View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11979_low_12 (Length: 286)
Name: NF11979_low_12
Description: NF11979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11979_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 8715955 - 8716221
Alignment:
| Q |
14 |
agcacagaccgggtagaaataataccaaaagtgcatgtaggaggataggattgaggacctaaaactatatgctagagatgtgtgcggatctaaattagct |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8715955 |
agcactgaccgggtagaaataataccaaaagtgcatgtgggaggataggattgaggacctaaatatatatgctagagatgtgtgtggatctaaattagct |
8716054 |
T |
|
| Q |
114 |
tattcaaaagtttgatagctgattttgcttcatttaaaggnnnnnnn--tgaaaataaccaacctgggccttttcgaaaattgctcatgtgtactaatta |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8716055 |
tattcaaaattttgatagctgattttgcttcatttaaaggaaaaaaaaatgaaaataaccaacctgggccttttcgaaaattgctcatgtgtactaatta |
8716154 |
T |
|
| Q |
212 |
ataaaccacaaaattatgaagatccatagatatgaagttggatatacaaaccttatgccttcttctc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8716155 |
ataaaccacaaaattatgaagatccatagatatgaagttggatatacaaaccttatgccttcttctc |
8716221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 23444310 - 23444136
Alignment:
| Q |
14 |
agcacagaccgggtagaaataatacc-aaaagtgcatgtaggaggataggattgaggacctaaaactatatgctagagatgtgtgcggatctaaattagc |
112 |
Q |
| |
|
||||| ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
23444310 |
agcactgaccgggcataaataatacccaaaagtgcatgtaggaggataggattgaggacctaaaactatatgctagagatgtttacggatgtaaattagg |
23444211 |
T |
|
| Q |
113 |
ttattcaaaagtttgatagctgattttgcttcatttaaag-gnnnnnnntgaaaataaccaacctgggccttttc |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
23444210 |
ttattcaaaagtttgatagctgattttgctctatttaaagaaaaaaaaatgaaaataaccaacctgggccttttc |
23444136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 13768225 - 13768277
Alignment:
| Q |
214 |
aaaccacaaaattatgaagatccatagatatgaagttggata-tacaaacctt |
265 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||| | |||||||||| |
|
|
| T |
13768225 |
aaaccacaaaattataaagattcatagatatgaagttggacagtacaaacctt |
13768277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 13740854 - 13740883
Alignment:
| Q |
224 |
attatgaagatccatagatatgaagttgga |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
13740854 |
attatgaagatccatagatatgaagttgga |
13740883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 13754823 - 13754875
Alignment:
| Q |
214 |
aaaccacaaaattatgaagatccatagatatgaagttggata-tacaaacctt |
265 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
13754823 |
aaaccacaaaattataaagattaatagatatgaagttggacagtacaaacctt |
13754875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University