View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11979_low_9 (Length: 360)
Name: NF11979_low_9
Description: NF11979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11979_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 25 - 336
Target Start/End: Complemental strand, 45403482 - 45403171
Alignment:
| Q |
25 |
gggattctgtgtgttatattgatattggtacttagttcataatttgtgcatgactattagtggtaatgttagttgtcagtgtttgaactgtgaaactaac |
124 |
Q |
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| T |
45403482 |
gggattctgtatgttatattgatattggtacttagttcataatttgtgcatgactattagtggtaatgttagttgtcagtgtttgaactgtgaaactaac |
45403383 |
T |
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| Q |
125 |
tgagatgtctacttggaacttctcttagatactaaaggaataaattctaacaaattttgtgtagtgtatacagttgtgttattttcacccactttgatca |
224 |
Q |
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| T |
45403382 |
tgagatgtctacttggaacttctcttagatactaaaggaataaattctaacaaattttgtgtagtgtatacagttgtgttattttcacccactttgatca |
45403283 |
T |
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| Q |
225 |
gatcttgcatcctagagatgtacttaaattgtataaattccaaaagtgacatgcttgtgttgtggggtaactatttatatttatctttgcatcaaagaca |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45403282 |
gatcttgcatcctagagatgtacttaaattgtataaattccaaaagtgacatgcttgtgttgtggggtaactatttatatttatctttgcatcaaagaca |
45403183 |
T |
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| Q |
325 |
atgaaatgaatg |
336 |
Q |
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| T |
45403182 |
atgaaatgaatg |
45403171 |
T |
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