagaactttcctttcaa 39708278  T
Q  107 cttaa 111  Q
    |||||    
T  39708277 cttaa 39708273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 46583181 - 46583291
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  |||| |||||||  ||||| ||||||| ||||    
T  46583181 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacagcgccgatctgactgctgtccaatagaactttcc 46583280  T
Q  101 tttcaacttaa 111  Q
    |||||| ||||    
T  46583281 tttcaaattaa 46583291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 50286896 - 50286786
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  ||| |||||||||  | || ||||||  |||||||||||||| ||||    
T  50286896 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtatcatacaacaacgtcgatctgacggttgtccgatagaactttcc 50286797  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  50286796 tttcaacttaa 50286786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 52569872 - 52569982
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| ||  |||||||  |||||||||||||   ||||||||||| |||||| ||||||| ||||    
T  52569872 tctctgctacacttacttgattctcatgttgactcttaaccgaacaacactccgtaccatacaacaacaccggtctgactgttgtccaatagaactttcc 52569971  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  52569972 tttcaacttaa 52569982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 48174454 - 48174560
Alignment:
Q  5 tgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttc 104  Q
    ||||| |||||||| | | || ||||||||||||| || ||||||||  |||||||||||||  ||||||||||||  ||||||||||||| ||||||||    
T  48174454 tgctatacttacttgattttcatgttgactcttaaccgtccaacactccgtaccatacaacaacgccggtctgactgctgtccgatagaactttcctttc 48174553  T
Q  105 aacttaa 111  Q
    |||||||    
T  48174554 aacttaa 48174560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 53707719 - 53707609
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| ||||||||||| | ||||||||| ||  ||||||| || |  || |||||||||| ||||    
T  53707719 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactctctaccatacatcaacgccggtcggaatgctggccgatagaactttcc 53707620  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  53707619 tttcaacttaa 53707609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 55578952 - 55578846
Alignment:
Q  5 tgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttc 104  Q
    ||||||||||| || | ||||||||||  |||||| ||||||||||||  |||||||||||||||  ||||||||| |||||||||||||  |||||| |    
T  55578952 tgctacacttaattgattctcgtgttggttcttaaccgcccaacacttcataccatacaacattgttggtctgactgttgtccgatagaattttccttcc 55578853  T
Q  105 aacttaa 111  Q
    |||||||    
T  55578852 aacttaa 55578846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 56375215 - 56375105
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    ||||||||||||||  || | |||| ||||||||||||| |||||||||||  ||||||||||| |  || |||||||||  ||||||||||| | ||||    
T  56375215 tctctgctacacttgtttgattctcatgttgactcttaaccgcccaacactccgtaccatacaataacgctggtctgactgctgtccgatagatctttcc 56375116  T
Q  101 tttcaacttaa 111  Q
    |||||| ||||    
T  56375115 tttcaaattaa 56375105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 531
Target Start/End: Complemental strand, 15057124 - 15056967
Alignment:
Q  377 aactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtac 472  Q
    |||| ||||||||||| ||||||||  ||| |||||||||    ||||||||| ||||||||  |||||  |||| |||||||||||| |||||||| ||    
T  15057124 aactccaaaatcaacataccaaacct-acaacaatcatatgaacaacaattacgttgattttaaaagaaatctaagaagctattgcaatctattttgaac 15057026  T
Q  473 aatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagagga 531  Q
    || | |||||||||| |  || ||||||  |||||||| ||| ||||| ||||||||||    
T  15057025 aacaaaggaattgaaagagaataaagatacgtggttaaacttggtcacgaagaagagga 15056967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 41009712 - 41009801
Alignment:
Q  6 gctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaac 95  Q
    ||||||||||||| | |||| ||||| ||||||| |||||||||||  |||| ||||||||| || ||||||| | |||||| |||||||    
T  41009712 gctacacttacttgattctcatgttggctcttaatcgcccaacactccgtactatacaacatcgctggtctgattgttgtccaatagaac 41009801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 1777376 - 1777482
Alignment:
Q  5 tgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttc 104  Q
    ||||| |||||||| | | || ||||||||||||| |   |||||||  ||| |||||||||  | ||||||||||  ||||||||||||| ||||||||    
T  1777376 tgctatacttacttgattttcatgttgactcttaacctttcaacactccgtatcatacaacaacgtcggtctgactgctgtccgatagaactttcctttc 1777475  T
Q  105 aacttaa 111  Q
    |||||||    
T  1777476 aacttaa 1777482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 11389645 - 11389555
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgata 91  Q
    |||||||||| ||||||||| ||||| ||||  |||||| |||||||||||   | ||||||||||||| |||||| || | |||||||||    
T  11389645 tctctgctacgcttactttattctcgagttggttcttaaccgcccaacactactttccatacaacattgtcggtcttacaactgtccgata 11389555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12494675 - 12494625
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacact 51  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  12494675 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacact 12494625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 31458949 - 31458875
Alignment:
Q  5 tgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgac 79  Q
    |||||||||||||||| | ||||||||  ||||||  ||||||||||  |||||||| ||||| |||||||||||    
T  31458949 tgctacacttactttattttcgtgttggttcttaactgcccaacactccgtaccataaaacatcgccggtctgac 31458875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33191205 - 33191255
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacact 51  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  33191205 tctctgctacacttacttgattctcatgttgactcttaatcgcccaacact 33191255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1793385 - 1793317
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattg 69  Q
    |||| ||||||||||||| | ||| |||||| ||||||| |||| |||||| |||| ||||||||||||    
T  1793385 tctccgctacacttacttgattctagtgttggctcttaaccgccaaacactctgtatcatacaacattg 1793317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 16002846 - 16002743
Alignment:
Q  7 ctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaa 106  Q
    |||||||||||| | |||||||||||||||||| | |||||||||| ||  |||||||||| || ||||| |||  |||| |||| ||| || |||| ||    
T  16002846 ctacacttacttgattctcgtgttgactcttaacctcccaacacttcgt-tcatacaacatcgctggtctaactgatgtctgataaaacttttctttgaa 16002748  T
Q  107 cttaa 111  Q
    |||||    
T  16002747 cttaa 16002743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27983125 - 27983077
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaaca 49  Q
    |||| |||||||||||||||||||| ||||||||||||| ||| |||||    
T  27983125 tctccgctacacttactttactctcatgttgactcttaaccgctcaaca 27983077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 45205205 - 45205280
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtct 76  Q
    |||| ||||| ||||||| | ||||||||||  ||||||  ||||||||||  |||||||||||||| ||||||||    
T  45205205 tctccgctacgcttacttgattctcgtgttggttcttaactgcccaacactccgtaccatacaacatcgccggtct 45205280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 48622939 - 48622994
Alignment:
Q  56 accatacaacattgccggtctgactattgtccgatagaaccttcctttcaacttaa 111  Q
    ||||||||| |  ||||||||||||  ||||||||||||| |||||||||||||||    
T  48622939 accatacaataacgccggtctgactgctgtccgatagaactttcctttcaacttaa 48622994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 4440780 - 4440687
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaac 95  Q
    |||||||||||||||||| | |||| ||||||||||||| || |||||||   ||| |||||||||  |  |||||||||  |||||||||||||    
T  4440780 tctctgctacacttacttgattctcatgttgactcttaaccg-ccaacaccccgtatcatacaacaacgttggtctgactgctgtccgatagaac 4440687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 336
Target Start/End: Complemental strand, 14991423 - 14991361
Alignment:
Q  274 agatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaat 336  Q
    |||||||||||||||||| ||  |||||  | |||||||||||||| |||||| |||||||||    
T  14991423 agatagcaatgcaattcagaatctcatcataatacaaataaccaaagatcaaattaaacaaat 14991361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26037839 - 26037904
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaaca 66  Q
    |||| ||| ||||||||| | |||||||||| ||||||| |||||||||||  ||| |||||||||    
T  26037839 tctccgctccacttacttgattctcgtgttggctcttaaccgcccaacactccgtatcatacaaca 26037904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 41861939 - 41861975
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41861939 aggaggagggaaattaggaaatcatggttagggtttg 41861975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 41862030 - 41862066
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862030 aggaggagggaaattaggaaatcatggttagggtttg 41862066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 41862121 - 41862157
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862121 aggaggagggaaattaggaaatcatggttagggtttg 41862157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 41862212 - 41862248
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862212 aggaggagggaaattaggaaatcatggttagggtttg 41862248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 41862403 - 41862439
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862403 aggaggagggaaattaggaaatcatggttagggtttg 41862439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 41946638 - 41946674
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946638 aggaggagggaaattaggaaatcatggttagggtttg 41946674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 41946729 - 41946765
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946729 aggaggagggaaattaggaaatcatggttagggtttg 41946765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 52680395 - 52680359
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  52680395 aggaggagggaaattaggaaatcatggttagggtttg 52680359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 53285732 - 53285696
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  53285732 aggaggagtgaaattaggaaatcatggttagggtttg 53285696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Original strand, 14995040 - 14995470
