View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11978_low_3 (Length: 345)

Name: NF11978_low_3
Description: NF11978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11978_low_3
NF11978_low_3
[»] chr3 (10 HSPs)
chr3 (165-239)||(4737780-4737854)
chr3 (169-236)||(5578150-5578217)
chr3 (165-239)||(32077475-32077549)
chr3 (169-244)||(46835540-46835615)
chr3 (165-239)||(51646882-51646956)
chr3 (165-232)||(45640689-45640756)
chr3 (180-239)||(15451633-15451692)
chr3 (202-235)||(8508676-8508709)
chr3 (312-345)||(11436582-11436615)
chr3 (317-345)||(43997606-43997634)
[»] chr7 (10 HSPs)
chr7 (105-168)||(45824713-45824776)
chr7 (165-244)||(27965220-27965301)
chr7 (165-229)||(45824591-45824655)
chr7 (10-51)||(45829385-45829429)
chr7 (312-345)||(27678969-27679002)
chr7 (205-242)||(45823542-45823579)
chr7 (181-240)||(18196128-18196188)
chr7 (165-240)||(26000017-26000093)
chr7 (317-345)||(34051839-34051867)
chr7 (317-345)||(42547992-42548020)
[»] chr8 (4 HSPs)
chr8 (165-239)||(14836396-14836470)
chr8 (165-244)||(30850194-30850273)
chr8 (165-239)||(27229234-27229309)
chr8 (222-260)||(5657750-5657788)
[»] chr2 (5 HSPs)
chr2 (165-239)||(24538234-24538308)
chr2 (185-239)||(28296914-28296968)
chr2 (198-239)||(7828940-7828981)
chr2 (185-229)||(22142305-22142349)
chr2 (312-345)||(18073821-18073854)
[»] chr6 (2 HSPs)
chr6 (164-241)||(9852098-9852175)
chr6 (185-239)||(29279773-29279827)
[»] chr4 (9 HSPs)
chr4 (165-229)||(47965535-47965599)
chr4 (195-241)||(30179071-30179117)
chr4 (165-222)||(52525933-52525990)
chr4 (193-244)||(14866628-14866679)
chr4 (105-168)||(14866532-14866595)
chr4 (108-167)||(43046094-43046153)
chr4 (312-345)||(18360571-18360604)
chr4 (312-345)||(36602325-36602358)
chr4 (312-345)||(37318095-37318128)
[»] chr1 (5 HSPs)
chr1 (165-244)||(20602210-20602289)
chr1 (196-239)||(29308693-29308736)
chr1 (181-238)||(5933836-5933893)
chr1 (312-345)||(43667916-43667949)
chr1 (317-345)||(25580766-25580794)
[»] scaffold0596 (1 HSPs)
scaffold0596 (180-260)||(1690-1767)
[»] scaffold0071 (1 HSPs)
scaffold0071 (180-239)||(10499-10558)


Alignment Details
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 4737780 - 4737854
Alignment:
Q  165 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 239  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4737780 ttggagccaaaaccattagaattagggttggcacaatttgttagcaatgttattcatattagaaataagtatgat 4737854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 5578150 - 5578217
Alignment:
Q  169 agccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtat 236  Q
    |||||||||||| ||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||    
T  5578150 agccaaaaccatcagaattagggttggcacaaattgttaacaatgttattcatattagaaataagtat 5578217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 32077475 - 32077549
Alignment:
Q  165 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 239  Q
    |||||||||||||||| |  |||||| |||||| || ||||||||||||||||||||||||||||||||||||||    
T  32077475 ttggagccaaaaccatcaagattagggttggcataaattgttagcaatgttattcatattagaaataagtatgat 32077549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 46835540 - 46835615
Alignment:
Q  169 agccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgatatgat 244  Q
    |||||||||||| |  |||||| ||| ||||||||||||  | |||||||||||||||||||||||||||||||||    
T  46835540 agccaaaaccatcaagattagggttgacacaatttgttaatattgttattcatattagaaataagtatgatatgat 46835615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 51646956 - 51646882
Alignment:
Q  165 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 239  Q
    |||||||||||| ||| |  |||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  51646956 ttggagccaaaaacatcaagattagggttgacacaaattgttaacaatgttattcatattagaaataagtatgat 51646882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 45640689 - 45640756
Alignment:
Q  165 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataa 232  Q
    ||||||||||||||||||| |||||| ||| |||||||||||| || ||||||| |||||||| ||||    
