View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11979_low_6 (Length: 439)

Name: NF11979_low_6
Description: NF11979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11979_low_6
NF11979_low_6
[»] chr5 (7 HSPs)
chr5 (1-419)||(38816319-38816737)
chr5 (221-370)||(38821782-38821928)
chr5 (32-89)||(22423764-22423822)
chr5 (42-91)||(8420075-8420124)
chr5 (37-89)||(9929668-9929720)
chr5 (61-91)||(24906250-24906280)
chr5 (112-150)||(35665559-35665597)
[»] chr1 (1 HSPs)
chr1 (36-89)||(48547938-48547991)
[»] scaffold0168 (3 HSPs)
scaffold0168 (28-89)||(21217-21278)
scaffold0168 (28-89)||(21088-21149)
scaffold0168 (28-89)||(21346-21407)
[»] chr6 (5 HSPs)
chr6 (42-89)||(426478-426525)
chr6 (42-89)||(5732474-5732521)
chr6 (24-89)||(8805524-8805592)
chr6 (61-91)||(34073276-34073306)
chr6 (48-89)||(2117134-2117175)
[»] chr2 (6 HSPs)
chr2 (42-89)||(19536361-19536408)
chr2 (42-89)||(19574031-19574078)
chr2 (42-88)||(18255945-18255991)
chr2 (42-88)||(34691770-34691816)
chr2 (42-88)||(34714182-34714228)
chr2 (53-89)||(42511322-42511358)
[»] chr3 (4 HSPs)
chr3 (53-91)||(4466538-4466576)
chr3 (61-91)||(5440965-5440995)
chr3 (53-91)||(13807237-13807275)
chr3 (53-89)||(27505334-27505370)
[»] chr7 (3 HSPs)
chr7 (61-90)||(17852091-17852120)
chr7 (24-89)||(11700842-11700909)
chr7 (61-89)||(15680900-15680928)
[»] scaffold0450 (1 HSPs)
scaffold0450 (61-89)||(8564-8592)
[»] scaffold0027 (1 HSPs)
scaffold0027 (43-91)||(46731-46778)
[»] chr4 (2 HSPs)
chr4 (45-89)||(18844423-18844467)
chr4 (53-89)||(28470448-28470484)


Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 38816737 - 38816319
Alignment:
Q  1 gagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagttatattcgtg 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38816737 gagaaaatcgctatatttcagtataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgattcatagttatattcgtg 38816638  T
Q  101 aatcgtgatagtgttggagactgacatctgttggacactggacacacctttaatatgaagtctcggtgctagatatttatgggagatatttatttgtgaa 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816637 aatcgtgatagtgttggagactgacatctgttggacactgcacacacctttaatatgaagtctcggtgctagatatttatgggagatatttatttgtgaa 38816538  T
Q  201 gtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816537 gtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgc 38816438  T
Q  301 ttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctagattttgcagttggcta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816437 ttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctagattttgcagttggcta 38816338  T
Q  401 ctttttgtggttacagttg 419  Q
    |||||||||||||||||||    
T  38816337 ctttttgtggttacagttg 38816319  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 221 - 370
Target Start/End: Complemental strand, 38821928 - 38821782
Alignment:
Q  221 tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga 320  Q
    |||||||||| |||||||||||||||| ||||||||||||||  ||||  | ||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  38821928 tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga 38821829  T
Q  321 caaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttt 370  Q
    |||||||||   || ||||||| |||  ||||| ||||||||||||||||    
T  38821828 caaatggta---tgatgtttagatttgcttaaatcttgttcttagggttt 38821782  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 22423822 - 22423764
Alignment:
Q  32 tgtcggtgtggtgtcggtgtc-ggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    ||||||||| ||||||||||| ||||| | ||||| |||||||||||||||||||||||    
T  22423822 tgtcggtgtcgtgtcggtgtctggacacgcctaatccgaggagtgtccgtgcttcatag 22423764  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 8420075 - 8420124
Alignment:
Q  42 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 91  Q
    |||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  8420075 gtgtcggtgtcggacgcgcctaattcgaggagtatccgtgcttcatagtt 8420124  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 9929668 - 9929720
Alignment:
Q  37 gtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    |||| |||||||| ||||||| | ||||||||||||||||| |||||||||||    
T  9929668 gtgtcgtgtcggtatcggacacgactaattcgaggagtgtctgtgcttcatag 9929720  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 91
Target Start/End: Complemental strand, 24906280 - 24906250
Alignment:
Q  61 ctaattcgaggagtgtccgtgcttcatagtt 91  Q
    |||||||||||||||||||||||||||||||    
T  24906280 ctaattcgaggagtgtccgtgcttcatagtt 24906250  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
Q  112 tgttggagactgacatctgttggacactggacacacctt 150  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  35665597 tgttggaaactgacatgtgttggacactggacacacctt 35665559  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 48547991 - 48547938
Alignment:
Q  36 ggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    ||||| |||||||||||||| | | |||||||||||||||||||||||||||||    
T  48547991 ggtgtcgtgtcggtgtcggatacgcctaattcgaggagtgtccgtgcttcatag 48547938  T