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    |||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14995040 caacttaatttgtagtttgcatagctcaggggatatcaaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccacgagggccttc 14995139  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14995140 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaacagtcatcgg 14995239  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  14995240 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaacccc 14995339  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995340 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 14995439  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||||| ||||||||||    
T  14995440 tggttaaccttagtcacaaaaaagaggagga 14995470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 18752230 - 18752332
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| |||||||||||||||||||||||||| ||||||| || ||| ||||  ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  18752230 tctccgctacacttactttactctcgtgttggctcttaaccgtccagcactccgtaccatacaacattgccggtctgactgttgtccgatagaactttcc 18752329  T
Q  101 ttt 103  Q
    |||    
T  18752330 ttt 18752332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 15215628 - 15215738
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| ||| |||||||||||||||||||||| ||||||| |||||||||||  |||||||||||||||  ||||||||||| ||| ||||||||| ||||    
T  15215628 tctccgcttcacttactttactctcgtgttggctcttaaccgcccaacactccgtaccatacaacattttcggtctgactactgttcgatagaactttcc 15215727  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  15215728 tttcagcttaa 15215738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 36565598 - 36565708
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| | ||||||||||| |||||||||||  |||||||||||||  ||||||||||||  ||||||||||||| ||||    
T  36565598 tctctgctacacttacttgattctcatattgactcttaaccgcccaacactccgtaccatacaacaacgccggtctgactgctgtccgatagaactttcc 36565697  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  36565698 tttcaacttaa 36565708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 39946782 - 39946672
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||||| |  |||||||||||||| ||||| ||||||  ||||||||||||| ||||    
T  39946782 tctctgctacacttacttgattctcgtgttgactcttaaccgcccaacattccgtaccatacaacatcgccggcctgactgctgtccgatagaactttcc 39946683  T
Q  101 tttcaacttaa 111  Q
    |||||| ||||    
T  39946682 tttcaatttaa 39946672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 42854361 - 42854471
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| |||||||| ||||||||||||||||| ||||||| |||||||||||  |||||||||||||||| ||||||||||  ||||||||||||  ||||    
T  42854361 tctccgctacactaactttactctcgtgttggctcttaaccgcccaacactccgtaccatacaacattgtcggtctgactgctgtccgatagaattttcc 42854460  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  42854461 tttcagcttaa 42854471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 18125100 - 18124993
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| ||||||||||||| | |||| ||||| ||||||| |||||||||||  ||||||||||||||||  ||||||||| |||||||||||||| ||||    
T  18125100 tctccgctacacttacttgattctcatgttggctcttaaccgcccaacactccgtaccatacaacattgttggtctgactgttgtccgatagaactttcc 18125001  T
Q  101 tttcaact 108  Q
    ||||||||    
T  18125000 tttcaact 18124993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 36395318 - 36395420
Alignment:
Q  9 acacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaact 108  Q
    |||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  ||||||| ||||  ||||||||||||| ||||||||||||    
T  36395318 acacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtcggactgctgtccgatagaactttcctttcaact 36395417  T
Q  109 taa 111  Q
    |||    
T  36395418 taa 36395420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 25288825 - 25288715
Alignment:
Q  3 tctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctt 102  Q
    ||||||||||||| || | |||||||||| ||||||| |||||||||||  ||| |||||||||| |||||||  ||| ||||  |||||||| ||||||    
T  25288825 tctgctacacttatttgattctcgtgttggctcttaaccgcccaacactccgtagcatacaacatcgccggtcgaactgttgtgtgatagaactttcctt 25288726  T
Q  103 tcaacttaatt 113  Q
    |||||||||||    
T  25288725 tcaacttaatt 25288715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 25300160 - 25300050
Alignment:
Q  3 tctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctt 102  Q
    ||||||||||||| || | |||||||||| ||||||| |||||||||||  ||| |||||||||| |||||||  ||| ||||  |||||||| ||||||    
T  25300160 tctgctacacttatttgattctcgtgttggctcttaaccgcccaacactccgtagcatacaacatcgccggtcgaactgttgtgtgatagaactttcctt 25300061  T
Q  103 tcaacttaatt 113  Q
    |||||||||||    
T  25300060 tcaacttaatt 25300050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 12492201 - 12492309
Alignment:
Q  3 tctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctt 102  Q
    |||||||||||||| | | |||| ||||||||||||| |||||||||||  ||||||| |||||  ||||||| |||   ||||||||||||| ||||||    
T  12492201 tctgctacacttacatgattctcatgttgactcttaaccgcccaacactccgtaccatgcaacaacgccggtcggacggctgtccgatagaactttcctt 12492300  T
Q  103 tcaacttaa 111  Q
    ||| |||||    
T  12492301 tcatcttaa 12492309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 2796476 - 2796370
Alignment:
Q  5 tgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttc 104  Q
    |||||||||||||| | |||||||||||||||||| | ||||| |||  |||||||| ||||  | |||||| ||| |||||| ||| ||| ||||||||    
T  2796476 tgctacacttacttgattctcgtgttgactcttaaccacccaagactcggtaccatataacaacgtcggtctaactgttgtccaatataactttcctttc 2796377  T
Q  105 aacttaa 111  Q
    |||||||    
T  2796376 aacttaa 2796370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 37077682 - 37077580
Alignment:
Q  9 acacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaact 108  Q
    |||||||||| | |||||||||| |||||||  ||||||||||  |||||||||| ||| | |||||||||| ||||| || | ||| | ||||||||||    
T  37077682 acacttacttgattctcgtgttggctcttaactgcccaacactccgtaccatacagcatcgacggtctgactgttgtctgacataacttccctttcaact 37077583  T
Q  109 taa 111  Q
    |||    
T  37077582 taa 37077580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36545072 - 36545007
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaaca 66  Q
    |||||||||||||||||| | |||| ||||||||||||| | |||||||||  |||||||||||||    
T  36545072 tctctgctacacttacttgattctcatgttgactcttaaccacccaacactcggtaccatacaaca 36545007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 4032907 - 4032961
Alignment:
Q  56 accatacaacattgccggtctgactattgtccgatagaaccttcctttcaacttaa 111  Q
    |||||||||| ||| |||||||||| |||||||||| ||| |||||||||||||||    
T  4032907 accatacaac-ttgtcggtctgactgttgtccgataaaactttcctttcaacttaa 4032961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 22732207 - 22732243
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22732207 aggaggagtgaaattaggaaatcatggttagggtttg 22732243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Complemental strand, 22006144 - 22005714
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22006144 caacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttc 22006045  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22006044 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 22005945  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  22005944 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaaaaaaccaaacccc 22005845  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005844 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 22005745  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||| | ||||||||||    
T  22005744 tggttaaccttagtcacagaaaagaggagga 22005714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Complemental strand, 7892920 - 7892490
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7892920 caacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttc 7892821  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7892820 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatccaattcaaaaagtcatcgg 7892721  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  7892720 attacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaacccc 7892621  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7892620 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 7892521  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||| | ||||||||||    
T  7892520 tggttaaccttagtcacagaaaagaggagga 7892490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 143 - 535
Target Start/End: Original strand, 3598843 - 3599241
Alignment:
Q  143 agacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttcta----- 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||         
T  3598843 agacacagtcacatcagtttaatcaaccaccaccgtataaattatcatcgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagatct 3598942  T
Q  238 -gaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaat 336  Q
     |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  3598943 agaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgaaatacaaataaccaaaaatcaaactaaacaaat 3599042  T
Q  337 gctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgt 436  Q
    ||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3599043 gctcccactcttattccaaccccgaatttgaaaattcctgaactacaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgt 3599142  T
Q  437 aagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggaggat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  3599143 aagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatgtaaagaaagatgtgtggttaaccttagtcacagataagaggaggat 3599241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 38606930 - 38606820
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| |||||||||||||||||||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  38606930 tctccgctacacttactttactctcgtgttggctcttaaccgcccaacactccgtaccatacaacattgccggtctgactgttgtccgatagaactttcc 38606831  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  38606830 tttcagcttaa 38606820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 43281596 - 43281491
Alignment:
Q  6 gctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttca 105  Q