T  45640689 ttggagccaaaaccattaggattagggttgacacaatttgttaacattgttattgatattagagataa 45640756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 15451692 - 15451633
Alignment:
Q  180 ttagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 239  Q
    ||||||||||| |||| ||| ||||||||||||||||   ||||||||||||||| ||||    
T  15451692 ttagaattagggttggtacactttgttagcaatgttagctatattagaaataagtttgat 15451633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 8508676 - 8508709
Alignment:
Q  202 ttgttagcaatgttattcatattagaaataagta 235  Q
    |||||| |||||||||||||||||||||||||||    
T  8508676 ttgttaacaatgttattcatattagaaataagta 8508709  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Complemental strand, 11436615 - 11436582
Alignment:
Q  312 agtgattagaactcacacaatttaattgtggaga 345  Q
    |||| |||||||||||||||||||||||||||||    
T  11436615 agtggttagaactcacacaatttaattgtggaga 11436582  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 43997606 - 43997634
Alignment:
Q  317 ttagaactcacacaatttaattgtggaga 345  Q
    |||||||||||||||||||||||||||||    
T  43997606 ttagaactcacacaatttaattgtggaga 43997634  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 45824776 - 45824713
Alignment:
Q  105 ggttgtaaatgacataggaaatggaacaacatttactaatagcatttgaatctgaattgattgg 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45824776 ggttgtaaatgacataggaaatggaacaacatttactaatagcatttgaatctgaactgattgg 45824713  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 27965220 - 27965301
Alignment:
Q  165 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttatt--catattagaaataagtatgatatgat 244  Q
    |||||||||||||||| ||||||||| ||||||||| |||||| ||||||||||   |||||||||||||||||||||||||    
T  27965220 ttggagccaaaaccataagaattagggttggcacaaattgttaacaatgttatttatatattagaaataagtatgatatgat 27965301  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 45824655 - 45824591
Alignment:
Q  165 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaa 229  Q
    ||||||||||||| || ||||||||| ||||||||| |||||||||||| ||||  |||||||||    
T  45824655 ttggagccaaaactatcagaattagggttggcacaaattgttagcaatgctattgctattagaaa 45824591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 45829429 - 45829385
Alignment:
Q  10 gagcagagagaaaatcgaaaatgaa---aagagctgaggtagagg 51  Q
    |||||||||||||||||||||||||   |||||||||||||||||    
T  45829429 gagcagagagaaaatcgaaaatgaaaagaagagctgaggtagagg 45829385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Original strand, 27678969 - 27679002
Alignment:
Q  312 agtgattagaactcacacaatttaattgtggaga 345  Q
    ||||||||||||||||| ||||||||||||||||    
T  27678969 agtgattagaactcacataatttaattgtggaga 27679002  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 45823579 - 45823542
Alignment:
Q  205 ttagcaatgttattcatattagaaataagtatgatatg 242  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  45823579 ttagcaatgttattgctattagaaataagtatgatatg 45823542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 18196188 - 18196128
Alignment:
Q  181 tagaattaggcttggcacaatttgttagcaatgttatt-catattagaaataagtatgata 240  Q
    |||||||||| |||||||| |||||||||||| |||||   | ||||||||||||||||||    
T  18196188 tagaattagggttggcacactttgttagcaattttattattttttagaaataagtatgata 18196128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 26000093 - 26000017
Alignment:
Q  165 ttggagccaaaaccatt-agaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgata 240  Q
    ||||||||||||||||| || |||||| ||| |||| ||| ||| || |||||||  ||||||||||||||| ||||    
T  26000093 ttggagccaaaaccatttaggattagggttgtcacattttcttaacattgttattagtattagaaataagtaagata 26000017  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 34051839 - 34051867
Alignment:
Q  317 ttagaactcacacaatttaattgtggaga 345  Q
    |||||||||||||||||||||||||||||    
T  34051839 ttagaactcacacaatttaattgtggaga 34051867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 42547992 - 42548020
Alignment:
Q  317 ttagaactcacacaatttaattgtggaga 345  Q
    |||||||||||||||||||||||||||||    
T  42547992 ttagaactcacacaatttaattgtggaga 42548020  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 14836470 - 14836396
Alignment:
