View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11979_low_5 (Length: 640)
Name: NF11979_low_5
Description: NF11979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11979_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 16 - 632
Target Start/End: Complemental strand, 10728447 - 10727831
Alignment:
| Q |
16 |
gttagcactgctcttatgagctaaataagttgatttcagtctccataattcccataacaattactcaccgtattccgacacggataaaccttgctaggag |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10728447 |
gttagcactgctcttatgagctaaataagttgatttcagtctccataatccccataacaattactcaccgtattccgacacggataaaccttgctaggag |
10728348 |
T |
|
| Q |
116 |
gaatgtccttccgattaatgcctctcgaatttgtgtgttgtgtgatacggaggaggaaacagatggacatttattcatgcattgcattgtggcgcgtaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10728347 |
gaatgtccttccgattaatgcctctcgaatttgtgtgttgtgtgatacggaggaggaaacagatggacatttattcatgcattgcattgtggtgcgtaat |
10728248 |
T |
|
| Q |
216 |
gtgtggttagggttactattatggttacaaggggagatgataatgctgccaaatttgtttaaccattgggaatgttggaaacttggaatagtatgtcgaa |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10728247 |
gtgtggttagggttactattatggttacaaggggagatgataatgctgccaaatttgtttaaccattgggaatgttggaaacatggaatagtatgtcgag |
10728148 |
T |
|
| Q |
316 |
gaacaaaaaggaaacaaaggggatgagtctcatttggcattcaacgatttgggttttatggaaagctagaaacaatttcattttcaacaatggagtgatt |
415 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10728147 |
gaacaaaaaggaaacaaaggggatgagtctcatttagcattcaacgatttgggtcttatggaaagctagaaacaatttcattttcaacaatggagtgatt |
10728048 |
T |
|
| Q |
416 |
tcgatgccggagctagtggatgaagtaaaagtgttgtcgtggaggtgggggttaactcggctaacaattccgacatgtttgttttatgaatgatgttgga |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10728047 |
tcgatgccggagctagtggatgaagtaaaagtgttgtcgtggaggtgggggttaactcggctaacaattccgacatgtttgttttatgaatgatgttgga |
10727948 |
T |
|
| Q |
516 |
acccaagagattgcctttgtagttcttgagtggggctggtataatgtgcacaggtgcttactggtgttttctgtcttctggtgtgagggttcggctactg |
615 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10727947 |
acccaagagattgcctttgtagttcttgagtggggctggtataatgtgcacaggtgcttactggtgttttctgtcttctggtgtgagggttcggctactg |
10727848 |
T |
|
| Q |
616 |
tttgtgcacaggttctg |
632 |
Q |
| |
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|||||||| ||||||| |
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| T |
10727847 |
tttgtgcagcggttctg |
10727831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 112 - 404
Target Start/End: Complemental strand, 8324677 - 8324402
Alignment:
| Q |
112 |
ggaggaatgtccttccgattaatgcctctcgaatttgtgtgttgtgtgatacggaggaggaaacagatggacatttattcatgcattgcattgtggcgcg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||| | ||| |||||| ||| ||||| ||||||||||||||| |
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| T |
8324677 |
ggaggaatgtccttccgattaatgcctcttgaaattgtgtgttgtgtgatgcagagaaggaaatggatagacatctattcatgcattgca---------- |
8324588 |
T |
|
| Q |
212 |
taatgtgtggttagggttactattatggttacaaggggagatgataatgctgccaaatttgtttaaccattgggaatgttggaaacttggaatagtatgt |
311 |
Q |
| |
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|||||||||| || | |||| ||||||||||||||||||||||||| |||||||||||| |||| ||| | | | |||||||||||||| |
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| T |
8324587 |
--atgtgtggttgagggtgctatattggttacaaggggagatgataatgc-gccaaatttgttcaacctttgtaagtaagtg----ttggaatagtatgt |
8324495 |
T |
|
| Q |
312 |
cgaagaacaaaaaggaaacaaaggggatgagtctcatttggcattcaacgatttgggttttatggaaagctagaaacaatttcattttcaaca |
404 |
Q |
| |
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||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
8324494 |
cgaggagtaaaaaggaaacaaaggggatgagactcatttgacattcaacgatttgggtcatatggaaagttagaaacaattgcattttcaaca |
8324402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 528
Target Start/End: Original strand, 41029688 - 41029725
Alignment:
| Q |
491 |
tgtttgttttatgaatgatgttggaacccaagagattg |
528 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
41029688 |
tgtttgttttatgaatggtgttggaacccaaaagattg |
41029725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 29083182 - 29083230
Alignment:
| Q |
485 |
ccgacatgtttgttttatgaatgatgttggaacccaagagattgccttt |
533 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||| ||| ||||||| |
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| T |
29083182 |
ccgacttgcttgttttatgaatggtgttggaacccaaaagaatgccttt |
29083230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 387
Target Start/End: Original strand, 37035537 - 37035565
Alignment:
| Q |
359 |
acgatttgggttttatggaaagctagaaa |
387 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
37035537 |
acgatttgggttttatggaaagctagaaa |
37035565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 572 - 632
Target Start/End: Original strand, 36518260 - 36518320
Alignment:
| Q |
572 |
cttactggtgttttctgtcttctggtgtgagggttcggctactgtttgtgcacaggttctg |
632 |
Q |
| |
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||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
36518260 |
cttactggtgtttcatgttttctggtgtgagggttcggctgctgtttgtgcagtggttctg |
36518320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 531
Target Start/End: Original strand, 29287095 - 29287141
Alignment:
| Q |
485 |
ccgacatgtttgttttatgaatgatgttggaacccaagagattgcct |
531 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||| || ||||| |
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| T |
29287095 |
ccgacatgtttgttttatgaatgaagttggaatccaagggactgcct |
29287141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 47820179 - 47820216
Alignment:
| Q |
347 |
atttggcattcaacgatttgggttttatggaaagctag |
384 |
Q |
| |
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||||||||| | |||||||||||||||||||||||||| |
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| T |
47820179 |
atttggcatgcgacgatttgggttttatggaaagctag |
47820216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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