    ||||||||||||||||||| | |||| ||||||| ||||||||||| |||||||||||||||||||||| |||||  ||||||||||||| |||||||||    
T  43281596 gctacacttactttactcttgcgttggctcttaaccgcccaacactctgtaccatacaacattgccggtttgactgctgtccgatagaactttcctttca 43281497  T
Q  106 acttaa 111  Q
     |||||    
T  43281496 gcttaa 43281491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 33072879 - 33072769
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    ||||||||||||||| || | |||| ||||||||||||| ||||||||||| ||||||||||||||  |||||||| ||| |||||||||||||| ||||    
T  33072879 tctctgctacacttatttgattctcatgttgactcttaaccgcccaacactctgtaccatacaacaacgccggtctaactgttgtccgatagaactttcc 33072780  T
Q  101 tttcaacttaa 111  Q
    ||| |||||||    
T  33072779 ttttaacttaa 33072769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 34869345 - 34869235
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    ||||| |||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  ||||||||||||  ||||||||||||| ||||    
T  34869345 tctctactacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtctgactgctgtccgatagaactttcc 34869246  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  34869245 tttcaacttaa 34869235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 39906732 - 39906842
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||| ||||||  |||||||||||||  ||||||||||||  ||||||||||||| ||||    
T  39906732 tctctgctacacttacttgattctcatgttgactcttaatcgcctaacactccgtaccatacaacaacgccggtctgactgctgtccgatagaactttcc 39906831  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  39906832 tttcaacttaa 39906842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 46356229 - 46356318
Alignment:
Q  22 tctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaacttaa 111  Q
    |||| ||||||||||||| |||||||||||  ||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||    
T  46356229 tctcatgttgactcttaaccgcccaacactccgtaccatacaacaatgccggtctgactactgtccgatagaactttcctttcaacttaa 46356318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 11593885 - 11593775
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| || ||||||||  |||||||||||||  |||||||  ||| |||||||||||||| ||||    
T  11593885 tctctgctacacttacttgattctcatgttgactcttaaccgtccaacactccgtaccatacaacaacgccggtcgaactgttgtccgatagaactttcc 11593786  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  11593785 tttcaacttaa 11593775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 31005148 - 31005038
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||| ||||||  |||||||||||||  ||||||| ||||  ||||||||||||| ||||    
T  31005148 tctctgctacacttacttgattctcatgttgactcttaaccgcctaacactccgtaccatacaacaacgccggtcggactgctgtccgatagaactttcc 31005049  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  31005048 tttcaacttaa 31005038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 32630520 - 32630410
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| ||||||||||||||||||||||||||  |||||| |||||| ||||  |||||||||||||||| |||||||| |  ||||||||||||| ||||    
T  32630520 tctccgctacacttactttactctcgtgttggttcttaaccgcccagcactccgtaccatacaacattgtcggtctgattgatgtccgatagaactttcc 32630421  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  32630420 tttcagcttaa 32630410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 33350163 - 33350273
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  ||||||| ||||  ||||||||||||| ||||    
T  33350163 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtcggactgctgtccgatagaactttcc 33350262  T
Q  101 tttcaacttaa 111  Q
    | |||||||||    
T  33350263 tgtcaacttaa 33350273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 36869646 - 36869756
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | || ||||||||||||||  ||| ||||| |  |||||||||||||| ||||| |||||| |||||||||||||| ||||    
T  36869646 tctctgctacacttacttgattcacgtgttgactcttagtcgctcaacattccgtaccatacaacatcgccggcctgactgttgtccgatagaactttcc 36869745  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  36869746 tttcaacttaa 36869756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 12841632 - 12841742
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| | |||||||||  |||||||||||||  ||||||| ||||  ||| ||||||||| ||||    
T  12841632 tctctgctacacttacttgattctcatgttgactcttaaccacccaacactccgtaccatacaacaacgccggtcagactgctgtacgatagaactttcc 12841731  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  12841732 tttcaacttaa 12841742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 35906558 - 35906668
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| | |||||||||  ||| |||||||||  ||||||| ||||  ||||||||||||| ||||    
T  35906558 tctctgctacacttacttgattctcatgttgactcttaaccacccaacactccgtatcatacaacaacgccggtcggactgctgtccgatagaactttcc 35906657  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  35906658 tttcaacttaa 35906668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 36651919 - 36651809
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||| ||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  ||||||| || |  ||||||||||||| ||||    
T  36651919 tctctgttacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtcggattgctgtccgatagaactttcc 36651820  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  36651819 tttcaacttaa 36651809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 49029201 - 49029096
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||   |||||  ||||  ||||||||||||| ||||    
T  49029201 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacaccggttggactgctgtccgatagaactttcc 49029102  T
Q  101 tttcaa 106  Q
    ||||||    
T  49029101 tttcaa 49029096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 23404336 - 23404233
Alignment:
Q  8 tacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaac 107  Q
    ||||||||||| | ||||||| || || |||| ||||||| |||| ||||||||||| || | |||||||||| |||||||||||||  |||||||||||    
T  23404336 tacacttacttgattctcgtgctggcttttaaccgcccaaaacttcgtaccatacaatatcgtcggtctgactgttgtccgatagaattttcctttcaac 23404237  T
Q  108 ttaa 111  Q
    ||||    
T  23404236 ttaa 23404233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 7272957 - 7272854
Alignment:
Q  8 tacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaac 107  Q
    ||||||||||| | |||||||||| |||| || ||||||||||| |||| |||||||||||| |||| |||||  || |||||| ||| ||||| |||||    
T  7272957 tacacttacttgattctcgtgttggctctcaaccgcccaacactctgtatcatacaacattgtcggtttgactgctgaccgatacaactttcctctcaac 7272858  T
Q  108 ttaa 111  Q
    ||||    
T  7272857 ttaa 7272854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 28628287 - 28628357
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgcc 71  Q
    |||||||||| ||||||||| ||||||||||  ||| || ||||||||||||||| |||||||||||||||    
T  28628287 tctctgctacgcttactttattctcgtgttggttctcaaccgcccaacactttgttccatacaacattgcc 28628357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 13859373 - 13859473
Alignment:
Q  11 acttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaactta 110  Q
    |||||||| | ||||||||| |||||||| ||||||||| |  |||||| |||||| ||||||||| |||  ||| | ||||||| ||||||||||||||    
T  13859373 acttacttgattctcgtgttaactcttaaccgcccaacattccgtaccaaacaacactgccggtctaactgctgttcaatagaactttcctttcaactta 13859472  T
Q  111 a 111  Q
    |    
T  13859473 a 13859473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 15681276 - 15681216
Alignment:
Q  7 ctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacat 67  Q
    |||||||||||| | |||||||||| ||||||| ||||||||||| | |||||||||||||    
T  15681276 ctacacttacttgagtctcgtgttggctcttaaccgcccaacactctataccatacaacat 15681216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 3595891 - 3595936
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacaca 149  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||    
T  3595891 caacttaatttgtagtttgcatagctcagaggacatctaagacaca 3595936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 396
Target Start/End: Original strand, 13604144 - 13604262
Alignment:
Q  277 tagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctg 376  Q
    ||||||| ||||| ||| | ||| | |||||| ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||  ||||||||| |     
T  13604144 tagcaatacaatttaaacactcaccagattacgaataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcat- 13604242  T
Q  377 aactgcaaaatcaacaaacc 396  Q
    || || ||||||||||||||    
T  13604243 aaatgtaaaatcaacaaacc 13604262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 25579434 - 25579536
Alignment:
Q  7 ctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaa 106  Q
    |||| |||| |||| ||||||||||  |||||| ||||||||| |  || ||||||||||| |||||||| ||   ||||||||||||  |||| |||||    
T  25579434 ctacgcttattttattctcgtgttggttcttaaccgcccaacattccgttccatacaacatcgccggtcttacagctgtccgatagaattttcccttcaa 25579533  T
Q  107 ctt 109  Q
    |||    
T  25579534 ctt 25579536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 37616788 - 37616731
Alignment:
Q  54 gtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaacttaa 111  Q
    ||||||||||||| || ||||||||||  || |||||| ||| |||||||||||||||    
T  37616788 gtaccatacaacaatgtcggtctgactgctggccgatataactttcctttcaacttaa 37616731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 3600149 - 3600185
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  3600149 aggaggagggaaattaggaaatcatggttagggtttg 3600185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 5091003 - 5090967
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  5091003 aggaggagtgaaattaggaaatcatggttagggtttg 5090967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 7189623 - 7189675
Alignment:
Q  34 tcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtc 86  Q
    |||||| | ||||||||| ||||||||||||||| | ||||||||||| ||||    
T  7189623 tcttaaccacccaacactctgtaccatacaacatcgtcggtctgactactgtc 7189675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 7891418 - 7891382
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  7891418 aggaggagggaaattaggaaatcatggttagggtttg 7891382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 13927476 - 13927440
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13927476 aggaggagggaaattaggaaatcatggttagggtttg 13927440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 22004359 - 22004323
