View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11979_high_13 (Length: 243)

Name: NF11979_high_13
Description: NF11979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11979_high_13
NF11979_high_13
[»] chr5 (8 HSPs)
chr5 (1-232)||(20694792-20695022)
chr5 (77-137)||(20083710-20083770)
chr5 (164-224)||(23157698-23157758)
chr5 (161-232)||(11274221-11274292)
chr5 (161-205)||(7742761-7742805)
chr5 (85-136)||(17695281-17695332)
chr5 (161-205)||(19763777-19763821)
chr5 (161-205)||(30072295-30072339)
[»] chr2 (12 HSPs)
chr2 (16-143)||(17414913-17415040)
chr2 (71-137)||(18818946-18819011)
chr2 (72-137)||(17862654-17862719)
chr2 (162-202)||(31274138-31274178)
chr2 (161-232)||(17152306-17152377)
chr2 (161-200)||(18818886-18818925)
chr2 (162-205)||(31262176-31262219)
chr2 (161-231)||(14921930-14922000)
chr2 (164-232)||(17415058-17415125)
chr2 (72-137)||(17884446-17884513)
chr2 (75-143)||(19541274-19541342)
chr2 (164-192)||(22525714-22525742)
[»] chr8 (11 HSPs)
chr8 (77-143)||(5153996-5154062)
chr8 (161-205)||(28291992-28292036)
chr8 (72-137)||(27097607-27097672)
chr8 (76-125)||(29292026-29292075)
chr8 (161-232)||(13583411-13583482)
chr8 (161-232)||(16052168-16052239)
chr8 (163-205)||(14424706-14424748)
chr8 (164-202)||(29291952-29291990)
chr8 (162-223)||(28859131-28859192)
chr8 (161-205)||(6888084-6888128)
chr8 (71-135)||(14424617-14424681)
[»] chr7 (6 HSPs)
chr7 (162-233)||(21545719-21545790)
chr7 (162-205)||(12358655-12358698)
chr7 (161-231)||(5312677-5312747)
chr7 (77-137)||(8308847-8308906)
chr7 (161-205)||(29544699-29544743)
chr7 (161-229)||(30405749-30405817)
[»] chr3 (10 HSPs)
chr3 (76-143)||(11475090-11475157)
chr3 (161-232)||(19219102-19219173)
chr3 (161-231)||(10341940-10342010)
chr3 (161-203)||(11475028-11475070)
chr3 (64-143)||(8402348-8402427)
chr3 (161-232)||(16970614-16970685)
chr3 (161-205)||(18474349-18474393)
chr3 (161-205)||(19285277-19285321)
chr3 (58-102)||(19285335-19285379)
chr3 (161-205)||(19543015-19543059)
[»] chr6 (6 HSPs)
chr6 (71-205)||(26499652-26499782)
chr6 (68-125)||(12972186-12972243)
chr6 (71-117)||(16439722-16439768)
chr6 (161-229)||(33638396-33638464)
chr6 (162-205)||(30355496-30355539)
chr6 (161-205)||(33638265-33638309)
[»] chr4 (10 HSPs)
chr4 (71-137)||(22119864-22119929)
chr4 (76-202)||(31859710-31859833)
chr4 (77-125)||(18444486-18444534)
chr4 (161-232)||(5676352-5676423)
chr4 (161-208)||(5906654-5906701)
chr4 (169-232)||(26159908-26159971)
chr4 (161-203)||(33519211-33519253)
chr4 (163-232)||(13064578-13064647)
chr4 (161-205)||(17187352-17187396)
chr4 (71-143)||(21077471-21077542)
[»] scaffold0185 (1 HSPs)
scaffold0185 (76-113)||(2768-2805)
[»] scaffold0171 (1 HSPs)
scaffold0171 (161-205)||(21577-21621)
[»] chr1 (10 HSPs)
chr1 (161-205)||(11769885-11769929)
chr1 (49-125)||(19257588-19257664)
chr1 (161-205)||(25494380-25494424)
chr1 (163-223)||(25727802-25727862)
chr1 (163-223)||(25736210-25736270)
chr1 (161-205)||(26854211-26854255)
chr1 (161-205)||(52271136-52271180)
chr1 (161-232)||(18300894-18300965)
chr1 (53-123)||(14745194-14745263)
chr1 (161-205)||(21548827-21548871)
[»] scaffold0011 (2 HSPs)
scaffold0011 (161-192)||(228078-228109)
scaffold0011 (61-143)||(227981-228063)
[»] scaffold0190 (1 HSPs)
scaffold0190 (161-205)||(11589-11633)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 20695022 - 20694792
Alignment:
Q  1 atgcaaggcgcatagagtgaggcatatgggcgcatggcctaggcgctggtgcgcttttggcagcctttcctgtgcgaattttgcagttttcgtccctttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20695022 atgcaaggcgcatagagtgaggcatatgggcgcatggcctgggcgctggtgcgcttttggcagcctttcctgtgcgaattttgcagttttcgtccctttt 20694923  T
Q  101 tcgagcgttcttccgtcgtgcaatggcttagaacttgcaatgannnnnnnnnnnngcttggtattgtcttcaaataccttctaagaaccatttatcttca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  20694922 tcgagcgttcttccgtcgtgcaatggcttagaacttgcaatga-tttttttttttgcttggtattgtcttcaaataccttctaagaaccatttatcttca 20694824  T
