View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11979_high_3 (Length: 849)
Name: NF11979_high_3
Description: NF11979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11979_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 331 - 830
Target Start/End: Complemental strand, 4520345 - 4519846
Alignment:
| Q |
331 |
aaacaaatttataggaagtgtttactttgtttgtgataaattcatttatgttttagaatcattcaacgatccttaaaacaattataatggaaaattcaag |
430 |
Q |
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| T |
4520345 |
aaacaaatttataggaagtgtttactttgtttgtgataaattcatttatgttttagaatcattcaacgatccttaaaacaattataatggaaagttcaag |
4520246 |
T |
|
| Q |
431 |
aatagttgtggtgtctgctactgtttgagacagacactgaatattaaactacttagaatgtatccatatgtctgtgtgagataagtataacatcggttaa |
530 |
Q |
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| T |
4520245 |
aacagttgtggtgtctgctactgtttgagacagacactgaatattaaactacttagaatgtatccatatgtctgtgtgagataagtataacatcggttaa |
4520146 |
T |
|
| Q |
531 |
ttttcatgatttctgtcacaaatttagcactcaaaagtagcaaaaaggtaacattgcttatgctattttcttgctgttaccttctctattttcaattttt |
630 |
Q |
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| T |
4520145 |
ttttcatgatttctgtcacaagtttagcactcaaaagtagcaaaaatgaaacattgcttatgctattttcttgctgttaccttctctattttcaattttt |
4520046 |
T |
|
| Q |
631 |
ctacactgtttggactgattcttgcatgaaatgacgctggaacatgttggtaaactttttagtattgttaatgttacacttcatttcaatccttgaagtt |
730 |
Q |
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| T |
4520045 |
ctacactgtttggactgattcttgcatgaaatgacgctggaacatgttggtaaactttttagtattgttaatgttagacttcatttcaatccttgaagtt |
4519946 |
T |
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| Q |
731 |
tctgctgtttaaaattctcttttaagtgttatttttggttttagaattttgaggactttgtagtggaacatttcctaaccagagctcgtgatattctgag |
830 |
Q |
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| T |
4519945 |
tctgctgtttaaaattctcttttaagtgttatttttggttttagaattttgaggactttgcagtggaacatttcctaaccagagctcgtgatattctgag |
4519846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 15 - 332
Target Start/End: Complemental strand, 4520694 - 4520377
Alignment:
| Q |
15 |
caaagggagaaggagacttttaatttcttcaattttcttcgtgccttccttgctagtcattgttcccttttattgaaggttaagagaatattcccatctg |
114 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520694 |
caaaggaagaaggagacttttaatttcttcagttttcttcgtgccttccttgctagtcattgttcccttttattgaaggttaagagaatattcccatctg |
4520595 |
T |
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| Q |
115 |
caagacgtagaaggcatcnnnnnnnatgcagaaatccccatctgtccaacaactcatatcgaatggggaggtggtgttcatactaaactgtatttgtgca |
214 |
Q |
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| T |
4520594 |
caagacgtagaaggcatccggggggatgcagaaatccccatctgtccaacaactcatatcgaatggggaggtggtgttcatactaaactgtatttgtgca |
4520495 |
T |
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| Q |
215 |
caactttctctgttttactgtcgttactttctctgttttcaatttttctacacctgtgtagactgagtttatgcataatggtgtaagtatctttttatct |
314 |
Q |
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| T |
4520494 |
caactttctctgttttactgtcgttactttctctgttttcaatttttctacacctgtgtagactgagtttatgcataatggtgtaagtatctttttattt |
4520395 |
T |
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| Q |
315 |
gtgttgatgtcttgaaaa |
332 |
Q |
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|||||||||||||||||| |
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| T |
4520394 |
gtgttgatgtcttgaaaa |
4520377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 331 - 469
Target Start/End: Complemental strand, 8152567 - 8152424
Alignment:
| Q |
331 |
aaacaaatttataggaagtgtt-----tactttgtttgtgataaattcatttatgttttagaatcattcaacgatccttaaaacaattataatggaaaat |
425 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||||| |||| |||||||||| ||||||| ||||||| || ||||| |||||||||||| | |
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| T |
8152567 |
aaacaaatttatacgaagtgttctttatactttgtttgtgataagttcacttatgttttaaaatcattgaacgatcattgaaacagttataatggaaagt |
8152468 |
T |
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| Q |
426 |
tcaagaatagttgtggtgtctgctactgtttgagacagacactg |
469 |
Q |
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| T |
8152467 |
tcaagaacagttgtggtgtctgctactgtttgagacagacactg |
8152424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 8152635 - 8152599
Alignment:
| Q |
296 |
tgtaagtatctttttatctgtgttgatgtcttgaaaa |
332 |
Q |
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| T |
8152635 |
tgtaagtatctttttatttgtgttgatgtcttgaaaa |
8152599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 751 - 827
Target Start/End: Complemental strand, 5838392 - 5838316
Alignment:
| Q |
751 |
tttaagtgttatttttggttttagaattttgaggactttgtagtggaacatttcctaaccagagctcgtgatattct |
827 |
Q |
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||||||||||||||||||||| ||||||||||||| ||| |||||| |||||||| | |||||| ||||||||| |
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| T |
5838392 |
tttaagtgttatttttggtttcagaattttgaggattttatagtggggcatttcctcgtccgagctcatgatattct |
5838316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 750 - 804
Target Start/End: Complemental strand, 38792212 - 38792158
Alignment:
| Q |
750 |
ttttaagtgttatttttggttttagaattttgaggactttgtagtggaacatttc |
804 |
Q |
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||||||| |||||||||||||| ||||||| ||||||||||| ||||| |||||| |
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| T |
38792212 |
ttttaagagttatttttggtttcagaatttcgaggactttgttgtggagcatttc |
38792158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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