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004359 aggaggagggaaattaggaaatcatggttagggtttg 22004323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 22004550 - 22004514
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004550 aggaggagggaaattaggaaatcatggttagggtttg 22004514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 22004641 - 22004605
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004641 aggaggagggaaattaggaaatcatggttagggtttg 22004605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Complemental strand, 3590765 - 3590335
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3590765 caacttaatttgtagtttgcatagctcaggggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 3590666  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3590665 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 3590566  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  3590565 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattgctgaactgcaaaatcaacaaaccaaacccc 3590466  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  3590465 acaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgcaagctattttgtacaatagaggaattgaatagagagaaagatgtg 3590366  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||| | ||||||||||    
T  3590365 tggttaaccttagtcacataaaagaggagga 3590335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 9706701 - 9706591
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| |||||||||||||||||||||||||||||||||| | || ||||||| |||||||||||||||||||||||||||  ||| ||||||||| ||||    
T  9706701 tctccgctacacttactttactctcgtgttgactcttaaccacctaacacttcgtaccatacaacattgccggtctgactgctgttcgatagaactttcc 9706602  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  9706601 tttcagcttaa 9706591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 14030731 - 14030621
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||  |||||||||||||||||  || ||||| |||||||||||||| |||     
T  14030731 tctctgctacacttactttactctcgtgttgacttttaaccgcccaacactccgtaccatacaacattgctagtttgactgttgtccgatagaactttca 14030632  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  14030631 tttcagcttaa 14030621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 5258512 - 5258617
Alignment:
Q  6 gctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttca 105  Q
    |||||||||||||| ||||||||||| |||||   |||||||||||  ||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  5258512 gctacacttactttgctctcgtgttggctcttcgccgcccaacactccgtaccatacaacattgccggtctgactgttgtccgatagaactttcctttca 5258611  T
Q  106 acttaa 111  Q
     |||||    
T  5258612 gcttaa 5258617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 10100214 - 10100324
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| ||||||||||||| |||||||| ||| ||||||| | |||||||||  |||||||||||||| | ||||||||||| ||||||||||||| ||||    
T  10100214 tctccgctacacttacttgactctcgtcttggctcttaacctcccaacactccgtaccatacaacatcgtcggtctgactactgtccgatagaactttcc 10100313  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  10100314 tttcaacttaa 10100324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 5631738 - 5631633
Alignment:
Q  6 gctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttca 105  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||||   ||||||||||||||| |||||||||| |||||||||||||  |||||||||    
T  5631738 gctacacttactttactctcgcgttggctcttaaccgcccaacactccataccatacaacattgtcggtctgactgttgtccgatagaattttcctttca 5631639  T
Q  106 acttaa 111  Q
     |||||    
T  5631638 gcttaa 5631633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 608084 - 607980
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| ||||||||||||||| |||||||||| ||||||| |||||||||||  |||| ||||||||||||||||||||||  ||||||||||||| || |    
T  608084 tctccgctacacttactttattctcgtgttggctcttaaccgcccaacactccgtacaatacaacattgccggtctgactgctgtccgatagaacttttc 607985  T
Q  101 tttca 105  Q
    |||||    
T  607984 tttca 607980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 30679396 - 30679290
Alignment:
Q  4 ctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttccttt 103  Q
    ||||||||||||||| | ||||||||||| ||||||  | |||||| | || |||||||||||| | |||||||||| ||||| |||||||| |||||||    
T  30679396 ctgctacacttacttgattctcgtgttgattcttaactgtccaacattatgcaccatacaacatcgtcggtctgactgttgtctgatagaactttccttt 30679297  T
Q  104 caactta 110  Q
    |||||||    
T  30679296 caactta 30679290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 28085301 - 28085196
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||  |||||||||||  |||||||||| ||   |||||||||||  ||||||||||||| ||||    
T  28085301 tctctgctacacttacttgattctcatgttgactcttagccgcccaacactccgtaccatacagcaacaccggtctgactgctgtccgatagaactttcc 28085202  T
Q  101 tttcaa 106  Q
    ||||||    
T  28085201 tttcaa 28085196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 2689575 - 2689471
Alignment:
Q  7 ctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaa 106  Q
    ||||| |||||| | ||||| |||| || |||| |||||||||||  |||||||||||||| | ||||||||||  |||||||| |||| ||||||||||    
T  2689575 ctacatttacttaattctcgcgttggctgttaaccgcccaacactccgtaccatacaacatcgacggtctgactgctgtccgattgaactttcctttcaa 2689476  T
Q  107 cttaa 111  Q
    |||||    
T  2689475 cttaa 2689471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 2065113 - 2065223
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| ||||||| ||||| | |||||||||| ||||||| || |||||| |  |||||||||||||| ||| || | ||  |||||||||||||  ||||    
T  2065113 tctccgctacacgtacttgattctcgtgttggctcttaaccgtccaacattccgtaccatacaacatcgccagttttacggttgtccgatagaagtttcc 2065212  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  2065213 tttcaacttaa 2065223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 20427993 - 20428103
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| |||||||||| || |||||||||||| ||||||| | ||||||||| ||||| ||||||||||    || |||||  ||||| ||||||| ||||    
T  20427993 tctccgctacacttatttgactctcgtgttggctcttaaccacccaacactctgtactatacaacatttttagtttgactgctgtccaatagaactttcc 20428092  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  20428093 tttcagcttaa 20428103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 30031181 - 30031081
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| |||||||| |||| | |||| ||||| ||||||| |||||||||||  ||||||||||||||    |||||||||  ||||||||||||| ||||    
T  30031181 tctccgctacactaacttgattctcatgttggctcttaaccgcccaacactccgtaccatacaacatcattggtctgactgctgtccgatagaactttcc 30031082  T
Q  101 t 101  Q
    |    
T  30031081 t 30031081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 33496102 - 33496023
Alignment:
Q  8 tacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtcc 87  Q
    ||||||||||| | |||| |||||  | |||| || |||||||| |||||||||||||||||| ||||||||| ||||||    
T  33496102 tacacttacttgattctcatgttggtttttaaccgtccaacactctgtaccatacaacattgcaggtctgactgttgtcc 33496023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 6056133 - 6056237
Alignment:
Q  7 ctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaa 106  Q
    |||| ||||||| | | ||||||||  |||||| | |||||||||  ||| |||| ||||||| |||||||||  |||||||||||||   |||||||||    
T  6056133 ctacgcttacttgattttcgtgttggttcttaaccacccaacactccgtatcatataacattgtcggtctgaccgttgtccgatagaattatcctttcaa 6056232  T
Q  107 cttaa 111  Q
    |||||    
T  6056233 cttaa 6056237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 24631132 - 24631221
Alignment:
Q  22 tctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaacttaa 111  Q
    |||||| ||| ||||||| | |||||| || |||| |||||||||||||  || ||| | |||||||||| ||| ||| |||||||||||    
T  24631132 tctcgttttggctcttaatcacccaaccctctgtagcatacaacattgcaagtttgattgttgtccgatataactttcatttcaacttaa 24631221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Complemental strand, 32674436 - 32674006
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32674436 caacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttc 32674337  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32674336 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 32674237  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  32674236 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaattgcaaaatcaacaaaccaaacccc 32674137  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32674136 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagttattttgtacaatagaggaattgaatggaaagaaagatgtg 32674037  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||| | ||||||||||    
T  32674036 tggttaaccttagtcacagaaaagaggagga 32674006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 338 - 534
Target Start/End: Original strand, 22636691 - 22636891
Alignment:
Q  338 ctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattt 433  Q
    ||||||||||| |||||||| | ||  |||||| || | ||||||||||||||||||| ||||||||||||||||||||    |||||||||||||||||    
T  22636691 ctcctactctttttccaaccaccaatttgaaaactcataaactgcaaaatcaacaaacaaaaccccacaccaatcatatgaacaacaattactttgattt 22636790  T
Q  434 tgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagg 533  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| || ||||||||||||||||  |||||||||||    
T  22636791 tgtaagaagcctaaaaagctattgcaagctattttgaacaaaagaggaattgaacggaaagaaagatatgcggttaaccttagtcacggagaagaggagg 22636890  T
Q  534 a 534  Q
    |    
T  22636891 a 22636891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 2075831 - 2075941
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  ||||||| ||||  ||||||||||||| ||||    
T  2075831 tctctgctacacttacttaattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtcggactgctgtccgatagaactttcc 2075930  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  2075931 tttcaacttaa 2075941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 12492744 - 12492854
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  ||||||| ||||  ||||||||||||| ||||    
T  12492744 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaaagccggtcggactgctgtccgatagaactttcc 12492843  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  12492844 tttcaacttaa 12492854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 16347735 - 16347845
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||| |||||||  ||||||||||| || | |||||||| | |||||||||||||| ||||    