Q  201 atcttaatgtccgttatccttcacatgatgtc 232  Q
    ||||||||||||||||||||||| ||||||||    
T  20694823 atcttaatgtccgttatccttcatatgatgtc 20694792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 20083770 - 20083710
Alignment:
Q  77 aattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttg 137  Q
    |||||||||||||||||||||||||||||  |||||||||| |||| || |||||||||||    
T  20083770 aattttgcagttttcgtccctttttcgagtattcttccgtcttgcagtgccttagaacttg 20083710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 23157698 - 23157758
Alignment:
Q  164 ttgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcac 224  Q
    ||||||| ||||||||| ||||||||||| | ||||||||||||| ||| |||||||||||    
T  23157698 ttgtctttaaataccttataagaaccattgaacttcaatcttaatatcctttatccttcac 23157758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 11274221 - 11274292
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgtc 232  Q
    |||||||||||||| |||||||||||||||||  ||||||||||| || ||| | ||||||||  |||||||    
T  11274221 gtattgtcttcaaagaccttctaagaaccattggtcttcaatcttcatatccttgatccttcatgtgatgtc 11274292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 7742761 - 7742805
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||    
T  7742761 gtattgtcttcaaagaccttctaagaaccattgatcttcagtctt 7742805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 17695281 - 17695332
Alignment:
Q  85 agttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaactt 136  Q
    ||||||||||||||||||||||||||||| ||| || |||| ||| ||||||    
T  17695281 agttttcgtccctttttcgagcgttcttcggtcttgaaatgccttggaactt 17695332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 19763777 - 19763821
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    ||||| |||||||| |||||||||||||| || ||||||||||||    
T  19763777 gtattatcttcaaaaaccttctaagaacccttgatcttcaatctt 19763821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 30072339 - 30072295
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    |||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  30072339 gtattgtctttaaaaaccttttaagaaccattaatcttcaatctt 30072295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 17414913 - 17415040
Alignment:
Q  16 agtgaggcatatgggcgcatggcctaggcgctggtgcgcttttggcagcctttcctgtgcgaattttgcagttttcgtccctttttcgagcgttcttccg 115  Q
    ||||||||| | | ||||||||| |  ||||||||||||||||| || ||  ||||||||||||| || |||||| |||||||||| |||||||||||||    
T  17414913 agtgaggcacaagagcgcatggcatgagcgctggtgcgcttttgacatcccctcctgtgcgaattatgtagtttttgtcccttttttgagcgttcttccg 17415012  T
Q  116 tcgtgcaatggcttagaacttgcaatga 143  Q
    || ||||||| ||||||||||| |||||    
T  17415013 tcttgcaatgtcttagaacttgaaatga 17415040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 18819011 - 18818946
Alignment:
Q  71 tgtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttg 137  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||| ||||||| ||| |||||||    
T  18819011 tgtgcgaattttgcagttttcatcccttttt-gagcattcttccgtcttgcaatgtcttggaacttg 18818946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 17862719 - 17862654
Alignment:
Q  72 gtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttg 137  Q
    |||| |||||||||||||| |||||||||||||||||| ||||| | || |||| ||| |||||||    
T  17862719 gtgcaaattttgcagtttttgtccctttttcgagcgtttttccgccatgaaatgtcttggaacttg 17862654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 31274178 - 31274138
Alignment:
Q  162 tattgtcttcaaataccttctaagaaccatttatcttcaat 202  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  31274178 tattgtcttcaaagaccttctaagaaccattaatcttcaat 31274138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 17152377 - 17152306
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgtc 232  Q
    ||||| |||||||| ||||||||||||||||| || |||| |||| || ||| | |||||||||| ||||||    
T  17152377 gtattatcttcaaaaaccttctaagaaccattcatattcattcttcatatccttgatccttcacacgatgtc 17152306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 18818925 - 18818886
