View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11980_high_104 (Length: 238)
Name: NF11980_high_104
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_104 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8436057 - 8435835
Alignment:
| Q |
1 |
ctgagactaagagcaaacatctttacttcaatgctagcatcaaagatgtttatagttagtctgatcatactaattataattacacagccaaaagtggttg |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8436057 |
ctgagactaatagcaaacatctttacttcaatgctagcatcaaagatgtttatagttagtctgatcatactaattataattacacagccaaaagtggttg |
8435958 |
T |
|
| Q |
101 |
cttgtggatccaatcttttcttggatttggaacctctatattccaggnnnnnnntatgtttttgttttgacttgtttgtcataactcagcccccctctat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8435957 |
cttgtggatccaatcttttcttggatttggaacctctatattccaggaaaaaaatatgtttctgttttgacttgtttgtcataactcagcccccctctat |
8435858 |
T |
|
| Q |
201 |
ccatgcttcaccatcttcatata |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
8435857 |
ccatgcttcaccatcttcatata |
8435835 |
T |
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