View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11979_low_2 (Length: 859)

Name: NF11979_low_2
Description: NF11979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11979_low_2
NF11979_low_2
[»] chr7 (6 HSPs)
chr7 (17-387)||(35571200-35571580)
chr7 (496-804)||(34575597-34575899)
chr7 (496-618)||(13946646-13946768)
chr7 (449-498)||(35571078-35571127)
chr7 (497-615)||(20389914-20390032)
chr7 (497-572)||(5790553-5790628)
[»] chr2 (1 HSPs)
chr2 (496-778)||(17830841-17831116)
[»] chr1 (6 HSPs)
chr1 (496-621)||(29395395-29395520)
chr1 (495-621)||(30410799-30410925)
chr1 (497-621)||(35161954-35162078)
chr1 (496-536)||(25867301-25867341)
chr1 (497-614)||(4328782-4328900)
chr1 (497-572)||(16961660-16961735)
[»] chr3 (5 HSPs)
chr3 (497-621)||(55041458-55041582)
chr3 (497-621)||(4865120-4865244)
chr3 (497-615)||(46595734-46595852)
chr3 (497-534)||(30766071-30766108)
chr3 (500-533)||(37267567-37267600)
[»] chr8 (4 HSPs)
chr8 (494-621)||(1662530-1662657)
chr8 (497-621)||(11142703-11142827)
chr8 (714-780)||(41015310-41015376)
chr8 (501-617)||(1605265-1605381)
[»] chr6 (6 HSPs)
chr6 (500-621)||(11178361-11178482)
chr6 (495-615)||(4091335-4091455)
chr6 (500-620)||(32444477-32444597)
chr6 (500-621)||(2314420-2314541)
chr6 (497-572)||(4434987-4435062)
chr6 (497-615)||(28057046-28057164)
[»] chr5 (2 HSPs)
chr5 (500-621)||(9263597-9263718)
chr5 (497-570)||(37720018-37720091)
[»] chr4 (1 HSPs)
chr4 (497-554)||(7131302-7131359)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 35571580 - 35571200
Alignment:
Q  17 catgtttcgcatgttcttatgtttacaaaaaagagaatgtatgtcatgcttcattctatcttgcagcaattatcattcgaagtcaactttggtacttaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35571580 catgtttcgcatgttcttatgtttacaaaaaagagaatgtatgtcatgcttcattctatcttgcagcaattatcattcaaagtcaactttggtacttaaa 35571481  T
Q  117 atgcattccttcaacgacgagagatttacatgtacgtcttttgttctcaagatttataagatgttgattttcaaatgctatataatgtacgtgcaggtaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35571480 atgcattccttcaacgacgagagatttacatgtacgtcttttgttctcaagatttataagatgttgattttcaaatgctatataatgtacgtgcaggtaa 35571381  T
Q  217 cttgtgcgttttgtgtg-------------cactaggatcatttgtgaaaaatgtgggatagaaagaaatgttacataatacaaaggagagcactaaact 303  Q
    |||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  35571380 cttgtgcgttttgtgtggactaaaatacttgactaggatcatttgtgaaaaatgtgggatagaaagaaatgttac---atacaaaggagagcactaaact 35571284  T
Q  304 ttgctaaaaattactatcgattttgtctgatcctccgactgaacttcgtttgttgttgacagcagcggattatatagatgttgc 387  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||    
T  35571283 ttgctaaaaatcactatcgattgtgtctgatcctccgactgaacttcgtttgttgttgacagcaacggactgtatggatgttgc 35571200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 496 - 804
Target Start/End: Original strand, 34575597 - 34575899
Alignment:
Q  496 aatccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatg 595  Q
    |||| ||||||||||||||||| |||||||||| |||| | | |||||||||||||| | || |||||||||||||| | || || || | ||||||||     
T  34575597 aatcattattatctaatcctaacctacaatgcacacaacatttgcaaaaccctaatccttgcatttgagcgggaaaa-tgtgattaaaccacatttaatt 34575695  T
Q  596 ccatttttgaatttcaaatcatgtacacttattgacatggcgcgctaaactatccctcacgcccattaaatgcgatctttatattttccagacgatttgc 695  Q
     ||||||||||||||||||| ||||| |||| |||||| ||||| |||||||||||||||| |||||||||||  ||||||  |||||||||| ||||||    
T  34575696 gcatttttgaatttcaaatcctgtacccttaatgacatagcgcggtaaactatccctcacggccattaaatgcactctttagtttttccagactatttgc 34575795  T
Q  696 atccaatctgtatatgaatatgaatatgaagaatctctgcattggaaatca--atgtttccaacttttcaatgtaacagttaccaatttccatgcaccat 793  Q
    ||  |||||||      | |||| |||||||| ||||| | |||| |||||  |||||||||||||| |||||||||||||||| |||||||||||||||    