T  16347735 tctccgctacacttacttaactctcgtgttggctcttaaccgctcaacactccgtaccatacaatatcgtcggtctgagtgttgtccgatagaactttcc 16347834  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  16347835 tttcaacttaa 16347845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 3301757 - 3301664
Alignment:
Q  18 ttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaacttaa 111  Q
    ||||| |||||||| ||||||| |||||||||||| |||||||||||||||| | ||||||||| ||||||||||||| |||||||||| ||||    
T  3301757 ttactttcgtgttggctcttaaccgcccaacacttcgtaccatacaacattgtcagtctgactactgtccgatagaactttcctttcaatttaa 3301664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 1275190 - 1275080
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||  ||||||| | |||| ||||||||| ||| |||||||||||  |||||||||||||  ||||||||||||  ||||||||||||| ||||    
T  1275190 tctctgctatgcttacttgattctcatgttgactcgtaaccgcccaacactccgtaccatacaacaacgccggtctgactgctgtccgatagaactttcc 1275091  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  1275090 tttcaacttaa 1275080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 1287946 - 1288056
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  |||| || ||||  ||| ||||||||| ||||    
T  1287946 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccgatcggactgctgttcgatagaactttcc 1288045  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  1288046 tttcaacttaa 1288056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 28977214 - 28977324
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  | || || ||||  ||||||||||||| ||||    
T  28977214 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgtcgttcggactgatgtccgatagaactttcc 28977313  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  28977314 tttcaacttaa 28977324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 10639222 - 10639112
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||| | |||||||||||  |||||||||||||  | ||||| ||||  ||| ||||||||| ||||    
T  10639222 tctctgctacacttacttgattctcatgttgactcttcaccgcccaacactccgtaccatacaacaacgtcggtcggactgctgttcgatagaactttcc 10639123  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  10639122 tttcaacttaa 10639112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 20318912 - 20318802
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| ||| |||||||  |||||||||||||  ||||||| ||||  | ||||||| ||| ||||    
T  20318912 tctctgctacacttacttgattctcatgttgactcttaaccgcgcaacactccgtaccatacaacaacgccggtcggactgctatccgatataactttcc 20318813  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  20318812 tttcaacttaa 20318802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 34272947 - 34272837
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| | ||||||||||| |||||||||||  |||||||||||||  | ||| | ||||  |||||||| |||| ||||    
T  34272947 tctctgctacacttacttgattctcatattgactcttaaccgcccaacactccgtaccatacaacaacgtcggccggactgctgtccgattgaactttcc 34272848  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  34272847 tttcaacttaa 34272837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 17340871 - 17340939
Alignment:
Q  43 cccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaacttaa 111  Q
    |||||||||||||| |||| ||||||| ||||||||||||||||||||| ||  ||| |||||||||||    
T  17340871 cccaacactttgtatcatataacattgtcggtctgactattgtccgatacaattttcttttcaacttaa 17340939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 27808 - 27709
Alignment:
Q  12 cttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaacttaa 111  Q
    ||||||| | |||| |||||  |||||| |||||||||||  |||||||||||||| | | ||| |||||||||| |||||||  |||||||||||||||    
T  27808 cttacttaattctcatgttggttcttaaccgcccaacactccgtaccatacaacatcgtctgtccgactattgtcagatagaattttcctttcaacttaa 27709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 36200707 - 36200597
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||| ||| ||||||| | ||||  ||||  |||||| |||| | ||||||||| |||||||||||||| || ||||| ||||||| |||||  ||||    
T  36200707 tctctgatacgcttacttgattctcacgttggttcttaaccgcctaccactttgtatcatacaacattgccagtttgactgttgtccggtagaattttcc 36200608  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  36200607 tttcaacttaa 36200597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24178435 - 24178387
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaaca 49  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||    
T  24178435 tctctgctacacttacttgattctcatgttgactcttaaccgcccaaca 24178387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 3394585 - 3394538
Alignment:
Q  54 gtaccatacaacattgccggtctgactattgtccgatagaaccttcct 101  Q
    |||| ||||||||||||||||||||||  ||||||||||||| |||||    
T  3394585 gtactatacaacattgccggtctgactgctgtccgatagaactttcct 3394538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 16454636 - 16454606
Alignment:
Q  1 tctctgctacacttactttactctcgtgttg 31  Q
    |||||||||||||||||||||||||||||||    
T  16454636 tctctgctacacttactttactctcgtgttg 16454606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 20844542 - 20844506
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  20844542 aggaggagggaaattaggaaatcatggttagggtttg 20844506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 23179576 - 23179540
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179576 aggaggagggaaattaggaaatcatggttagggtttg 23179540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 23179667 - 23179631
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179667 aggaggagggaaattaggaaatcatggttagggtttg 23179631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 32672927 - 32672891
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  32672927 aggaggagggaaattaggaaatcatggttagggtttg 32672891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Complemental strand, 18200913 - 18200483
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18200913 caacttaatttgtagtttgcatagctcaggggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 18200814  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18200813 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 18200714  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  18200713 attacaaataaccaaaaatcaaactaaacaaatgctcctattcttattccaaccccaaatttgaaaattcctgaactgcaaaatcaacaaaccaaacccc 18200614  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18200613 acaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgcaagctattttgtacaatagaggaattgaatggagagaaagatgtg 18200514  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||| | ||||||||||    
T  18200513 tggttaaccttagtcacataaaagaggagga 18200483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Complemental strand, 26950684 - 26950254
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    |||||||||||||||||||||||| ||| |||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26950684 caacttaatttgtagtttgcatagctcaggggatatctaagacatagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttc 26950585  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26950584 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagataacaatgcaattcaaaaagtcatcgg 26950485  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  26950484 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaacccc 26950385  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26950384 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatgcaaagaaagatgtg 26950285  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||| | ||||||||||    
T  26950284 tggttaaccttagtcacagaaaagaggagga 26950254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 107 - 534
Target Start/End: Original strand, 36092366 - 36092793
Alignment:
Q  107 cttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttg 206  Q
    ||||||||||||||||||||| ||| |||| |||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  36092366 cttaatttgtagtttgcatagctcaggggatatctaagacacaatcacattagtataatcaaccaccactgtataaattatcaccgcgagggccttcttg 36092465  T
Q  207 caacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggatt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36092466 caacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcagatt 36092565  T
Q  307 acaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaaccccaca 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  36092566 acaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcatgaactgcaaaatcaacaaaccaaaccccaca 36092665  T
Q  407 ccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtgtgg 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36092666 ccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtgtgg 36092765  T
Q  507 ttaaccttagtcacaaagaagaggagga 534  Q
    ||||||||||||||| | ||||||||||    
T  36092766 ttaaccttagtcacagaaaagaggagga 36092793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 25191304 - 25191194
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||    
T  25191304 tctctgctacacttactttactctcgtgttgactcttaacagcccaacactctgtaccatacaacatttccggtctgactattgttcgatagaaccttcc 25191205  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  25191204 tttcaacttaa 25191194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5168753 - 5168643
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| |||||||||||||||||||| ||||| ||||||| |||||| ||||  ||||||||||||||||||||||||||| |||||||||||||  ||||    
T  5168753 tctccgctacacttactttactctcatgttggctcttaaccgcccagcactccgtaccatacaacattgccggtctgactgttgtccgatagaattttcc 5168654  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  5168653 tttcagcttaa 5168643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 38850019 - 38849909
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||| | |||| ||||| |||||||||| ||  || |    
T  38850019 tctctgctacacttacttgattctcgtgttgactcttaaccgcccaacactttgtaccatacaacatcgtcggtgtgactgttgtccgataaaaaatttc 38849920  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  38849919 tttcaacttaa 38849909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 52138725 - 52138615
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| | ||||||||||| |||||||||||| |||||||||||||  ||||||| ||||  ||||||||||||| ||||    
