View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11979_high_6 (Length: 337)
Name: NF11979_high_6
Description: NF11979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11979_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 32797739 - 32797949
Alignment:
| Q |
14 |
aggcagagtatagaaccctcaccctcacttccgcaacctgtgaacttcaatagatcgtctatcttctaaatgatttgaaaatcatttgcaaaataacata |
113 |
Q |
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| T |
32797739 |
aggcagagtatagaaccctcaccctcacttccgcaacctgtgaacttcaatagatcgtctatcttctaaatgatttgaaaatcatttgcaaaataacata |
32797838 |
T |
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| Q |
114 |
agttctgtattgtgataaactaagcactctccacattgctatagatccggtttttcacaaacgtataaagcatcaatacatcgattgtcacattacgttt |
213 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32797839 |
agttctgtattgtgataacctaagcactctccacattgctatagatccggtttttcacaaacgtataaagcatcaatacatcgattgtcacattacgttt |
32797938 |
T |
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| Q |
214 |
gagagaaaact |
224 |
Q |
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||||||||||| |
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| T |
32797939 |
gagagaaaact |
32797949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 32800675 - 32800779
Alignment:
| Q |
219 |
aaaactcaaggaggaattatgaagctgctaactattccagttagtcagtattctgtttattatatttccttcatcataggagttatctatcctacctagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32800675 |
aaaactcaaggaggaattatgaagctgctaactattccagttagtctgtattctgtttattctatttccttcatcataggagttatctatcctacctagt |
32800774 |
T |
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| Q |
319 |
tagtg |
323 |
Q |
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||||| |
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| T |
32800775 |
tagtg |
32800779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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