T  34575796 atggaatctgt------acatgactatgaagagtctctacgttggtaatcaatatgtttccaactttccaatgtaacagttacc-atttccatgcaccat 34575888  T
Q  794 atgattgtata 804  Q
    |||||||||||    
T  34575889 atgattgtata 34575899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 496 - 618
Target Start/End: Original strand, 13946646 - 13946768
Alignment:
Q  496 aatccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatg 595  Q
    ||||||||||||||||||||||||||||||||| |||| | | |||||||||||||| | |  |||||||||||||| | || ||||| | |||||||||    
T  13946646 aatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtgatttaaccacatttaatg 13946745  T
Q  596 ccatttttgaatttcaaatcatg 618  Q
      |||||||||||||||||||||    
T  13946746 ggatttttgaatttcaaatcatg 13946768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 35571127 - 35571078
Alignment:
Q  449 ggagagcactcaagtactatttataagcaagtgattttagaatgaataat 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35571127 ggagagcactcaagtactatttataagcaagtgattttagaatgaataat 35571078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 497 - 615
Target Start/End: Original strand, 20389914 - 20390032
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatgc 596  Q
    |||||||||||||||||||||||||||||||| |||||||    |||||||||||| ||   |||||||||||||| | || |   | |||| |||||||    
T  20389914 atccttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgc 20390013  T
Q  597 catttttgaatttcaaatc 615  Q
    ||||||  |||||||||||    
T  20390014 cattttcaaatttcaaatc 20390032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 572
Target Start/End: Complemental strand, 5790628 - 5790553
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaa 572  Q
    ||||||||||||||||| | |||||||||| | ||||||||   |||||||||||| |||  ||| ||||||||||    
T  5790628 atccttattatctaatcatgaactacaatgtaaacaaaacttctaaaaccctaatcctagattttaagcgggaaaa 5790553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 496 - 778
Target Start/End: Original strand, 17830841 - 17831116
Alignment:
Q  496 aatccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatg 595  Q
    |||||||||||||||||| ||| |||||||||| |||| | | |||||||||||||| | || |||||||||||||| | || ||||| |  |||||||     
T  17830841 aatccttattatctaatcataacctacaatgcacacaacatttgcaaaaccctaatccttgcatttgagcgggaaaa-tgtgatttaaccatatttaatt 17830939  T
Q  596 ccatttttgaatttcaaatcatgtacacttattgacatggcgcgctaaactatccctcacgcccattaaatgcgatctttatattttccagacgatttgc 695  Q
     ||||||||||||||||||| | ||| |||| |||||| ||||| |||||||||||||||| |||||||||||  ||||||  ||||||| || ||||||    
T  17830940 gcatttttgaatttcaaatcctatacccttaatgacatagcgcggtaaactatccctcacggccattaaatgcactctttagtttttccaaactatttgc 17831039  T
Q  696 atccaatctgtatatgaatatgaatatgaagaatctctgcattggaaatcaatgtttccaacttttcaatgtaacagttacca 778  Q
    ||  |||||||      | |||| |||||||| ||||| |||||  ||||||||||||| ||||| ||||| |||||||||||    
T  17831040 atgaaatctgt------acatgactatgaagagtctctacattgctaatcaatgtttcctactttccaatgaaacagttacca 17831116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 2e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 496 - 621
Target Start/End: Complemental strand, 29395520 - 29395395
Alignment:
Q  496 aatccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatg 595  Q
    ||||||||||||||||||||||||||||||||| |||| | | |||||||||||||| | | ||||||||||||||| | || ||||| | |||||||||    
T  29395520 aatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcattggctttgagcgggaaaattgtgatttaaccacatttaatg 29395421  T
Q  596 ccatttttgaatttcaaatcatgtac 621  Q
     |||||||||||||||||||||||||    
T  29395420 acatttttgaatttcaaatcatgtac 29395395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 495 - 621
Target Start/End: Complemental strand, 30410925 - 30410799