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Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 21217 - 21278
Alignment:
Q  28 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||||||| ||||||||||||||    
T  21217 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgaggagtatccgtgcttcatag 21278  T

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Target: scaffold0168; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 21088 - 21149
Alignment:
Q  28 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| ||| ||||||||||||||    
T  21088 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtatccgtgcttcatag 21149  T

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Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 21346 - 21407
Alignment:
Q  28 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| |||||| |||||||||||    
T  21346 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtgtctgtgcttcatag 21407  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 426525 - 426478
Alignment:
Q  42 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    |||||||||||||||| | |||||  ||||||||||||||||||||||    
T  426525 gtgtcggtgtcggacacgcctaatctgaggagtgtccgtgcttcatag 426478  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 5732521 - 5732474
Alignment:
Q  42 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  5732521 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 5732474  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 8805592 - 8805524
Alignment:
Q  24 taattatgtgtcggtgtggtgtcggt---gtcggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    ||||||||||||||||| ||||| |    || ||||||| ||||| |||||||||||||||||||||||    
T  8805592 taattatgtgtcggtgtagtgtcagacacgtgggacatgcctaatccgaggagtgtccgtgcttcatag 8805524  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 91
Target Start/End: Complemental strand, 34073306 - 34073276
Alignment:
Q  61 ctaattcgaggagtgtccgtgcttcatagtt 91  Q
    |||||||||||||||||||||||||||||||    
T  34073306 ctaattcgaggagtgtccgtgcttcatagtt 34073276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 2117134 - 2117175
Alignment:
Q  48 gtgtcggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  2117134 gtgtcggacatgcctaatcggaggagtgtccgtgcttcatag 2117175  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 19536408 - 19536361
Alignment:
Q  42 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  19536408 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 19536361  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 19574031 - 19574078
Alignment:
Q  42 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||||    
T  19574031 gtgtcggtgtcggacacacctaattcgaggagtgtccatgcttcatag 19574078  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 18255991 - 18255945
Alignment:
Q  42 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 88  Q
    |||||||||||||||| | ||||| | ||||||||||||||||||||    
T  18255991 gtgtcggtgtcggacacgcctaatccaaggagtgtccgtgcttcata 18255945  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 34691816 - 34691770
Alignment:
Q  42 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 88  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34691816 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34691770  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 34714228 - 34714182
Alignment:
Q  42 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 88  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34714228 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34714182  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 42511358 - 42511322
Alignment:
Q  53 ggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  42511358 ggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 4466576 - 4466538
Alignment:
Q  53 ggacatggctaattcgaggagtgtccgtgcttcatagtt 91  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  4466576 ggacacggcttattcgaggagtgtccgtgcttcatagtt 4466538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 91
Target Start/End: Complemental strand, 5440995 - 5440965
Alignment:
Q  61 ctaattcgaggagtgtccgtgcttcatagtt 91  Q
    |||||||||||||||||||||||||||||||    
T  5440995 ctaattcgaggagtgtccgtgcttcatagtt 5440965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 13807237 - 13807275
Alignment:
Q  53 ggacatggctaattcgaggagtgtccgtgcttcatagtt 91  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  13807237 ggacatgcctaattcgaggagtgtccgtgtttcatagtt 13807275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 27505334 - 27505370
Alignment:
Q  53 ggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  27505334 ggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 17852091 - 17852120
Alignment:
Q  61 ctaattcgaggagtgtccgtgcttcatagt 90  Q
    ||||||||||||||||||||||||||||||    
T  17852091 ctaattcgaggagtgtccgtgcttcatagt 17852120  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 11700842 - 11700909
Alignment:
Q  24 taattatgtgtcggtgtggtgtcggtgtcgg--acatggctaattcgaggagtgtccgtgcttcatag 89  Q
    |||||||||||| |||| || ||||||||||  ||| ||||||| |||||||||||| || |||||||    
T  11700842 taattatgtgtctgtgttgtctcggtgtcggacacacggctaatccgaggagtgtccctgattcatag 11700909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 89
Target Start/End: Original strand, 15680900 - 15680928
Alignment:
Q  61 ctaattcgaggagtgtccgtgcttcatag 89  Q
    |||||||||||||||||||||||||||||    
T  15680900 ctaattcgaggagtgtccgtgcttcatag 15680928  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 8592 - 8564
Alignment:
Q  61 ctaattcgaggagtgtccgtgcttcatag 89  Q
    |||||||||||||||||||||||||||||    
T  8592 ctaattcgaggagtgtccgtgcttcatag 8564  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 46731 - 46778
Alignment:
Q  43 tgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 91  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||||||    
T  46731 tgtcggtgtcg-acacgcctaatccgaggagtgtccgtgcttcatagtt 46778  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 18844467 - 18844423
Alignment:
Q  45 tcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    ||||||||||||| | ||||| |||| ||||||||||||||||||    
T  18844467 tcggtgtcggacacgcctaatccgagaagtgtccgtgcttcatag 18844423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 28470448 - 28470484
Alignment:
Q  53 ggacatggctaattcgaggagtgtccgtgcttcatag 89  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  28470448 ggacatgcctaatccgaggagtgtccgtgcttcatag 28470484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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