View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11978_low_4 (Length: 318)
Name: NF11978_low_4
Description: NF11978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11978_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 41026942 - 41026654
Alignment:
| Q |
18 |
aaaattttcacaactcgtgcaaggaaccaagaagaaataacccctgaacttcgtcatcatacttaatacttgtagcagaaagttgattcatagttccttg |
117 |
Q |
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| T |
41026942 |
aaaatttccacaactcgtgcaaggaaccaagaagaaataacccctgaacttcgtcatcatacttaatacttgtagcagaaagttgattcatagttccttg |
41026843 |
T |
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| Q |
118 |
gaaagtaatgaaatgatatgcgtaatccatcttgaggcgtcgaacttaacatcttcattatcaaatacatcttgttattaaccgtctattttgcatacat |
217 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41026842 |
gaaagtaatgaaatgatatgcctaatccatcttgaggcgtcaaacttaacatcttcattatcaaatacatcttgttattaaccgtctattttgcatacat |
41026743 |
T |
|
| Q |
218 |
ccacacaaacttatcgcatacatgcctaagtagtagggtatgttgatcaatagtcttatcaccaagattctctacatcaaacacaggtt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41026742 |
ccacacaaacttatcgcatacatgcctaagtagtagggtatgttgatcaatagtcttatcaccaagattctctacatcaaacacaggtt |
41026654 |
T |
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