T  52138725 tctctgctacacttacttgattctcatcttgactcttaaccgcccaacacttcgtaccatacaacaacgccggtcggactgctgtccgatagaactttcc 52138626  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  52138625 tttcaacttaa 52138615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 28245358 - 28245252
Alignment:
Q  5 tgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttc 104  Q
    |||||||||||||| | |||| |||||||| |||| |||||||||||  ||||| |||||||  ||||||||||||  ||||||||||||| ||||||||    
T  28245358 tgctacacttacttaattctcatgttgacttttaaccgcccaacactccgtaccgtacaacaacgccggtctgactgctgtccgatagaactttcctttc 28245259  T
Q  105 aacttaa 111  Q
    |||||||    
T  28245258 aacttaa 28245252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 47542069 - 47542178
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||| ||| | |||| |||||||||||||  ||||||||||  |||||||||||||  ||||||| |||   ||||||||||||| ||||    
T  47542069 tctctgctacactttctt-attctcatgttgactcttaactgcccaacactccgtaccatacaacaacgccggtcagaccgctgtccgatagaactttcc 47542167  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  47542168 tttcaacttaa 47542178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 51448066 - 51448176
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    ||||||||||||||| || | |||| ||||||||||||| |||| ||||||  |||||||||||||  | ||||| ||||  ||||||||| ||| ||||    
T  51448066 tctctgctacacttagttgattctcatgttgactcttaaccgcctaacactccgtaccatacaacaacgtcggtcggactgctgtccgatataactttcc 51448165  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  51448166 tttcaacttaa 51448176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 3186689 - 3186584
Alignment:
Q  6 gctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttca 105  Q
    |||||| |||||| | |||||||||||||||||| ||||||||||| | || |||||||||| |  |||  |||| |||||||||| ||| |||||||||    
T  3186689 gctacatttacttgattctcgtgttgactcttaatcgcccaacactatatatcatacaacatcgttggtgggactgttgtccgatataactttcctttca 3186590  T
Q  106 acttaa 111  Q
    ||||||    
T  3186589 acttaa 3186584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 43695122 - 43695230
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||| ||||||||||| | ||||||||| | ||| || | |||||||||  |||||||||||||| |||||||| |||  ||||||||||||| || |    
T  43695122 tctctgttacacttacttgattctcgtgttaattctcaaccacccaacactccgtaccatacaacatcgccggtctaactgctgtccgatagaacttttc 43695221  T
Q  101 tttcaactt 109  Q
    |||||||||    
T  43695222 tttcaactt 43695230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 53519506 - 53519419
Alignment:
Q  6 gctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgataga 93  Q
    |||||||| ||||||||||||||||| ||||||| |||  ||||||  |||| | |||||||||||| |||||||  |||||||||||    
T  53519506 gctacactaactttactctcgtgttggctcttaaccgcttaacactccgtacaacacaacattgccgatctgactgctgtccgataga 53519419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 33272385 - 33272459
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtc 75  Q
    |||||||||||||||||| | |||| |||||||||||||  ||||||||||  |||||||||||||  |||||||    
T  33272385 tctctgctacacttacttgattctcatgttgactcttaactgcccaacactccgtaccatacaacaacgccggtc 33272459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 54278945 - 54278851
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaac 95  Q
    |||||||||||||||| | | |||  |||||||||||||  ||||||||||  |||||||||||||  || |||||||||  |||||||||||||    
T  54278945 tctctgctacacttacctgattcttatgttgactcttaactgcccaacactccgtaccatacaacaacgctggtctgactgctgtccgatagaac 54278851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 396
Target Start/End: Original strand, 12807577 - 12807663
Alignment:
Q  310 aataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaacc 396  Q
    ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||  ||||||||| | ||||| ||||||||||||||    
T  12807577 aataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaactgtaaaatcaacaaacc 12807663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 27917497 - 27917387
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||| ||||||| | |||||| |||  ||||||  || || |||||||||||||||||||| |||||| |||||  ||| ||||||||  || |    
T  27917497 tctctgctacgcttacttgattctcgttttggttcttaactgcacatcactttgtaccatacaacatcgccggtgtgactgatgttcgatagaatttttc 27917398  T
Q  101 tttcaacttaa 111  Q
     ||||||||||    
T  27917397 attcaacttaa 27917387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 855012 - 854976
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  855012 aggaggagggaaattaggaaatcatggttagggtttg 854976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 6953291 - 6953327
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953291 aggaggagggaaattaggaaatcatggttagggtttg 6953327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 6953430 - 6953466
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953430 aggaggagggaaattaggaaatcatggttagggtttg 6953466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 6953812 - 6953848
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953812 aggaggagggaaattaggaaatcatggttagggtttg 6953848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 18199388 - 18199352
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  18199388 aggaggagggaaattaggaaatcatggttagggtttg 18199352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 36093873 - 36093909
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093873 aggaggagggaaattaggaaatcatggttagggtttg 36093909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 36093964 - 36094000
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093964 aggaggagggaaattaggaaatcatggttagggtttg 36094000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 36947725 - 36947761
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947725 aggaggagggaaattaggaaatcatggttagggtttg 36947761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 36947864 - 36947900
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947864 aggaggagggaaattaggaaatcatggttagggtttg 36947900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 36948003 - 36948039
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36948003 aggaggagggaaattaggaaatcatggttagggtttg 36948039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Complemental strand, 13907426 - 13906996
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    |||||||||||||||||||||||| ||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13907426 caacttaatttgtagtttgcatagctcaggggatatctaagacacattcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttc 13907327  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13907326 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 13907227  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  13907226 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaaaaaaccaaacccc 13907127  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13907126 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 13907027  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||| | ||||||||||    
T  13907026 tggttaaccttagtcacagaaaagaggagga 13906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Complemental strand, 26455071 - 26454641
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    ||||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26455071 caacttaatttttagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttc 26454972  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26454971 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 26454872  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  26454871 attacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaacccc 26454772  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26454771 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 26454672  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||| | ||||||||||    
T  26454671 tggttaaccttagtcacagaaaagaggagga 26454641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Complemental strand, 40604908 - 40604478
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40604908 caacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttc 40604809  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40604808 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatccaattcaaaaagtcatcgg 40604709  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  40604708 attacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaatttctgaactgcaaaatcaacaaaccaaacccc 40604609  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40604608 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagttgttgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 40604509  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||| | ||||||||||    
T  40604508 tggttaaccttagtcacagaaaagaggagga 40604478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 41197585 - 41197695
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||    
T  41197585 tctccgctacacttactttactctcgtgttggctcttaaccgcccaacactttgtaccatacaacattgctggtctgactgttgttcgatagaactttcc 41197684  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  41197685 tttcagcttaa 41197695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 11992463 - 11992573
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| |||||||||||||||||||||||||||||||||| |||||| ||||  |||||||||||||||||||||| ||||  ||||||||||||| ||||    
T  11992463 tctccgctacacttactttactctcgtgttgactcttaaccgcccatcactccgtaccatacaacattgccggtcagactgctgtccgatagaactttcc 11992562  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  11992563 tttcagcttaa 11992573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 2610453 - 2610343
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  ||| |||||||| |||||||||||||| ||||    
T  2610453 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccagtctgactgttgtccgatagaactttcc 2610354  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  2610353 tttcaacttaa 2610343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 36183376 - 36183266
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  ||||||| |||| |||||||||||||| ||||    
T  36183376 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtcggactgttgtccgatagaactttcc 36183277  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  36183276 tttcaacttaa 36183266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 23997535 - 23997432