Alignment:
Q  495 taatccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaat 594  Q
    |||||||||||||||||| ||||||||||||||| |||| | | |||||||||||||| | | ||||||||||||||| | || ||||| | ||||||||    
T  30410925 taatccttattatctaattctaaactacaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtgatttaaccacatttaat 30410826  T
Q  595 gccatttttgaatttcaaatcatgtac 621  Q
    | |||||||||||||||||||||||||    
T  30410825 ggcatttttgaatttcaaatcatgtac 30410799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 497 - 621
Target Start/End: Original strand, 35161954 - 35162078
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatgc 596  Q
    |||||||||||||||||||||||||||||||| |||| | | |||||||||||||| | |  |||||||||||||| |||| ||||| |  ||||||||     
T  35161954 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggatttgagcgggaaaattatgatttaaccaaatttaatgg 35162053  T
Q  597 catttttgaatttcaaatcatgtac 621  Q
    |||||||||||||||||||||||||    
T  35162054 catttttgaatttcaaatcatgtac 35162078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 536
Target Start/End: Original strand, 25867301 - 25867341
Alignment:
Q  496 aatccttattatctaatcctaaactacaatgcatacaaaac 536  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  25867301 aatccttattatctaatcctaaactacaatgcaaacaaaac 25867341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 614
Target Start/End: Complemental strand, 4328900 - 4328782
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatg-ttttaagctcatttaatg 595  Q
    |||||||||||||||||||||| ||||||||| ||||   |  ||||||||||||| | |  |||||||||||||| | ||   |||| | |||||||||    
T  4328900 atccttattatctaatcctaaagtacaatgcacacaactttttcaaaaccctaatccttggttttgagcgggaaaattgtgcacttaaccacatttaatg 4328801  T
Q  596 ccatttttgaatttcaaat 614  Q
    | | |||||||||||||||    
T  4328800 ctaattttgaatttcaaat 4328782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 572
Target Start/End: Complemental strand, 16961735 - 16961660
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaa 572  Q
    |||||||| ||||||||||||||||||||| | |||||||    |||||||||||| ||   ||||||||||||||    
T  16961735 atccttatcatctaatcctaaactacaatgtaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaa 16961660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 7e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 497 - 621
Target Start/End: Complemental strand, 55041582 - 55041458
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatgc 596  Q
    |||||||||||||||||||||||||||||||| |||| | | |||||||||||||| | | ||||||||||||||| | || ||||| | |||||||||     
T  55041582 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtgatttaaccacatttaatgg 55041483  T
Q  597 catttttgaatttcaaatcatgtac 621  Q
    |||||||||||||||||||||||||    
T  55041482 catttttgaatttcaaatcatgtac 55041458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 497 - 621
Target Start/End: Original strand, 4865120 - 4865244
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatgc 596  Q
    |||||||||||||||||||||||||||||||| |||| | | |||||||||||||| | |  |||||||||||||| | || ||||| | |||||||||     
T  4865120 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtgatttaaccacatttaatgg 4865219  T
Q  597 catttttgaatttcaaatcatgtac 621  Q
    |||||||||||||||||||||||||    
T  4865220 catttttgaatttcaaatcatgtac 4865244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 615
Target Start/End: Complemental strand, 46595852 - 46595734
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatgc 596  Q
    |||||||||||||||||||||||||||||||| |||||||    |||||||||||| ||   ||||||| |||||| | || |   | |||| |||||||    
T  46595852 atccttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcaggaaaattttgctaatacctcacttaatgc 46595753  T
