View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11980_high_11 (Length: 570)
Name: NF11980_high_11
Description: NF11980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11980_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Original strand, 12265945 - 12266391
Alignment:
| Q |
19 |
attatgctagttgtagttcaactatgtgacaccactcaatcaaaaatagttgatgaaagttgtgctatagagcgttttgcttgtcgtgcagagtgtcttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12265945 |
attatgctagttgtagttcaactatgtgacactactcaatcaaaaatagttgatgaaagttgtgctatagagcgttttgcttgtcgtgcagagtgtctta |
12266044 |
T |
|
| Q |
119 |
taacatgtgctggttttgataattgcttggaaggttgttttgagcattgtttgatgtaatgatttaacaaggtattcatacttttactctttcttcattt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12266045 |
taacatgtgctggttttgataattgcttggaaggttgttttgagcattgtttgatgtaatgatttaacaaggtattcatacttttactctttcttcattt |
12266144 |
T |
|
| Q |
219 |
tttattttcctaacttaattaattataaacaaaaactgtactatgtctatttggttcaattttcttatattttagttcaagaatgactcaagttcatttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12266145 |
tttattttcctaacttaattaattataaacaaaaactgtactatgtctatttggttcaattttcttatattttagttcaagaatgactcaagttaatttt |
12266244 |
T |
|
| Q |
319 |
atgtatagagatatttacttgtgta-nnnnnnnnataggtgctcgcggaatgcatatgctgacattgattgcttgattcaagttgacgacttgcaacaat |
417 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12266245 |
atgtat--agatatttacttgtgtatttttttttataggtgctcgcggaatgcatatgctgacattgattgcttgattcatgttgacgacttgcaacaat |
12266342 |
T |
|
| Q |
418 |
attaaataattaatttttatgttatgtgaaacttcgtataagaaattaa |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12266343 |
attaaataattaatttttatgttatgtgaaacttcgtataagaaattaa |
12266391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 12266404 - 12266436
Alignment:
| Q |
460 |
aaattaattttaatttaaaatgtccatttgcta |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
12266404 |
aaattaattttaatttaaaatgtccatttgcta |
12266436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 557
Target Start/End: Original strand, 12266452 - 12266496
Alignment:
| Q |
513 |
catttctctccatagtatattgtttgttcctttcttacttctctg |
557 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
12266452 |
catttctctccatagtatattgtttgtgactttcttgcttttctg |
12266496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University