Q  165 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 239  Q
    |||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  14836470 ttggagccaaaaccataagaattagggttggcacaaattgttaacaatgttattcatattagaaataagtatgat 14836396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 30850194 - 30850273
Alignment:
Q  165 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgatatgat 244  Q
    |||||||||||| |||||  |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  30850194 ttggagccaaaatcattaagattagggttggcacaattttttagcagtgttattcatattagaaataagtatgatatgat 30850273  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 27229309 - 27229234
Alignment:
Q  165 ttggagccaaaaccatta-gaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 239  Q
    |||||||||||| ||||| |||||||| ||| | ||| || ||| ||||| |||||||||||||||||||||||||    
T  27229309 ttggagccaaaatcattaagaattagggttgacgcaaattattaacaatgctattcatattagaaataagtatgat 27229234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 5657788 - 5657750
Alignment:
Q  222 attagaaataagtatgatatgattagaaataagtatgat 260  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  5657788 attagatataagtatgatatgattagatataagtatgat 5657750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 24538308 - 24538234
Alignment:
Q  165 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 239  Q
    ||||||||||||| ||||| |||||| ||| |||||||||||| || ||||||||||||||||||||||||||||    
T  24538308 ttggagccaaaactattaggattagggttgacacaatttgttaacattgttattcatattagaaataagtatgat 24538234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 28296914 - 28296968
Alignment:
Q  185 attaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 239  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||    
T  28296914 attagggttggcacaatttgttaacaatgctattcatattagaaataagtatgat 28296968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 7828940 - 7828981
Alignment:
Q  198 caatttgttagcaatgttattcatattagaaataagtatgat 239  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  7828940 caatttgttaacattgttattcatattagaaataagtatgat 7828981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 22142305 - 22142349
Alignment:
Q  185 attaggcttggcacaatttgttagcaatgttattcatattagaaa 229  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||    
T  22142305 attagggttggcacaatttgttaacaatgctattcatattagaaa 22142349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Complemental strand, 18073854 - 18073821
Alignment:
Q  312 agtgattagaactcacacaatttaattgtggaga 345  Q
    ||||| ||||||||||||||||||||||||||||    
T  18073854 agtgactagaactcacacaatttaattgtggaga 18073821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 9852175 - 9852098
Alignment:
Q  164 attggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgatat 241  Q
    |||||||||||||  ||||| |||||| |||||||||||| |||||| ||||||||||||||||||||||||| ||||    
T  9852175 attggagccaaaaagattaggattagggttggcacaattttttagcagtgttattcatattagaaataagtataatat 9852098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 29279827 - 29279773
Alignment:
Q  185 attaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 239  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||    
T  29279827 attagggttggcacaatttgttaacaatgctattcatattagaaataagtatgat 29279773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 47965535 - 47965599
Alignment:
Q  165 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaa 229  Q
    |||||||||||||||| || |||||| ||||||||| ||||||||||||||||||||||||||||    
T  47965535 ttggagccaaaaccatcaggattagggttggcacaaattgttagcaatgttattcatattagaaa 47965599  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 30179071 - 30179117
Alignment:
Q  195 gcacaatttgttagcaatgttattcatattagaaataagtatgatat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30179071 gcacaatttgttagcaatgttattcatattagaaataagtatgatat 30179117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 52525933 - 52525990
Alignment:
Q  165 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcata 222  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||    