Alignment:
Q  8 tacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaac 107  Q
    |||||||||||  |||||||||||||||||||  ||||||||||| |||||||||||||||| |||||| ||| |||||||||||||| ||||||||| |    
T  23997535 tacacttacttggctctcgtgttgactcttaactgcccaacacttcgtaccatacaacattgtcggtcttactgttgtccgatagaactttcctttcagc 23997436  T
Q  108 ttaa 111  Q
    ||||    
T  23997435 ttaa 23997432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 3865997 - 3865887
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| || ||||||||  |||||||||||||  | |||||||||| |||||||||||||| ||||    
T  3865997 tctctgctacacttacttgattctcatgttgactcttaaccgtccaacactccgtaccatacaacaacgtcggtctgactgttgtccgatagaactttcc 3865898  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  3865897 tttcaacttaa 3865887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 41763398 - 41763500
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| ||||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||||||||||||||||| | || | ||||||||| ||||    
T  41763398 tctccgctacacttactttactctcgtgttggttcttaaccgcccaacactctgtaccatacaacattgccggtctgattgttcttcgatagaactttcc 41763497  T
Q  101 ttt 103  Q
    |||    
T  41763498 ttt 41763500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 451979 - 452089
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  | ||||| ||||  ||||||||||||| ||||    
T  451979 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgtcggtcggactgctgtccgatagaactttcc 452078  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  452079 tttcaacttaa 452089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 8180705 - 8180595
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| || ||||||||  |||||||||||||  || |||||||||  ||||||||||||| ||||    
T  8180705 tctctgctacacttacttgattctcatgttgactcttaaccgtccaacactccgtaccatacaacaacgctggtctgactgatgtccgatagaactttcc 8180606  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  8180605 tttcaacttaa 8180595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 45367991 - 45368091
Alignment:
Q  11 acttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaactta 110  Q
    ||||||||||||||||||||| ||||||| |||||| ||||  ||||| |||||||||| |||||||||| |||||||||| ||| ||||||||| ||||    
T  45367991 acttactttactctcgtgttggctcttaatcgcccagcactccgtaccttacaacattgtcggtctgactgttgtccgataaaactttcctttcagctta 45368090  T
Q  111 a 111  Q
    |    
T  45368091 a 45368091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 38429809 - 38429707
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| |||||||||||| |||||||||||||  |||||| |||||||||||  ||||||||||||||||||||| |||||  |||| |||||||| ||||    
T  38429809 tctccgctacacttactctactctcgtgttggttcttaaccgcccaacactccgtaccatacaacattgccggtttgactgctgtctgatagaactttcc 38429710  T
Q  101 ttt 103  Q
    |||    
T  38429709 ttt 38429707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 24583963 - 24584039
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctg 77  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||    
T  24583963 tctctgctacacttacttgattctcgtgttgactcttaaccgcccaacattttgtaccatacaacatcgtcggtctg 24584039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 4807517 - 4807407
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| ||| ||||||| |||  |||||||||  | ||||| ||||  ||||||||||||| ||||    
T  4807517 tctctgctacacttacttaattctcatgttgactcttaaccgctcaacactctgtgtcatacaacaacgtcggtcggactgctgtccgatagaactttcc 4807418  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  4807417 tttcaacttaa 4807407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 3244008 - 3244114
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| |||||||||||||  | ||||||||  ||||||| |||||  ||||||| ||||  ||||||||||||| ||||    
T  3244008 tctctgctacacttacttgattctcatgttgactcttaactgtccaacactccgtaccattcaacaacgccggtcggactgctgtccgatagaactttcc 3244107  T
Q  101 tttcaac 107  Q
    |||||||    
T  3244108 tttcaac 3244114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 6238132 - 6238221
Alignment:
Q  22 tctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaacttaa 111  Q
    |||||||||||||||||| | |||||||||  |||||||||||||| | | |||| ||| |||||||||||||  ||| |||||||||||    
T  6238132 tctcgtgttgactcttaaccacccaacactccgtaccatacaacatcgtcagtctaactgttgtccgatagaattttcttttcaacttaa 6238221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 12734609 - 12734521
Alignment:
Q  22 tctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaacttaa 111  Q
    |||| ||||| |||| || ||||||||||| ||||||||||||||| |  ||| ||||| |||| ||||||||| |||||||||||||||    
T  12734609 tctcatgttggctctaaaccgcccaacactctgtaccatacaacatcgatggtttgactgttgt-cgatagaactttcctttcaacttaa 12734521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 32287361 - 32287325
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32287361 aggaggatggaaattaggaaatcatggttagggtttg 32287325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 32443527 - 32443471
Alignment:
Q  13 ttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattg 69  Q
    |||||| | ||||||||||| |||||| | ||||||||| |||||||||||||||||    
T  32443527 ttacttgattctcgtgttgattcttaaccacccaacactctgtaccatacaacattg 32443471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 30743540 - 30743438
Alignment:
Q  9 acacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaact 108  Q
    |||||||||| | |||||||||| || |||| |||| ||| ||  |||||||||||||| | |||||||||   | |||| || ||| ||||||||||||    
T  30743540 acacttacttgattctcgtgttggcttttaatcgcctaactctccgtaccatacaacatcgtcggtctgaccgctatccggtaaaactttcctttcaact 30743441  T
Q  109 taa 111  Q
    |||    
T  30743440 taa 30743438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 13899944 - 13899908
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13899944 aggaggagggaaattaggaaatcatggttagggtttg 13899908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 13905842 - 13905806
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13905842 aggaggagggaaattaggaaatcatggttagggtttg 13905806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 26453570 - 26453534
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  26453570 aggaggagggaaattaggaaatcatggttagggtttg 26453534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 35433139 - 35433175
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  35433139 aggaggagggaaattaggaaatcatggttagggtttg 35433175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 40603405 - 40603369
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  40603405 aggaggagggaaattaggaaatcatggttagggtttg 40603369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Original strand, 35595510 - 35595940
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35595510 caacttaatttgtagtttgcatagctcaggggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 35595609  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  35595610 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaggagatgataataaattagatagcaatgcaattcaaaaagtcaacgg 35595709  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||    
T  35595710 attacaaataaccaaaaatcaaactaaacaaatgctcccactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaatccc 35595809  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35595810 acaccaatcatataacaattattttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 35595909  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||| | ||||||||||    
T  35595910 tggttaaccttagtcacagaaaagaggagga 35595940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 104 - 534
Target Start/End: Original strand, 2045809 - 2046239
Alignment:
Q  104 caacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttc 203  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2045809 caacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttc 2045908  T
Q  204 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2045909 ttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagcaatccaattcaaaaagtcatcgg 2046008  T
Q  304 attacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaacatgaaaattcctgaactgcaaaatcaacaaaccaaacccc 403  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  2046009 attacaaataaccaaaaatcaaactaaataaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaaaataaacaaaccaaacccc 2046108  T
Q  404 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2046109 acaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtg 2046208  T
Q  504 tggttaaccttagtcacaaagaagaggagga 534  Q
    |||||||||||||||||| | ||||||||||    
T  2046209 tggttaaccttagtcacagaaaagaggagga 2046239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 32083102 - 32083212
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||| |||||||| ||||    
T  32083102 tctccgctacacatactttactctcgtgttgactcttaaccgcccaacactctgtaccatacaacattgtcggtctgactgttgtctgatagaactttcc 32083201  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  32083202 tttcagcttaa 32083212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 696194 - 696084
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| |||||||||||||||||||||||||| ||||||| | |||||||||  |||||||||||||||||||||||||||  ||||||||||||| ||||    
T  696194 tctccgctacacttactttactctcgtgttggctcttaaccacccaacactccgtaccatacaacattgccggtctgactgctgtccgatagaactttcc 696095  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  696094 tttcagcttaa 696084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 15085859 - 15085749
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| |||||||||||||||||||||||||| ||||||| |||||||||||  ||||||||||||||||||||| |||||  |||| |||||||| ||||    
T  15085859 tctccgctacacttactttactctcgtgttggctcttaaccgcccaacactccgtaccatacaacattgccggtttgactgctgtctgatagaactttcc 15085760  T
Q  101 tttcaacttaa 111  Q
    ||||| |||||    
T  15085759 tttcagcttaa 15085749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 30202487 - 30202597
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| ||||||||||| ||||||| ||||||  ||||||| |||| |||||||||||||| ||||    
T  30202487 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactctgtaccacacaacaacgccggtcggactgttgtccgatagaactttcc 30202586  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  30202587 tttcaacttaa 30202597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 8671845 - 8671735