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttca 200  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  18818925 gtattgtcttcaaagaccttctaagaaccattaatcttca 18818886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 31262219 - 31262176
Alignment:
Q  162 tattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    ||||||||||||| |||| |||||||||||| ||||||||||||    
T  31262219 tattgtcttcaaagacctactaagaaccattaatcttcaatctt 31262176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 14921930 - 14922000
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgt 231  Q
    ||||||||| || ||||||||||||||||||| | |||||||||| || |||   || |||||||||||||    
T  14921930 gtattgtctacatataccttctaagaaccattgaacttcaatcttcatatcctcgattcttcacatgatgt 14922000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 17415058 - 17415125
Alignment:
Q  164 ttgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgtc 232  Q
    ||||||||||||| || |||||||||||| || ||||||||| ||||||   ||||||||| |||||||    
T  17415058 ttgtcttcaaataactcctaagaaccattgat-ttcaatcttcatgtcctcgatccttcacgtgatgtc 17415125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 17884446 - 17884513
Alignment:
Q  72 gtgcgaattttgcagttttcgtccctttttcgagcg--ttcttccgtcgtgcaatggcttagaacttg 137  Q
    |||||||||||||| ||||||||| | |||||||||  |||||||||| |  |||| |||||||||||    
T  17884446 gtgcgaattttgcaattttcgtccatgtttcgagcgttttcttccgtcttaaaatgtcttagaacttg 17884513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 19541342 - 19541274
Alignment:
Q  75 cgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttgcaatga 143  Q
    ||||||||| |||||| ||||||||||||||| || ||| ||| ||||||| ||  ||||||| |||||    
T  19541342 cgaattttgtagtttttgtccctttttcgagcatttttctgtcttgcaatgcctatgaacttgaaatga 19541274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 22525714 - 22525742
Alignment:
Q  164 ttgtcttcaaataccttctaagaaccatt 192  Q
    |||||||||||||||||||||||||||||    
T  22525714 ttgtcttcaaataccttctaagaaccatt 22525742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 5154062 - 5153996
Alignment:
Q  77 aattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttgcaatga 143  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||| |||||    
T  5154062 aattttgcagttttcgtccctttttcgagcattcttccgtcttgcaatgtcttggaacttgaaatga 5153996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 28291992 - 28292036
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||    
T  28291992 gtattgtcttcaaagaccttctaagaaccattaatcttcaatctt 28292036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 27097607 - 27097672
Alignment:
Q  72 gtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttg 137  Q
    ||||||||||||| |||||| || |||||| ||| ||||||||||| ||||||| ||| |||||||    
T  27097607 gtgcgaattttgcggttttcatctcttttttgagtgttcttccgtcttgcaatgccttggaacttg 27097672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 29292075 - 29292026
Alignment:
Q  76 gaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatg 125  Q
    ||||||| || ||||||||||||||||| ||||||||||||| |||||||    
T  29292075 gaattttacaattttcgtccctttttcgtgcgttcttccgtcttgcaatg 29292026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 13583411 - 13583482
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgtc 232  Q
    |||||||||||||||| ||||||||||||||| | |||||||| | || |||   ||||||||| |||||||    
T  13583411 gtattgtcttcaaatatcttctaagaaccattgaacttcaatcatcatatcctcgatccttcacttgatgtc 13583482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 16052168 - 16052239
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgtc 232  Q
    |||||||||||||| |||||||||||| ||||  |||| |||||| || ||| ||||||||||  |||||||    
T  16052168 gtattgtcttcaaaaaccttctaagaatcattggtctttaatcttcatatcctttatccttcatgtgatgtc 16052239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 14424706 - 14424748
Alignment:
Q  163 attgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||    
T  14424706 attgtgttcaaaaaccttctaagaaccattgatcttcaatctt 14424748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 29291990 - 29291952
Alignment:
Q  164 ttgtcttcaaataccttctaagaaccatttatcttcaat 202  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  29291990 ttgtcttcaaagaccttctaagaaccattgatcttcaat 29291952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 28859131 - 28859192
Alignment:
Q  162 tattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttca 223  Q
    ||||||||||||| ||| ||||||||||||| ||||| |||||| || ||| | ||||||||    
T  28859131 tattgtcttcaaaaaccatctaagaaccattgatctttaatcttgatatccttgatccttca 28859192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 6888084 - 6888128
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    |||||||||||||| || || ||||||||||| ||||||||||||    
T  6888084 gtattgtcttcaaagacattttaagaaccattgatcttcaatctt 6888128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 14424617 - 14424681
Alignment:
Q  71 tgtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaact 135  Q
    ||||| |||||||||  ||| |||||||||| ||| ||||||||||| ||||||  |||||||||    
T  14424617 tgtgcaaattttgcatcttttgtcccttttttgagagttcttccgtcttgcaatatcttagaact 14424681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 21545719 - 21545790
Alignment:
Q  162 tattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgtcc 233  Q
    |||||||||||||||| |||||||||||||| |||||||||||| || ||| | ||||||||| ||||||||    
T  21545719 tattgtcttcaaatactttctaagaaccattgatcttcaatcttcatatccttgatccttcacgtgatgtcc 21545790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 12358655 - 12358698
Alignment:
Q  162 tattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  12358655 tattgtcttcaaaaaccttctaagaaccattgatcttcaatctt 12358698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 5312677 - 5312747
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgt 231  Q
    |||||||||||||| | |||||||||||||||||| ||||||| | || ||| | ||||||||| ||||||    
T  5312677 gtattgtcttcaaaaatcttctaagaaccatttatgttcaatcctcatatccttgatccttcacttgatgt 5312747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 8308847 - 8308906
Alignment:
Q  77 aattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttg 137  Q
    ||||||||||||||| ||||||||| ||||||||||||||| ||||||  ||| |||||||    
T  8308847 aattttgcagttttcctcccttttt-gagcgttcttccgtcttgcaataccttggaacttg 8308906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 29544743 - 29544699
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    |||||||||||||| |||||||||||| |||| ||||||||||||    
T  29544743 gtattgtcttcaaaaaccttctaagaatcattgatcttcaatctt 29544699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 30405817 - 30405749
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgat 229  Q
    ||||||| ||||||||||||||||||| |||| | |||||||||| || |||   ||||||||||||||    
T  30405817 gtattgtattcaaataccttctaagaatcattgaacttcaatcttcatatcctcgatccttcacatgat 30405749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 11475157 - 11475090
Alignment:
Q  76 gaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttgcaatga 143  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||||| | ||| ||||||| |||||    
T  11475157 gaattttgcagttttcgtccctttttttagcgttcttccgtcttgcaacgccttggaacttgaaatga 11475090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 19219102 - 19219173
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgtc 232  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| || ||| | ||||||||  |||||||    
T  19219102 gtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcatatccttgatccttcatgtgatgtc 19219173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 10342010 - 10341940
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgt 231  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||  | ||| | ||||||||| ||||||    