Q  597 catttttgaatttcaaatc 615  Q
    ||||||  |||||||||||    
T  46595752 cattttcaaatttcaaatc 46595734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 534
Target Start/End: Complemental strand, 30766108 - 30766071
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaa 534  Q
    |||||||||||||||||||||||||||||||| |||||    
T  30766108 atccttattatctaatcctaaactacaatgcacacaaa 30766071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 533
Target Start/End: Complemental strand, 37267600 - 37267567
Alignment:
Q  500 cttattatctaatcctaaactacaatgcatacaa 533  Q
    ||||||||||||||||||||||||||||| ||||    
T  37267600 cttattatctaatcctaaactacaatgcaaacaa 37267567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 494 - 621
Target Start/End: Complemental strand, 1662657 - 1662530
Alignment:
Q  494 ataatccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaat-cttagcctttgagcgggaaaaatatgttttaagctcattta 592  Q
    ||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||| |||||  |||||||||||||| | || ||||| |  |||||    
T  1662657 ataatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttag-atttgagcgggaaaattgtgatttaaccatattta 1662559  T
Q  593 atgccatttttgaatttcaaatcatgtac 621  Q
    ||| |||||||||||||||||||||||||    
T  1662558 atgtcatttttgaatttcaaatcatgtac 1662530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 497 - 621
Target Start/End: Original strand, 11142703 - 11142827
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatgc 596  Q
    |||||||||||||||||||||||||||||||| | || | | |||||||||||||| | | ||||||||||||||| | |  ||||| | |||||||||     
T  11142703 atccttattatctaatcctaaactacaatgcacataacaattgcaaaaccctaatcattggctttgagcgggaaaattgttatttaaccacatttaatgg 11142802  T
Q  597 catttttgaatttcaaatcatgtac 621  Q
    |||||||||||||||||||||||||    
T  11142803 catttttgaatttcaaatcatgtac 11142827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 714 - 780
Target Start/End: Original strand, 41015310 - 41015376
Alignment:
Q  714 tatgaatatgaagaatctctgcattggaaatcaatgtttccaacttttcaatgtaacagttaccaat 780  Q
    |||||||||||||| |||||| ||||| |||||||||||| || |||||||||||||||||||||||    
T  41015310 tatgaatatgaagagtctctgaattggtaatcaatgtttctaatttttcaatgtaacagttaccaat 41015376  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 501 - 617
Target Start/End: Complemental strand, 1605381 - 1605265
Alignment:
Q  501 ttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatgccatt 600  Q
    |||||||||||||||||||||| ||||||||||   | | |||||||||||| | |  || ||||||||||| ||||  |||| | || |||||| ||||    
T  1605381 ttattatctaatcctaaactacgatgcatacaactattgtaaaaccctaatccttgatttagagcgggaaaattatgcattaaccacacttaatgacatt 1605282  T
Q  601 tttgaatttcaaatcat 617  Q
    |||||||||||||||||    
T  1605281 tttgaatttcaaatcat 1605265  T

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Target: chr6 (Bit Score: 58; Significance: 6e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 500 - 621
Target Start/End: Original strand, 11178361 - 11178482
Alignment:
Q  500 cttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatgccat 599  Q
    ||||||||||||||||||||||||||||| |||||||    |||||||||||| ||   |||||| ||||||   ||| ||||| |||| ||||||||||    
T  11178361 cttattatctaatcctaaactacaatgcaaacaaaacatcaaaaaccctaatcctatgttttgagtgggaaactaatgctttaacctcacttaatgccat 11178460  T
Q  600 ttttgaatttcaaatcatgtac 621  Q
    ||||||||||||||||||||||    
T  11178461 ttttgaatttcaaatcatgtac 11178482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 495 - 615
Target Start/End: Original strand, 4091335 - 4091455
Alignment:
Q  495 taatccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaat 594  Q