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| || |||||| || |||||||||||||  |||||||||||| ||||| |||||||| ||||    
T  8671845 tctctgctacacttacttgattctcatgttgactcttaaccgtccaacatttcgtaccatacaacaacgccggtctgactgttgtctgatagaactttcc 8671746  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  8671745 tttcaacttaa 8671735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 9592659 - 9592549
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| |||||| |||||| |||||||||||  |||||||||||||  | | ||||||||||||||||||||||| ||||    
T  9592659 tctctgctacacttacttgattctcatgttgattcttaaccgcccaacactccgtaccatacaacaacgtcagtctgactattgtccgatagaactttcc 9592560  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  9592559 tttcaacttaa 9592549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 8391697 - 8391593
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtacc--atacaacattgccggtctgactattgtccgatagaacctt 98  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||  |||| |||||||||||||||||  ||||||||| ||| ||    
T  8391697 tctccgctacacttactttactctcgtgttgactcttaaccgcccaacactctgtaccatatacgacattgccggtctgactgctgtccgataaaacatt 8391598  T
Q  99 ccttt 103  Q
    |||||    
T  8391597 ccttt 8391593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 1210670 - 1210560
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||||||||  |||||||  |||  ||||||||||||| ||||    
T  1210670 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtcgaactgctgtccgatagaactttcc 1210571  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  1210570 tttcaacttaa 1210560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 22090019 - 22089909
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||| ||||||  ||||||| ||||  ||||||||||||| ||||    
T  22090019 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccacacaacaacgccggtcggactgctgtccgatagaactttcc 22089920  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  22089919 tttcaacttaa 22089909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 43240738 - 43240848
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| | |||||||||  ||| |||||||||  ||||||| ||||  ||||||||||||| ||||    
T  43240738 tctctgctacacttacttgattctcatgttgactcttaacctcccaacactccgtatcatacaacaacgccggtcggactgctgtccgatagaactttcc 43240837  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  43240838 tttcaacttaa 43240848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 51441122 - 51441232
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    ||||||||||||| |||| | |||| ||||||||||||| |||||||||||  |||||||||||||  | ||||| ||||  ||||||||||||| ||||    
T  51441122 tctctgctacactcacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgtcggtcggactgctgtccgatagaactttcc 51441221  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  51441222 tttcaacttaa 51441232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 51601977 - 51601873
Alignment:
Q  7 ctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaa 106  Q
    |||||||||||| | |||| ||||||||||||| | |||||||||  |||||||||||||  ||||||| ||||| ||||||||||||| ||| ||||||    
T  51601977 ctacacttacttgattctcatgttgactcttaaccacccaacactccgtaccatacaacaacgccggtcggactactgtccgatagaactttcatttcaa 51601878  T
Q  107 cttaa 111  Q
    |||||    
T  51601877 cttaa 51601873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 49347754 - 49347860
Alignment:
Q  5 tgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttc 104  Q
    |||||||||||||| | |||| ||||||||||||| |||||||||||| |||||||||||||  |  |||| ||||  |||||||||||   ||||||||    
T  49347754 tgctacacttacttgattctcatgttgactcttaaccgcccaacacttcgtaccatacaacaaggttggtcggactgctgtccgatagatttttcctttc 49347853  T
Q  105 aacttaa 111  Q
    |||||||    
T  49347854 aacttaa 49347860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 37463257 - 37463335
Alignment:
Q  34 tcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcctttcaacttaat 112  Q
    |||||| | ||||||||| ||||||||||||||||||  |||||||| ||||| |||||||  ||||||||||||||||    
T  37463257 tcttaaccacccaacactctgtaccatacaacattgctagtctgactgttgtctgatagaattttcctttcaacttaat 37463335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3192131 - 3192071
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccata 61  Q
    |||||||||||||||||| | |||| ||||||||||||| ||||||||||| |||||||||    
T  3192131 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactctgtaccata 3192071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3200949 - 3200889
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccata 61  Q
    |||||||||||||||||| | |||| ||||||||||||| ||||||||||| |||||||||    
T  3200949 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactctgtaccata 3200889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3209786 - 3209726
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccata 61  Q
    |||||||||||||||||| | |||| ||||||||||||| ||||||||||| |||||||||    
T  3209786 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacactctgtaccata 3209726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34792706 - 34792768
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaa 64  Q
    |||||||||||||| ||| | |||||||||||||||||| |||||||||||  |||||||||||    
T  34792706 tctctgctacactt-cttgattctcgtgttgactcttaaccgcccaacactccgtaccatacaa 34792768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 52589782 - 52589715
Alignment:
Q  269 aaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaat 336  Q
    ||||||||||||||||||||||||||| || |   |||||||||||| ||||||||||  ||||||||    
T  52589782 aaattagatagcaatgcaattcaaaaactcgttacattacaaataacaaaaaatcaaatcaaacaaat 52589715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 7921810 - 7921777
Alignment:
Q  43 cccaacactttgtaccatacaacattgccggtct 76  Q
    ||||||||||||||||||||||||||| ||||||    
T  7921810 cccaacactttgtaccatacaacattgtcggtct 7921777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 2051974 - 2052010
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  2051974 aggaggagggaaattaggaaatcatggttagggtttg 2052010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 4001820 - 4001848
Alignment:
Q  11 acttactttactctcgtgttgactcttaa 39  Q
    |||||||||||||||||||||||||||||    
T  4001820 acttactttactctcgtgttgactcttaa 4001848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32231311 - 32231359
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaaca 49  Q
    ||||| |||||||||||| | |||||||||||| ||||| |||||||||    
T  32231311 tctctactacacttacttgattctcgtgttgacccttaaccgcccaaca 32231359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 39514207 - 39514243
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  39514207 aggaggagggaaattaggaaatcatggttagggtttg 39514243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 45507254 - 45507290
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507254 aggaggagggaaattaggaaatcatggttagggtttg 45507290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 45507403 - 45507439
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507403 aggaggagggaaattaggaaatcatggttagggtttg 45507439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 49791612 - 49791648
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  49791612 aggaggagggaaattaggaaatcatggttagggtttg 49791648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 82646 - 82536
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||| ||| ||||||||| | |||| ||||| ||||||| |||||||||||  ||||||||||| || | |||||||||| |||||||||||||| ||||    
T  82646 tctccgctgcacttacttgattctcatgttggctcttaaccgcccaacactccgtaccatacaagatcgtcggtctgactgttgtccgatagaactttcc 82547  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  82546 tttcaacttaa 82536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 31393 - 31283
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | |||| ||||||||||||| | |||||||||  ||||| |||||||  ||||||||||||  ||| ||||||||| ||||    
T  31393 tctctgctacacttacttgattctcatgttgactcttaaccacccaacactccgtaccgtacaacaccgccggtctgactgctgttcgatagaactttcc 31294  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  31293 tttcaacttaa 31283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 2627 - 2737
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||||||||| | | || ||||||||||||| |||||||||||   ||||||||||||  | | ||||||||  ||||||||||||| ||||    
T  2627 tctctgctacacttacttgattatcatgttgactcttaaccgcccaacactccataccatacaacaacgtcagtctgactgctgtccgatagaactttcc 2726  T
Q  101 tttcaacttaa 111  Q
    |||||||||||    
T  2727 tttcaacttaa 2737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25802 - 25852
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacact 51  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  25802 tctctgctacacttacttgattctcatgttgactcttaaccgcccaacact 25852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 11955 - 12065
Alignment:
Q  1 tctctgctacacttactttactctcgtgttgactcttaaacgcccaacactttgtaccatacaacattgccggtctgactattgtccgatagaaccttcc 100  Q
    |||||||||||| ||||| | |||| ||||||||||||  ||||||||| |||||||||| |||||   ||| ||||| |  || |||||| ||| ||||    
T  11955 tctctgctacacatacttgattctcatgttgactcttacccgcccaacattttgtaccatgcaacaactccgttctgattgctgaccgataaaactttcc 12054  T
Q  101 tttcaacttaa 111  Q
    ||| |||||||    
T  12055 ttttaacttaa 12065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 41458 - 41422
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||| ||||||||||||||||||||||||||||    
T  41458 aggaggatggaaattaggaaatcatggttagggtttg 41422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 41276 - 41240
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41276 aggaggagggaaattaggaaatcatggttagggtttg 41240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 41367 - 41331
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41367 aggaggagggaaattaggaaatcatggttagggtttg 41331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 36168 - 36132
Alignment:
Q  528 aggaggatagaaattaggaaatcatggttagggtttg 564  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36168 aggaggagggaaattaggaaatcatggttagggtttg 36132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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