T  10342010 gtattgtcttcaaaaaccttctaagaaccactgatcttcaatctttctatccttaatccttcacttgatgt 10341940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 11475070 - 11475028
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatc 203  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  11475070 gtattgtcttcaaatatcttctaagaaccatttatcttgaatc 11475028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 8402348 - 8402427
Alignment:
Q  64 cctttcctgtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttgcaatga 143  Q
    ||||||||||| ||||||||||||||||||||| |||||   | ||||||| || ||||||| | | ||||||| |||||    
T  8402348 cctttcctgtgtgaattttgcagttttcgtcccattttctcacattcttccatcttgcaatgtcatggaacttgaaatga 8402427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 16970685 - 16970614
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgtc 232  Q
    ||||| |||||||| |||||||||||||| ||  ||||||| ||| || ||| | |||||||||||||||||    
T  16970685 gtattttcttcaaaaaccttctaagaaccgttggtcttcaaacttcatatccttgatccttcacatgatgtc 16970614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 18474393 - 18474349
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    ||||||||||||||||||||||||| |||||| |  |||||||||    
T  18474393 gtattgtcttcaaataccttctaagtaccattgaaattcaatctt 18474349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 19285321 - 19285277
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    ||||||||||||||||||||| |||||||||| ||  ||||||||    
T  19285321 gtattgtcttcaaataccttccaagaaccattgattatcaatctt 19285277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 19285379 - 19285335
Alignment:
Q  58 tggcagcctttcctgtgcgaattttgcagttttcgtccctttttc 102  Q
    |||||||| ||||||||| |||||||| || ||||||||||||||    
T  19285379 tggcagcccttcctgtgcaaattttgcggtattcgtccctttttc 19285335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 19543015 - 19543059
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    |||||||||||||||||||||||||||| ||| |  |||||||||    
T  19543015 gtattgtcttcaaataccttctaagaactattgaaattcaatctt 19543059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 205
Target Start/End: Original strand, 26499652 - 26499782
Alignment:
Q  71 tgtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttgcaatgannnnnnnnnnnngcttggtattgtctt 170  Q
    ||||| ||||||||||||||||| | ||||||||||||| ||||||| ||||||| |||  |||||| |||||             ||| ||||||||||    
T  26499652 tgtgcaaattttgcagttttcgttc-tttttcgagcgttgttccgtcttgcaatgccttgaaacttgaaatgaattttcttta---ctttgtattgtctt 26499747  T
Q  171 caaataccttctaagaaccatttatcttcaatctt 205  Q
    |||| ||||||||||||||||| ||||||||||||    
T  26499748 caaaaaccttctaagaaccattgatcttcaatctt 26499782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 12972186 - 12972243
Alignment:
Q  68 tcctgtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatg 125  Q
    |||||| |||||||||||||||||||  ||||||||||| |||||||||| |||||||    
T  12972186 tcctgtacgaattttgcagttttcgttactttttcgagcattcttccgtcttgcaatg 12972243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 16439768 - 16439722
Alignment:
Q  71 tgtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtc 117  Q
    |||||||| |||||||| ||| |||||||||||||||||||||||||    
T  16439768 tgtgcgaactttgcagtattcctccctttttcgagcgttcttccgtc 16439722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 33638396 - 33638464
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgat 229  Q
    ||||| |||||||| ||||| ||||||||||| |||||||||||| || ||| | ||||||||| ||||    
T  33638396 gtattatcttcaaagaccttataagaaccattgatcttcaatcttcatatccttgatccttcacttgat 33638464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 30355539 - 30355496
Alignment:
Q  162 tattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||||    
T  30355539 tattgtcttcaaaaaccttctaagaacgattgatcttcaatctt 30355496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 33638309 - 33638265
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    ||||| |||||||| ||||| ||||||||||| ||||||||||||    
