View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11979_low_8 (Length: 379)
Name: NF11979_low_8
Description: NF11979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11979_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 27 - 332
Target Start/End: Original strand, 13125537 - 13125841
Alignment:
| Q |
27 |
gatatgcatgctttaaattaactagagttaaaaagcaaacataaatgattatttcataaacacattcataaagaaaaaacatatgcatgtcttaaattaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13125537 |
gatatgcatgctttaaattaactagagttaaaaagcaaacataaatgattatttcataaacacattcataaagaaaaaacatatgcatgtcttaaattaa |
13125636 |
T |
|
| Q |
127 |
ctagagttaaacacaaaaacataaacataattatcacataaacagatcattaaaacacataatgaactttttaagcacttaactaacaaattaacttcac |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13125637 |
ctagagttaaacacaaaaacataaacataattatcacataaacagatcatt-aaacacataatgaactttttaagcacttaaataacaaattaacttcac |
13125735 |
T |
|
| Q |
227 |
acaaaatcatatcatcataataacataacatgcatcacaactcaannnnnnncttcaaaaatagcttaatagatccataaacacgcacaaaaacaaaagc |
326 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13125736 |
acaaaatcatatcatcctaataacataacatgcatcacaactcaatttttttcttcaaaaatagcttaatagatccataaacacgcacagaaacaaaagc |
13125835 |
T |
|
| Q |
327 |
catact |
332 |
Q |
| |
|
| |||| |
|
|
| T |
13125836 |
cttact |
13125841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University