    |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||| ||   |||||||||||||| | ||||   | |||| |||||    
T  4091335 taatccttattatctaatcctaaactacaatgcaaacaaaacatgcaaaaccctaatcctatgttttgagcgggaaaattttgttaatacctcacttaat 4091434  T
Q  595 gccatttttgaatttcaaatc 615  Q
    ||||||||  |||||||||||    
T  4091435 gccattttcaaatttcaaatc 4091455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 500 - 620
Target Start/End: Original strand, 32444477 - 32444597
Alignment:
Q  500 cttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatgccat 599  Q
    ||||||||||||||||||||||||||||| |||||||    |||||||||||| ||   |||||||||||||   ||| ||||| |||| ||||||||||    
T  32444477 cttattatctaatcctaaactacaatgcaaacaaaacattaaaaaccctaatcctaagttttgagcgggaaactaatgctttaacctcacttaatgccat 32444576  T
Q  600 ttttgaatttcaaatcatgta 620  Q
    |||||||||||||||| ||||    
T  32444577 ttttgaatttcaaatcctgta 32444597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 500 - 621
Target Start/End: Complemental strand, 2314541 - 2314420
Alignment:
Q  500 cttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatgccat 599  Q
    ||||||||||||||||||||||||||||| |||||||    |||| ||||||| ||   |||||||||||||   ||| ||||| || | ||||||||||    
T  2314541 cttattatctaatcctaaactacaatgcaaacaaaacatcaaaaatcctaatcctatgttttgagcgggaaactaatgctttaacctaacttaatgccat 2314442  T
Q  600 ttttgaatttcaaatcatgtac 621  Q
    |||| |||||||||||||||||    
T  2314441 tttttaatttcaaatcatgtac 2314420  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 497 - 572
Target Start/End: Original strand, 4434987 - 4435062
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaa 572  Q
    |||||||||||||||||||||||||||||||| |||||||    |||||||||||| ||   ||||||||||||||    
T  4434987 atccttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaa 4435062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 615
Target Start/End: Original strand, 28057046 - 28057164
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatgc 596  Q
    ||||||||||||||||||||||||||| |||| |||||||    |||||||||||| ||   |||||||||||||| | || |   | |||| |||||||    
T  28057046 atccttattatctaatcctaaactacagtgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgc 28057145  T
Q  597 catttttgaatttcaaatc 615  Q
    ||||||  |||||||||||    
T  28057146 cattttcaaatttcaaatc 28057164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 500 - 621
Target Start/End: Complemental strand, 9263718 - 9263597
Alignment:
Q  500 cttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaaaaatatgttttaagctcatttaatgccat 599  Q
    |||| |||||||||||||||||||||||| |||||||    |||| ||||||| ||   |||||||||||||   ||| ||||| || | ||||||||||    
T  9263718 cttaatatctaatcctaaactacaatgcaaacaaaacatcaaaaatcctaatcctatgttttgagcgggaaactaatgctttaacctaacttaatgccat 9263619  T
Q  600 ttttgaatttcaaatcatgtac 621  Q
    ||||||||||||||||||||||    
T  9263618 ttttgaatttcaaatcatgtac 9263597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 497 - 570
Target Start/End: Complemental strand, 37720091 - 37720018
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatcttagcctttgagcgggaa 570  Q
    |||||||||||||||||||||||||||||||| |||||||    |||||||||||| ||   ||||||||||||    
T  37720091 atccttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatattttgagcgggaa 37720018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 554
Target Start/End: Original strand, 7131302 - 7131359
Alignment:
Q  497 atccttattatctaatcctaaactacaatgcatacaaaactagcaaaaccctaatctt 554  Q
    |||||||||| ||||||||||||||||||| | |||||||    ||||||||||||||    
T  7131302 atccttattacctaatcctaaactacaatgtaaacaaaacatctaaaaccctaatctt 7131359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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