T  33638309 gtattatcttcaaagaccttataagaaccattgatcttcaatctt 33638265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 22119929 - 22119864
Alignment:
Q  71 tgtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttg 137  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||    
T  22119929 tgtgccaatttt-cagttttcgttcctttttcgagcgttcttccgtcttgcaatgacttggaacttg 22119864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 202
Target Start/End: Original strand, 31859710 - 31859833
Alignment:
Q  76 gaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttgcaatgannnnnnnnnnnngcttggtattgtcttcaaat 175  Q
    |||||||||||||||||||| ||||||  ||||||||||||| || |||| ||| ||||||| ||| |             ||| |||||||||||||||    
T  31859710 gaattttgcagttttcgtccttttttcacgcgttcttccgtcttgaaatgccttggaacttgaaataaattttcttca---ctttgtattgtcttcaaat 31859806  T
Q  176 accttctaagaaccatttatcttcaat 202  Q
    ||||||||||||||||| |||||||||    
T  31859807 accttctaagaaccattgatcttcaat 31859833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 18444534 - 18444486
Alignment:
Q  77 aattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatg 125  Q
    ||||||||||||||| ||||||||||||| ||||||||||| |||||||    
T  18444534 aattttgcagttttcatccctttttcgagtgttcttccgtcttgcaatg 18444486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 5676423 - 5676352
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgtc 232  Q
    |||||||||||||| |||||||||||| ||||| | ||||| |||||| ||| | ||||||||  |||||||    
T  5676423 gtattgtcttcaaaaaccttctaagaatcatttgtattcaaacttaatatccttgatccttcatgtgatgtc 5676352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 5906654 - 5906701
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaat 208  Q
    ||||| |||||||| ||||||||||||||||| ||||| |||||||||    
T  5906654 gtattatcttcaaaaaccttctaagaaccattaatcttaaatcttaat 5906701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 26159971 - 26159908
Alignment:
Q  169 ttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgtc 232  Q
    |||||| ||||| ||||||||||| |||||||||||| || |||   |||||||||||||||||    
T  26159971 ttcaaagaccttataagaaccattgatcttcaatcttcatatcctgaatccttcacatgatgtc 26159908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 33519253 - 33519211
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatc 203  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||    
T  33519253 gtattgtcttcaaagaccttctaagaacgattgatcttcaatc 33519211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 13064647 - 13064578
Alignment:
Q  163 attgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgtc 232  Q
    |||||||||||||||| ||||||||||||| | |||||||| |  | ||| | ||||||||| |||||||    
T  13064647 attgtcttcaaataccctctaagaaccattgaacttcaatcgtcttatccttgatccttcacgtgatgtc 13064578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 17187396 - 17187352
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    |||||||||||||||| ||||||||||||| | | ||||||||||    
T  17187396 gtattgtcttcaaataacttctaagaaccactgaacttcaatctt 17187352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 21077542 - 21077471
Alignment:
Q  71 tgtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttgcaatga 143  Q
    ||||||||||||||||||||||| ||||||| |||  ||||||| || | ||||| ||| ||||||| |||||    
T  21077542 tgtgcgaattttgcagttttcgtaccttttt-gagtattcttccatctttcaatgccttggaacttgaaatga 21077471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 2805 - 2768
Alignment:
Q  76 gaattttgcagttttcgtccctttttcgagcgttcttc 113  Q
    |||||||||||||||||||||||||||||| |||||||    
T  2805 gaattttgcagttttcgtccctttttcgagtgttcttc 2768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 21621 - 21577
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  21621 gtattgtctttaaaaaccttctaagaaccattgatcttcaatctt 21577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 11769885 - 11769929
