View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11979_high_1 (Length: 898)
Name: NF11979_high_1
Description: NF11979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11979_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 45197864 - 45197473
Alignment:
| Q |
11 |
gtgagatgaactagcaagtttgacctgtgtgtaagggatccatatattggtgacacattatcttacttgaattgatttgatannnnnnnnnnnnnnnnna |
110 |
Q |
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| T |
45197864 |
gtgagctgaactagcaagtttgacctgtgtgtaagggatccatatattggtgacacattatcttacttgaattgatttgatattttttttttttgtttta |
45197765 |
T |
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| Q |
111 |
catggattagaggaataatataattaaacaacatcattaattaatactactgtattttagtttggctaaactctcttccttgttgagatgtcaacatatt |
210 |
Q |
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| T |
45197764 |
catggattagaggaataatataattaaacaacatcattaattaatactactgtattttagtttggctatactctcttccttgttgagatgtcaacatatt |
45197665 |
T |
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| Q |
211 |
tattgacatttcatctgaaatttaaatgcaattagcaattaggtgattgaatacaaaattataggctttggaaggtaaatttg---------gatttgtt |
301 |
Q |
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| T |
45197664 |
tattgacatttcatctgaaatttaaatgcaattagcaattaggtgattgaatacaaaattataggctttggaaggtaaatttggattccccggatttgtt |
45197565 |
T |
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| Q |
302 |
actttatctgcatgtaatttgtaaagctaaaataaaaagagggttccgtaacaaacggttttcaacttataaggaacatcccttccttcaaa |
393 |
Q |
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| T |
45197564 |
actttatctgcatgtaatttgtaaagctaaaataaaaagagggttccgtaacaaacggttttcaacttataaggaacatcccttccttcaaa |
45197473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 651 - 840
Target Start/End: Complemental strand, 45197145 - 45196956
Alignment:
| Q |
651 |
taaaaagccctacattattaatatgtcacagccattcatgtttctaattttataaatgattatgataaaagtcaaatgttaatattgatccaacggttat |
750 |
Q |
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| T |
45197145 |
taaaaagccctacattattaatatgtcactgtcattcatgtttctattttttataatgattatgataaaagtcaaatgttaatattgatccaatggttat |
45197046 |
T |
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| Q |
751 |
gattaatcgccggtgtaaaaaatttacattgacaatatctttttgttgttgtcatgttataggtacaaagttttcatcaccatctaacga |
840 |
Q |
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| T |
45197045 |
gattaatcgccggtgtaaaaaatttacattgacaatatctttttgtttttgtcatgttataggtacaaagttttcatcaccatctaacga |
45196956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 564 - 657
Target Start/End: Complemental strand, 45197330 - 45197237
Alignment:
| Q |
564 |
gtgattcaaacaggcactaacagtaacaggcaataaaaattatttgataaattgataagagaatagggcttggctttgctgtctttttaaaaag |
657 |
Q |
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| T |
45197330 |
gtgattcaaacaggcactaacagtaacaggcaataaaaattatttgataaattgataagagaatagggcttggctttgctgtctttttaaaaag |
45197237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 424 - 474
Target Start/End: Complemental strand, 45197463 - 45197413
Alignment:
| Q |
424 |
aaaaacttataaggaacattgcgaaaaagttttgaaaaatcacatcaccaa |
474 |
Q |
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| T |
45197463 |
aaaaaattataaggaacattgcgaaaaagttttgaaaaattacatcaccaa |
45197413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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