View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11978_low_2 (Length: 488)
Name: NF11978_low_2
Description: NF11978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11978_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 219 - 476
Target Start/End: Complemental strand, 54713461 - 54713200
Alignment:
| Q |
219 |
atttttcgagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaata-tataaaataatcttatgaaa |
317 |
Q |
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| T |
54713461 |
attttttgagtgattatacatgaac---caccctatgtggctaccactctttgtacaccttccacgtgtctaaaaaaaaatataaaataatcttatgaaa |
54713365 |
T |
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| Q |
318 |
-gtgccatctcataaaagaagacnnnnnnnnn-----ttaagtcccaaccctcagcttctctaaaaacggatctcttctctctccccaccaccatccatt |
411 |
Q |
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| T |
54713364 |
agtgccatctcataaaagaagacaaaaaaaaaaaaaattaagtcccaaccctcatcttctctaaaaacggatctcttctctctccccaccaccatacatt |
54713265 |
T |
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| Q |
412 |
gccatcgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctct |
476 |
Q |
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| T |
54713264 |
gccatcgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctct |
54713200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 54713884 - 54713732
Alignment:
| Q |
1 |
caatgaagaattcaaatatagaacgttacggcaattgtttgggttcatcgttatattaaatttattccattaatactaatatgctagatgaatggtcaat |
100 |
Q |
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| T |
54713884 |
caatgaagaattccaatatagaacgttacggcaattgtttgcgttcatcgttatattaaatttattccattaatactaatatgctagatgaatggtcaat |
54713785 |
T |
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| Q |
101 |
tttactatgttggagtcaacatctgatgtgttaaatcatatctaccaatcaaa |
153 |
Q |
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| T |
54713784 |
tttactatgttggagtcaacatctgatgtgttaaatcatatctaccaatcaaa |
54713732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 54679973 - 54679876
Alignment:
| Q |
56 |
ttaaatttattccattaatactaatatgctagatgaatggtcaattttactatgttggagtcaacatctgatgtgttaaatcatatctaccaatcaaa |
153 |
Q |
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| T |
54679973 |
ttaaatttattacattaatactacaatgctagatgaagggtcaattttactatgttgtactcaacatctgatgtgttaaatcatatctaccaatcaaa |
54679876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 54713517 - 54713475
Alignment:
| Q |
181 |
tcaaaagggttgaaatctagtttataaatattgcaacaatttt |
223 |
Q |
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| T |
54713517 |
tcaaaagggttgaaatctagtttataaatattgcaacaatttt |
54713475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 54680184 - 54680135
Alignment:
| Q |
7 |
agaattcaaatatagaacgttacggcaattgtttgggttcatcgttatat |
56 |
Q |
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| T |
54680184 |
agaattccaatatagaactttacggcaattgtttgggttcatcgttatat |
54680135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 54679886 - 54679839
Alignment:
| Q |
175 |
taccaatcaaaagggttgaaatctagtttataaatattgcaacaatttt |
223 |
Q |
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| T |
54679886 |
taccaatcaaaagg-ttgaaatctagtttataaaaattgcaataatttt |
54679839 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 226 - 476
Target Start/End: Original strand, 32971718 - 32971965
Alignment:
| Q |
226 |
gagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaatatataaaataatcttatgaaagtgccatc |
325 |
Q |
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| T |
32971718 |
gagtggttatacatgaac---catcctatgtggctaccactctttgtacacctttcacatgtctaagaaaaatataaa-taatcttatgaaagtgccagc |
32971813 |
T |
|
| Q |
326 |
tcataaaagaagacnnnnnnnnnttaagtcccaaccctcagcttctctaaaaacggatctc--ttctctctccccaccaccatccattgccatcgccgca |
423 |
Q |
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| T |
32971814 |
tcataaaagaagacaaaaaaaaattaagtcccaaccctt-gcttctctaaaaacagatctctcttctctctcccaaccgccatccactgccaccgccgca |
32971912 |
T |
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| Q |
424 |
aactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctct |
476 |
Q |
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| T |
32971913 |
aactccgaccacccctccgccccaactccgatttcaacaactcaactctctct |
32971965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 226 - 476
Target Start/End: Complemental strand, 41665254 - 41664998
Alignment:
| Q |
226 |
gagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaata-tataaaataatcttatgaaagtgccat |
324 |
Q |
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|||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || |
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| T |
41665254 |
gagtggttatacatgaac---catcctatgtggctaccactctttgtacaccttccacatgtctaaaaaaaaatataaaataatcttatgaaagtgtcag |
41665158 |
T |
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| Q |
325 |
ctcataaaagaagacnnnnnnnnnt-------taagtcccaaccctcagcttctctaaaaacggatctct-tctctctccccaccaccatccattgccat |
416 |
Q |
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| T |
41665157 |
ctcataaaagaagacaaaaaaaaataaaaaattaagtcctaaccctccgcttctctaaaaacagatctctctttctctccccaccgccatccactgccac |
41665058 |
T |
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| Q |
417 |
cgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctct |
476 |
Q |
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| T |
41665057 |
tgccgcaaactccgaccacccctccgccccagctccgatttcaacaactcaactctctct |
41664998 |
T |
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