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    |||||||||||||| |||||||||||||||||  |||||||||||    
T  11769885 gtattgtcttcaaaaaccttctaagaaccattggtcttcaatctt 11769929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 19257588 - 19257664
Alignment:
Q  49 gtgcgcttttggcagcctttcctgtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatg 125  Q
    |||||||| ||||||||  || ||||| |||||||  |||||| |||||||||||||| || ||||||| |||||||    
T  19257588 gtgcgcttatggcagcccatcatgtgcaaattttgttgttttcttccctttttcgagcatttttccgtcttgcaatg 19257664  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 25494380 - 25494424
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    |||||||||||||| |||||||||||||||||  |||||||||||    
T  25494380 gtattgtcttcaaaaaccttctaagaaccattggtcttcaatctt 25494424  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 25727802 - 25727862
Alignment:
Q  163 attgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttca 223  Q
    |||||||||||| |||||| |||||||||| |||||||||||| || ||| | ||||||||    
T  25727802 attgtcttcaaaaaccttccaagaaccattgatcttcaatcttcatatccttaatccttca 25727862  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 25736210 - 25736270
Alignment:
Q  163 attgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttca 223  Q
    |||||||||||| |||||| |||||||||| |||||||||||| || ||| | ||||||||    
T  25736210 attgtcttcaaaaaccttccaagaaccattgatcttcaatcttcatatccttaatccttca 25736270  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 26854211 - 26854255
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||    
T  26854211 gtattgtcttcaaatatcttctaagaaccattgaacttcaatctt 26854255  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 52271136 - 52271180
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    ||||||||||||||||||||||||| |||||| | ||||||||||    
T  52271136 gtattgtcttcaaataccttctaagtaccattgaacttcaatctt 52271180  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 18300894 - 18300965
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatcttaatgtccgttatccttcacatgatgtc 232  Q
    |||||||||||||| |||||||||||||||||  | || |||||| || ||| | ||||||||| |||||||    
T  18300894 gtattgtcttcaaaaaccttctaagaaccattggtatttaatcttcatatccttgatccttcacgtgatgtc 18300965  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 14745194 - 14745263
Alignment:
Q  53 gcttttggcagcctttcctgtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaa 123  Q
    |||||||||||||  |||  ||||||||||||||||| ||||||  |||||||||||||||| || |||||    
T  14745194 gcttttggcagccagtcccttgcgaattttgcagtttacgtccc-ctttcgagcgttcttccatcttgcaa 14745263  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 21548871 - 21548827
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    ||||| |||||||||  ||||||||||||||||| ||||||||||    
T  21548871 gtattatcttcaaatgtcttctaagaaccatttagcttcaatctt 21548827  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 192
Target Start/End: Original strand, 228078 - 228109
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatt 192  Q
    ||||||||||||||||||||||||||||||||    
T  228078 gtattgtcttcaaataccttctaagaaccatt 228109  T

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Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 227981 - 228063
Alignment:
Q  61 cagcctttcctgtgcgaattttgcagttttcgtccctttttcgagcgttcttccgtcgtgcaatggcttagaacttgcaatga 143  Q
    |||||| ||||| |||||||  ||| |||||| |||||||||   |||||||||||| ||||||| ||| ||||||| |||||    
T  227981 cagcctctcctgcgcgaattcagcaattttcgaccctttttcacccgttcttccgtcttgcaatgtcttggaacttgaaatga 228063  T

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Target: scaffold0190 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 11589 - 11633
Alignment:
Q  161 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 205  Q
    |||||||||||||||||||| |||||| |||| || |||||||||    
T  11589 gtattgtcttcaaataccttataagaatcattgatattcaatctt 11633  T

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