View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11979_low_15 (Length: 252)
Name: NF11979_low_15
Description: NF11979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11979_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 8715955 - 8716179
Alignment:
| Q |
14 |
agcacagaccgggtagaaataataccaaaagtgcatgtaggaggataggattgaggacctaaaactatatgctagagatgtgtgcggatctaaattagct |
113 |
Q |
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| T |
8715955 |
agcactgaccgggtagaaataataccaaaagtgcatgtgggaggataggattgaggacctaaatatatatgctagagatgtgtgtggatctaaattagct |
8716054 |
T |
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| Q |
114 |
tattcaaaagtttgatagctgattttgcttcatttaaagg--nnnnnnntgaaaataaccaacctgggccttttcgaaaattgctcatgtgtactaatta |
211 |
Q |
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| T |
8716055 |
tattcaaaattttgatagctgattttgcttcatttaaaggaaaaaaaaatgaaaataaccaacctgggccttttcgaaaattgctcatgtgtactaatta |
8716154 |
T |
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| Q |
212 |
ataaaccacaaaattatgaagatcc |
236 |
Q |
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| T |
8716155 |
ataaaccacaaaattatgaagatcc |
8716179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 23444310 - 23444136
Alignment:
| Q |
14 |
agcacagaccgggtagaaataatacc-aaaagtgcatgtaggaggataggattgaggacctaaaactatatgctagagatgtgtgcggatctaaattagc |
112 |
Q |
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||||| ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |
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| T |
23444310 |
agcactgaccgggcataaataatacccaaaagtgcatgtaggaggataggattgaggacctaaaactatatgctagagatgtttacggatgtaaattagg |
23444211 |
T |
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| Q |
113 |
ttattcaaaagtttgatagctgattttgcttcatttaaag-gnnnnnnntgaaaataaccaacctgggccttttc |
186 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
23444210 |
ttattcaaaagtttgatagctgattttgctctatttaaagaaaaaaaaatgaaaataaccaacctgggccttttc |
23444136 |
T |
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