T  52525933 ttggagccaaaaccattagaattagggttgacacaaattgttagcaatgttattcata 52525990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 14866628 - 14866679
Alignment:
Q  193 tggcacaatttgttagcaatgttattcatattagaaataagtatgatatgat 244  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  14866628 tggcacaatttgttaacattgttattcatattagaaataagtatgatatgat 14866679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 14866532 - 14866595
Alignment:
Q  105 ggttgtaaatgacataggaaatggaacaacatttactaatagcatttgaatctgaattgattgg 168  Q
    |||||||||||| ||||||||||||| |||||||| ||||  |||||||||||||| |||||||    
T  14866532 ggttgtaaatgatataggaaatggaaaaacatttattaatcacatttgaatctgaactgattgg 14866595  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 43046094 - 43046153
Alignment:
Q  108 tgtaaatgacataggaaatggaacaacatttactaatagcatttgaatctgaattgattg 167  Q
    ||||||| |||||||||||||||||||||||| ||| | ||||||||| |||| ||||||    
T  43046094 tgtaaatcacataggaaatggaacaacatttattaacaacatttgaatttgaactgattg 43046153  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Complemental strand, 18360604 - 18360571
Alignment:
Q  312 agtgattagaactcacacaatttaattgtggaga 345  Q
    |||| |||||||||||||||||||||||||||||    
T  18360604 agtggttagaactcacacaatttaattgtggaga 18360571  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Original strand, 36602325 - 36602358
Alignment:
Q  312 agtgattagaactcacacaatttaattgtggaga 345  Q
    |||| |||||||||||||||||||||||||||||    
T  36602325 agtggttagaactcacacaatttaattgtggaga 36602358  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Original strand, 37318095 - 37318128
Alignment:
Q  312 agtgattagaactcacacaatttaattgtggaga 345  Q
    |||| |||||||||||||||||||||||||||||    
T  37318095 agtggttagaactcacacaatttaattgtggaga 37318128  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 20602289 - 20602210
Alignment:
Q  165 ttggagccaaaaccattagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgatatgat 244  Q
    |||||||||||||||| |  || ||| ||||||||| |||||| |||||||||||||||||||| ||| |||||||||||    
T  20602289 ttggagccaaaaccatcaagatgagggttggcacaaattgttaacaatgttattcatattagaattaaatatgatatgat 20602210  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 29308736 - 29308693
Alignment:
Q  196 cacaatttgttagcaatgttattcatattagaaataagtatgat 239  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  29308736 cacaatttgttaacaatgttattcatattagaaataagtatgat 29308693  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 5933836 - 5933893
Alignment:
Q  181 tagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatga 238  Q
    |||||||||| |||||||| |||||||||||| |||||||||| |||||||| |||||    
T  5933836 tagaattagggttggcacactttgttagcaatattattcatatcagaaataaatatga 5933893  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Original strand, 43667916 - 43667949
Alignment:
Q  312 agtgattagaactcacacaatttaattgtggaga 345  Q
    |||| |||||||||||||||||||||||||||||    
T  43667916 agtggttagaactcacacaatttaattgtggaga 43667949  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Complemental strand, 25580794 - 25580766
Alignment:
Q  317 ttagaactcacacaatttaattgtggaga 345  Q
    |||||||||||||||||||||||||||||    
T  25580794 ttagaactcacacaatttaattgtggaga 25580766  T

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Target: scaffold0596 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 1690 - 1767
Alignment:
Q  180 ttagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgatatgattagaaataagtatgat 260  Q
    |||| |||||| |||||||||  ||||| || |||||||||||||||||||||  | | ||||||||||||||||||||||    
T  1690 ttaggattagggttggcacaaaatgttaacattgttattcatattagaaataa--aag-tatgattagaaataagtatgat 1767  T

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Target: scaffold0071 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 10499 - 10558
Alignment:
Q  180 ttagaattaggcttggcacaatttgttagcaatgttattcatattagaaataagtatgat 239  Q
    ||||||||||| |||| ||| ||||||||||||||||   ||||||||||||||| ||||    
T  10499 ttagaattagggttggtacactttgttagcaatgttagctatattagaaataagtttgat 10558  T

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